gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 109, 125 |
| AgsI | TTSAA | 2 cut(s) | 130, 311 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 158, 190 |
| AluBI | AGCT | 2 cut(s) | 212, 409 |
| AluI | AGCT | 2 cut(s) | 212, 409 |
| Alw21I | GWGCWC | 2 cut(s) | 24, 202 |
| Alw26I | GTCTC | 1 cut(s) | 35 |
| Alw44I | GTGCAC | 1 cut(s) | 198 |
| AoxI | GGCC | 1 cut(s) | 102 |
| ApaLI | GTGCAC | 1 cut(s) | 198 |
| ApoI | RAATTY | 2 cut(s) | 109, 125 |
| AseI | ATTAAT | 1 cut(s) | 246 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 234 |
| AspS9I | GGNCC | 3 cut(s) | 103, 298, 353 |
| AvaII | GGWCC | 2 cut(s) | 298, 353 |
| BaeGI | GKGCMC | 2 cut(s) | 202, 417 |
| Bbv12I | GWGCWC | 2 cut(s) | 24, 202 |
| BcoDI | GTCTC | 1 cut(s) | 35 |
| BfaI | CTAG | 1 cut(s) | 213 |
| BglII | AGATCT | 1 cut(s) | 141 |
| Bme18I | GGWCC | 2 cut(s) | 298, 353 |
| BmgT120I | GGNCC | 3 cut(s) | 103, 298, 353 |
| BmiI | GGNNCC | 2 cut(s) | 300, 355 |
| BmsI | GCATC | 1 cut(s) | 347 |
| BoxI | GACNNNNGTC | 1 cut(s) | 47 |
| BsaBI | GATNNNNATC | 1 cut(s) | 191 |
| Bse8I | GATNNNNATC | 1 cut(s) | 191 |
| BseGI | GGATG | 4 cut(s) | 73, 184, 232, 338 |
| BseJI | GATNNNNATC | 1 cut(s) | 191 |
| BseMII | CTCAG | 2 cut(s) | 70, 170 |
| BseRI | GAGGAG | 1 cut(s) | 334 |
| BseSI | GKGCMC | 2 cut(s) | 202, 417 |
| BsgI | GTGCAG | 1 cut(s) | 312 |
| BshFI | GGCC | 1 cut(s) | 104 |
| BsiHKAI | GWGCWC | 2 cut(s) | 24, 202 |
| BslFI | GGGAC | 1 cut(s) | 284 |
| BsmAI | GTCTC | 1 cut(s) | 35 |
| BsmFI | GGGAC | 1 cut(s) | 284 |
| BsnI | GGCC | 1 cut(s) | 104 |
| Bsp1286I | GDGCHC | 3 cut(s) | 24, 202, 417 |
| Bsp143I | GATC | 2 cut(s) | 141, 186 |
| BspANI | GGCC | 1 cut(s) | 104 |
| BspCNI | CTCAG | 2 cut(s) | 69, 169 |
| BspLI | GGNNCC | 2 cut(s) | 300, 355 |
| BssMI | GATC | 2 cut(s) | 141, 186 |
| Bst4CI | ACNGT | 1 cut(s) | 277 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 335 |
| BstC8I | GCNNGC | 2 cut(s) | 20, 258 |
| BstDEI | CTNAG | 2 cut(s) | 56, 156 |
| BstF5I | GGATG | 4 cut(s) | 73, 184, 232, 338 |
| BstKTI | GATC | 2 cut(s) | 144, 189 |
| BstMAI | GTCTC | 1 cut(s) | 35 |
| BstMBI | GATC | 2 cut(s) | 141, 186 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 335 |
| BstNSI | RCATGY | 1 cut(s) | 260 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 47 |
| BstSLI | GKGCMC | 2 cut(s) | 202, 417 |
| BstX2I | RGATCY | 1 cut(s) | 141 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 250 |
| BstYI | RGATCY | 1 cut(s) | 141 |
| BsuRI | GGCC | 1 cut(s) | 104 |
| BtsCI | GGATG | 4 cut(s) | 73, 184, 232, 338 |
| BtsIMutI | CAGTG | 1 cut(s) | 282 |
| Cac8I | GCNNGC | 2 cut(s) | 20, 258 |
| Cfr13I | GGNCC | 3 cut(s) | 103, 298, 353 |
| CviAII | CATG | 4 cut(s) | 100, 257, 376, 418 |
| CviJI | RGCY | 4 cut(s) | 104, 212, 281, 409 |
| CviKI_1 | RGCY | 4 cut(s) | 104, 212, 281, 409 |
| DdeI | CTNAG | 2 cut(s) | 56, 156 |
| DpnI | GATC | 2 cut(s) | 143, 188 |
| DpnII | GATC | 2 cut(s) | 141, 186 |
| Eco47I | GGWCC | 2 cut(s) | 298, 353 |
| EcoO109I | RGGNCCY | 2 cut(s) | 298, 353 |
| EcoRI | GAATTC | 1 cut(s) | 109 |
| EcoT22I | ATGCAT | 1 cut(s) | 340 |
| FaeI | CATG | 4 cut(s) | 103, 260, 379, 421 |
| FaqI | GGGAC | 1 cut(s) | 284 |
| FatI | CATG | 4 cut(s) | 99, 256, 375, 417 |
| FauNDI | CATATG | 2 cut(s) | 334, 366 |
| FokI | GGATG | 4 cut(s) | 80, 191, 239, 325 |
| FspBI | CTAG | 1 cut(s) | 213 |
| HaeIII | GGCC | 1 cut(s) | 104 |
| Hin1II | CATG | 4 cut(s) | 103, 260, 379, 421 |
| HindIII | AAGCTT | 1 cut(s) | 407 |
| HinfI | GANTC | 2 cut(s) | 83, 216 |
| Hpy166II | GTNNAC | 3 cut(s) | 97, 200, 469 |
| Hpy188I | TCNGA | 2 cut(s) | 59, 159 |
| Hpy188III | TCNNGA | 1 cut(s) | 308 |
| Hpy8I | GTNNAC | 3 cut(s) | 97, 200, 469 |
| HpyAV | CCTTC | 1 cut(s) | 154 |
| HpyCH4III | ACNGT | 1 cut(s) | 277 |
| HpyCH4V | TGCA | 5 cut(s) | 200, 256, 329, 338, 402 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 335 |
| HpyF3I | CTNAG | 2 cut(s) | 56, 156 |
| Hsp92II | CATG | 4 cut(s) | 103, 260, 379, 421 |
| Kzo9I | GATC | 2 cut(s) | 141, 186 |
| LpnPI | CCDG | 3 cut(s) | 119, 188, 276 |
| LweI | GCATC | 1 cut(s) | 347 |
| MaeI | CTAG | 1 cut(s) | 213 |
| MaeIII | GTNAC | 2 cut(s) | 358, 431 |
| MalI | GATC | 2 cut(s) | 143, 188 |
| MboI | GATC | 2 cut(s) | 141, 186 |
| MboII | GAAGA | 2 cut(s) | 151, 218 |
| MflI | RGATCY | 1 cut(s) | 141 |
| MhlI | GDGCHC | 3 cut(s) | 24, 202, 417 |
| MluCI | AATT | 4 cut(s) | 62, 109, 125, 316 |
| MnlI | CCTC | 4 cut(s) | 129, 352, 355, 468 |
| Mph1103I | ATGCAT | 1 cut(s) | 340 |
| MroXI | GAANNNNTTC | 1 cut(s) | 234 |
| MseI | TTAA | 2 cut(s) | 30, 246 |
| MslI | CAYNNNNRTG | 1 cut(s) | 248 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 335 |
| NdeI | CATATG | 2 cut(s) | 334, 366 |
| NdeII | GATC | 2 cut(s) | 141, 186 |
| NlaIII | CATG | 4 cut(s) | 103, 260, 379, 421 |
| NlaIV | GGNNCC | 2 cut(s) | 300, 355 |
| NmuCI | GTSAC | 2 cut(s) | 358, 431 |
| NsiI | ATGCAT | 1 cut(s) | 340 |
| NspI | RCATGY | 1 cut(s) | 260 |
| PaeI | GCATGC | 1 cut(s) | 260 |
| PdmI | GAANNNNTTC | 1 cut(s) | 234 |
| PfeI | GAWTC | 2 cut(s) | 83, 216 |
| PpuMI | RGGWCCY | 2 cut(s) | 298, 353 |
| PshAI | GACNNNNGTC | 1 cut(s) | 47 |
| PshBI | ATTAAT | 1 cut(s) | 246 |
| Psp5II | RGGWCCY | 2 cut(s) | 298, 353 |
| PspN4I | GGNNCC | 2 cut(s) | 300, 355 |
| PspPI | GGNCC | 3 cut(s) | 103, 298, 353 |
| PspPPI | RGGWCCY | 2 cut(s) | 298, 353 |
| PsuI | RGATCY | 1 cut(s) | 141 |
| RseI | CAYNNNNRTG | 1 cut(s) | 248 |
| SaqAI | TTAA | 2 cut(s) | 30, 246 |
| Sau3AI | GATC | 2 cut(s) | 141, 186 |
| Sau96I | GGNCC | 3 cut(s) | 103, 298, 353 |
| SduI | GDGCHC | 3 cut(s) | 24, 202, 417 |
| SetI | ASST | 3 cut(s) | 214, 300, 411 |
| SfaNI | GCATC | 1 cut(s) | 347 |
| SinI | GGWCC | 2 cut(s) | 298, 353 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 248 |
| SphI | GCATGC | 1 cut(s) | 260 |
| Sse9I | AATT | 4 cut(s) | 62, 109, 125, 316 |
| SspMI | CTAG | 1 cut(s) | 213 |
| TaaI | ACNGT | 1 cut(s) | 277 |
| TasI | AATT | 4 cut(s) | 62, 109, 125, 316 |
| TfiI | GAWTC | 2 cut(s) | 83, 216 |
| Tru1I | TTAA | 2 cut(s) | 30, 246 |
| Tru9I | TTAA | 2 cut(s) | 30, 246 |
| TscAI | CASTG | 1 cut(s) | 282 |
| TseFI | GTSAC | 2 cut(s) | 358, 431 |
| Tsp45I | GTSAC | 2 cut(s) | 358, 431 |
| TspDTI | ATGAA | 4 cut(s) | 75, 79, 243, 434 |
| TspRI | CASTG | 1 cut(s) | 282 |
| VneI | GTGCAC | 1 cut(s) | 198 |
| VpaK11BI | GGWCC | 2 cut(s) | 298, 353 |
| VspI | ATTAAT | 1 cut(s) | 246 |
| XapI | RAATTY | 2 cut(s) | 109, 125 |
| XceI | RCATGY | 1 cut(s) | 260 |
| XmnI | GAANNNNTTC | 1 cut(s) | 234 |
| XspI | CTAG | 1 cut(s) | 213 |
| Zsp2I | ATGCAT | 1 cut(s) | 340 |