gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 367 |
| AcoI | YGGCCR | 1 cut(s) | 192 |
| AcsI | RAATTY | 1 cut(s) | 290 |
| AcuI | CTGAAG | 2 cut(s) | 368, 468 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 177, 488 |
| AgsI | TTSAA | 1 cut(s) | 144 |
| AjnI | CCWGG | 2 cut(s) | 47, 170 |
| AluBI | AGCT | 3 cut(s) | 346, 391, 503 |
| AluI | AGCT | 3 cut(s) | 346, 391, 503 |
| Alw21I | GWGCWC | 2 cut(s) | 381, 462 |
| Alw44I | GTGCAC | 1 cut(s) | 458 |
| AlwI | GGATC | 1 cut(s) | 367 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 317 |
| AoxI | GGCC | 2 cut(s) | 192, 276 |
| ApaLI | GTGCAC | 1 cut(s) | 458 |
| ApeKI | GCWGC | 1 cut(s) | 317 |
| ApoI | RAATTY | 1 cut(s) | 290 |
| AseI | ATTAAT | 1 cut(s) | 402 |
| AxyI | CCTNAGG | 1 cut(s) | 120 |
| BaeGI | GKGCMC | 1 cut(s) | 462 |
| BalI | TGGCCA | 1 cut(s) | 194 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 380, 412 |
| Bbv12I | GWGCWC | 2 cut(s) | 381, 462 |
| BbvI | GCAGC | 1 cut(s) | 304 |
| BccI | CCATC | 1 cut(s) | 421 |
| BciT130I | CCWGG | 2 cut(s) | 49, 172 |
| BfaI | CTAG | 2 cut(s) | 98, 500 |
| BisI | GCNGC | 1 cut(s) | 318 |
| BlsI | GCNGC | 1 cut(s) | 319 |
| Bme1390I | CCNGG | 2 cut(s) | 49, 172 |
| BmrFI | CCNGG | 2 cut(s) | 49, 172 |
| BmsI | GCATC | 2 cut(s) | 12, 69 |
| BpmI | CTGGAG | 1 cut(s) | 70 |
| Bpu10I | CCTNAGC | 1 cut(s) | 413 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 177, 488 |
| Bse1I | ACTGG | 1 cut(s) | 34 |
| Bse21I | CCTNAGG | 1 cut(s) | 120 |
| BseBI | CCWGG | 2 cut(s) | 49, 172 |
| BseGI | GGATG | 1 cut(s) | 118 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 177, 488 |
| BseMII | CTCAG | 3 cut(s) | 111, 138, 427 |
| BseNI | ACTGG | 1 cut(s) | 34 |
| BseRI | GAGGAG | 1 cut(s) | 164 |
| BseSI | GKGCMC | 1 cut(s) | 462 |
| BseXI | GCAGC | 1 cut(s) | 304 |
| BshFI | GGCC | 2 cut(s) | 194, 278 |
| BsiHKAI | GWGCWC | 2 cut(s) | 381, 462 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 177, 488 |
| BsmI | GAATGC | 1 cut(s) | 465 |
| BsnI | GGCC | 2 cut(s) | 194, 278 |
| Bsp1286I | GDGCHC | 2 cut(s) | 381, 462 |
| Bsp143I | GATC | 2 cut(s) | 359, 393 |
| BspANI | GGCC | 2 cut(s) | 194, 278 |
| BspCNI | CTCAG | 3 cut(s) | 112, 139, 426 |
| BspHI | TCATGA | 1 cut(s) | 106 |
| BspPI | GGATC | 1 cut(s) | 367 |
| BsrI | ACTGG | 1 cut(s) | 34 |
| BssMI | GATC | 2 cut(s) | 359, 393 |
| Bst2UI | CCWGG | 2 cut(s) | 49, 172 |
| Bst4CI | ACNGT | 1 cut(s) | 229 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 317, 471 |
| BstDEI | CTNAG | 5 cut(s) | 120, 147, 330, 413, 493 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 175 |
| BstF5I | GGATG | 1 cut(s) | 118 |
| BstKTI | GATC | 2 cut(s) | 362, 396 |
| BstMBI | GATC | 2 cut(s) | 359, 393 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 317, 471 |
| BstNI | CCWGG | 2 cut(s) | 49, 172 |
| BstNSI | RCATGY | 1 cut(s) | 458 |
| BstSCI | CCNGG | 2 cut(s) | 47, 170 |
| BstSLI | GKGCMC | 1 cut(s) | 462 |
| BstV1I | GCAGC | 1 cut(s) | 304 |
| BstX2I | RGATCY | 1 cut(s) | 359 |
| BstYI | RGATCY | 1 cut(s) | 359 |
| Bsu36I | CCTNAGG | 1 cut(s) | 120 |
| BsuRI | GGCC | 2 cut(s) | 194, 278 |
| BtsCI | GGATG | 1 cut(s) | 118 |
| BtsI | GCAGTG | 1 cut(s) | 460 |
| BtsIMutI | CAGTG | 4 cut(s) | 27, 225, 460, 492 |
| CaiI | CAGNNNCTG | 1 cut(s) | 317 |
| CciI | TCATGA | 1 cut(s) | 106 |
| CviAII | CATG | 4 cut(s) | 83, 107, 341, 455 |
| DdeI | CTNAG | 5 cut(s) | 120, 147, 330, 413, 493 |
| DpnI | GATC | 2 cut(s) | 361, 395 |
| DpnII | GATC | 2 cut(s) | 359, 393 |
| DraI | TTTAAA | 2 cut(s) | 166, 295 |
| EaeI | YGGCCR | 1 cut(s) | 192 |
| Eco57I | CTGAAG | 2 cut(s) | 368, 468 |
| Eco81I | CCTNAGG | 1 cut(s) | 120 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 175 |
| EcoRII | CCWGG | 2 cut(s) | 47, 170 |
| EcoT22I | ATGCAT | 1 cut(s) | 84 |
| FaeI | CATG | 4 cut(s) | 86, 110, 344, 458 |
| FatI | CATG | 4 cut(s) | 82, 106, 340, 454 |
| Fnu4HI | GCNGC | 1 cut(s) | 318 |
| FokI | GGATG | 1 cut(s) | 125 |
| Fsp4HI | GCNGC | 1 cut(s) | 318 |
| FspBI | CTAG | 2 cut(s) | 98, 500 |
| GluI | GCNGC | 1 cut(s) | 318 |
| GsuI | CTGGAG | 1 cut(s) | 70 |
| HaeIII | GGCC | 2 cut(s) | 194, 278 |
| Hin1II | CATG | 4 cut(s) | 86, 110, 344, 458 |
| Hpy166II | GTNNAC | 1 cut(s) | 460 |
| Hpy188III | TCNNGA | 1 cut(s) | 107 |
| Hpy8I | GTNNAC | 1 cut(s) | 460 |
| HpyAV | CCTTC | 2 cut(s) | 350, 492 |
| HpyCH4III | ACNGT | 1 cut(s) | 229 |
| HpyCH4V | TGCA | 5 cut(s) | 82, 320, 454, 460, 465 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 317, 471 |
| HpyF3I | CTNAG | 5 cut(s) | 120, 147, 330, 413, 493 |
| Hsp92II | CATG | 4 cut(s) | 86, 110, 344, 458 |
| Kzo9I | GATC | 2 cut(s) | 359, 393 |
| LmnI | GCTCC | 1 cut(s) | 508 |
| Lsp1109I | GCAGC | 1 cut(s) | 304 |
| LweI | GCATC | 2 cut(s) | 12, 69 |
| MaeI | CTAG | 2 cut(s) | 98, 500 |
| MaeIII | GTNAC | 1 cut(s) | 420 |
| MalI | GATC | 2 cut(s) | 361, 395 |
| MboI | GATC | 2 cut(s) | 359, 393 |
| MboII | GAAGA | 1 cut(s) | 257 |
| MflI | RGATCY | 1 cut(s) | 359 |
| MhlI | GDGCHC | 2 cut(s) | 381, 462 |
| MlsI | TGGCCA | 1 cut(s) | 194 |
| MluCI | AATT | 1 cut(s) | 290 |
| MluNI | TGGCCA | 1 cut(s) | 194 |
| MnlI | CCTC | 8 cut(s) | 17, 103, 115, 142, 145, 227, 268, 307 |
| Mox20I | TGGCCA | 1 cut(s) | 194 |
| Mph1103I | ATGCAT | 1 cut(s) | 84 |
| MscI | TGGCCA | 1 cut(s) | 194 |
| MseI | TTAA | 6 cut(s) | 128, 156, 165, 282, 294, 402 |
| MslI | CAYNNNNRTG | 1 cut(s) | 111 |
| Msp20I | TGGCCA | 1 cut(s) | 194 |
| MspR9I | CCNGG | 2 cut(s) | 49, 172 |
| Mva1269I | GAATGC | 1 cut(s) | 465 |
| MvaI | CCWGG | 2 cut(s) | 49, 172 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 317, 471 |
| NdeII | GATC | 2 cut(s) | 359, 393 |
| NlaIII | CATG | 4 cut(s) | 86, 110, 344, 458 |
| NsiI | ATGCAT | 1 cut(s) | 84 |
| NspI | RCATGY | 1 cut(s) | 458 |
| PagI | TCATGA | 1 cut(s) | 106 |
| PctI | GAATGC | 1 cut(s) | 465 |
| PflFI | GACNNNGTC | 1 cut(s) | 98 |
| PkrI | GCNGC | 1 cut(s) | 319 |
| PshBI | ATTAAT | 1 cut(s) | 402 |
| Psp6I | CCWGG | 2 cut(s) | 47, 170 |
| PspGI | CCWGG | 2 cut(s) | 47, 170 |
| PstNI | CAGNNNCTG | 1 cut(s) | 317 |
| PsuI | RGATCY | 1 cut(s) | 359 |
| PsyI | GACNNNGTC | 1 cut(s) | 98 |
| RseI | CAYNNNNRTG | 1 cut(s) | 111 |
| SaqAI | TTAA | 6 cut(s) | 128, 156, 165, 282, 294, 402 |
| SatI | GCNGC | 1 cut(s) | 318 |
| Sau3AI | GATC | 2 cut(s) | 359, 393 |
| ScrFI | CCNGG | 2 cut(s) | 49, 172 |
| SduI | GDGCHC | 2 cut(s) | 381, 462 |
| SfaNI | GCATC | 2 cut(s) | 12, 69 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 111 |
| Sse9I | AATT | 1 cut(s) | 290 |
| SspMI | CTAG | 2 cut(s) | 98, 500 |
| StyD4I | CCNGG | 2 cut(s) | 47, 170 |
| TaaI | ACNGT | 1 cut(s) | 229 |
| TaqI | TCGA | 1 cut(s) | 63 |
| TasI | AATT | 1 cut(s) | 290 |
| Tru1I | TTAA | 6 cut(s) | 128, 156, 165, 282, 294, 402 |
| Tru9I | TTAA | 6 cut(s) | 128, 156, 165, 282, 294, 402 |
| TscAI | CASTG | 4 cut(s) | 34, 232, 467, 492 |
| TseI | GCWGC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 5 cut(s) | 17, 95, 129, 369, 401 |
| TspRI | CASTG | 4 cut(s) | 34, 232, 467, 492 |
| Tth111I | GACNNNGTC | 1 cut(s) | 98 |
| VneI | GTGCAC | 1 cut(s) | 458 |
| VspI | ATTAAT | 1 cut(s) | 402 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 175 |
| XapI | RAATTY | 1 cut(s) | 290 |
| XceI | RCATGY | 1 cut(s) | 458 |
| XspI | CTAG | 2 cut(s) | 98, 500 |
| Zsp2I | ATGCAT | 1 cut(s) | 84 |