gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 22 - 173 | 1.1e-16 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 7 cut(s) | 30, 54, 105, 365, 570, 583, 652 |
| AcsI | RAATTY | 2 cut(s) | 524, 700 |
| AfaI | GTAC | 1 cut(s) | 73 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 262, 427, 549 |
| AflII | CTTAAG | 2 cut(s) | 37, 656 |
| AgsI | TTSAA | 3 cut(s) | 287, 398, 682 |
| AluBI | AGCT | 6 cut(s) | 95, 197, 322, 435, 472, 500 |
| AluI | AGCT | 6 cut(s) | 95, 197, 322, 435, 472, 500 |
| Alw26I | GTCTC | 1 cut(s) | 149 |
| AlwI | GGATC | 7 cut(s) | 30, 54, 105, 365, 570, 583, 652 |
| ApeKI | GCWGC | 1 cut(s) | 206 |
| ApoI | RAATTY | 2 cut(s) | 524, 700 |
| AspA2I | CCTAGG | 1 cut(s) | 10 |
| AspLEI | GCGC | 2 cut(s) | 280, 310 |
| AvrII | CCTAGG | 1 cut(s) | 10 |
| BamHI | GGATCC | 1 cut(s) | 575 |
| BbvI | GCAGC | 1 cut(s) | 218 |
| BccI | CCATC | 1 cut(s) | 256 |
| BcoDI | GTCTC | 1 cut(s) | 149 |
| BfaI | CTAG | 4 cut(s) | 11, 353, 501, 746 |
| BfmI | CTRYAG | 1 cut(s) | 415 |
| BfrI | CTTAAG | 2 cut(s) | 37, 656 |
| BisI | GCNGC | 1 cut(s) | 207 |
| BlnI | CCTAGG | 1 cut(s) | 10 |
| BlsI | GCNGC | 1 cut(s) | 208 |
| BmcAI | AGTACT | 1 cut(s) | 73 |
| BmiI | GGNNCC | 1 cut(s) | 577 |
| BmrI | ACTGGG | 1 cut(s) | 538 |
| BmsI | GCATC | 2 cut(s) | 178, 400 |
| BmuI | ACTGGG | 1 cut(s) | 538 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 598, 630 |
| Bpu10I | CCTNAGC | 1 cut(s) | 332 |
| BsaJI | CCNNGG | 1 cut(s) | 10 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 262, 427, 549 |
| Bse1I | ACTGG | 2 cut(s) | 69, 544 |
| Bse3DI | GCAATG | 1 cut(s) | 171 |
| BseDI | CCNNGG | 1 cut(s) | 10 |
| BseGI | GGATG | 2 cut(s) | 558, 635 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 262, 427, 549 |
| BseMI | GCAATG | 1 cut(s) | 171 |
| BseMII | CTCAG | 4 cut(s) | 95, 323, 458, 662 |
| BseNI | ACTGG | 2 cut(s) | 69, 544 |
| BseXI | GCAGC | 1 cut(s) | 218 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 262, 427, 549 |
| BsmAI | GTCTC | 1 cut(s) | 149 |
| Bsp143I | GATC | 6 cut(s) | 22, 46, 110, 370, 575, 644 |
| BspCNI | CTCAG | 4 cut(s) | 94, 324, 457, 661 |
| BspHI | TCATGA | 1 cut(s) | 135 |
| BspLI | GGNNCC | 1 cut(s) | 577 |
| BspPI | GGATC | 7 cut(s) | 30, 54, 105, 365, 570, 583, 652 |
| BspTI | CTTAAG | 2 cut(s) | 37, 656 |
| BsrDI | GCAATG | 1 cut(s) | 171 |
| BsrI | ACTGG | 2 cut(s) | 69, 544 |
| BssECI | CCNNGG | 1 cut(s) | 10 |
| BssMI | GATC | 6 cut(s) | 22, 46, 110, 370, 575, 644 |
| BssT1I | CCWWGG | 1 cut(s) | 10 |
| Bst4CI | ACNGT | 3 cut(s) | 160, 270, 676 |
| Bst6I | CTCTTC | 1 cut(s) | 637 |
| BstAFI | CTTAAG | 2 cut(s) | 37, 656 |
| BstDEI | CTNAG | 7 cut(s) | 81, 273, 332, 444, 648, 729, 780 |
| BstEII | GGTNACC | 1 cut(s) | 538 |
| BstF5I | GGATG | 2 cut(s) | 558, 635 |
| BstHHI | GCGC | 2 cut(s) | 280, 310 |
| BstKTI | GATC | 6 cut(s) | 25, 49, 113, 373, 578, 647 |
| BstMAI | GTCTC | 1 cut(s) | 149 |
| BstMBI | GATC | 6 cut(s) | 22, 46, 110, 370, 575, 644 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 203, 608, 693 |
| BstPI | GGTNACC | 1 cut(s) | 538 |
| BstSFI | CTRYAG | 1 cut(s) | 415 |
| BstV1I | GCAGC | 1 cut(s) | 218 |
| BstX2I | RGATCY | 4 cut(s) | 22, 110, 575, 644 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 121 |
| BstYI | RGATCY | 4 cut(s) | 22, 110, 575, 644 |
| BtsCI | GGATG | 2 cut(s) | 558, 635 |
| BtsIMutI | CAGTG | 1 cut(s) | 266 |
| CciI | TCATGA | 1 cut(s) | 135 |
| CfoI | GCGC | 2 cut(s) | 280, 310 |
| Csp6I | GTAC | 1 cut(s) | 72 |
| CviAII | CATG | 3 cut(s) | 136, 599, 712 |
| CviQI | GTAC | 1 cut(s) | 72 |
| DdeI | CTNAG | 7 cut(s) | 81, 273, 332, 444, 648, 729, 780 |
| DpnI | GATC | 6 cut(s) | 24, 48, 112, 372, 577, 646 |
| DpnII | GATC | 6 cut(s) | 22, 46, 110, 370, 575, 644 |
| Eam1104I | CTCTTC | 1 cut(s) | 637 |
| EarI | CTCTTC | 1 cut(s) | 637 |
| Eco130I | CCWWGG | 1 cut(s) | 10 |
| Eco91I | GGTNACC | 1 cut(s) | 538 |
| EcoO65I | GGTNACC | 1 cut(s) | 538 |
| EcoT14I | CCWWGG | 1 cut(s) | 10 |
| ErhI | CCWWGG | 1 cut(s) | 10 |
| FaeI | CATG | 3 cut(s) | 139, 602, 715 |
| FatI | CATG | 3 cut(s) | 135, 598, 711 |
| Fnu4HI | GCNGC | 1 cut(s) | 207 |
| FokI | GGATG | 2 cut(s) | 565, 622 |
| Fsp4HI | GCNGC | 1 cut(s) | 207 |
| FspBI | CTAG | 4 cut(s) | 11, 353, 501, 746 |
| GlaI | GCGC | 2 cut(s) | 279, 309 |
| GluI | GCNGC | 1 cut(s) | 207 |
| HhaI | GCGC | 2 cut(s) | 280, 310 |
| Hin1II | CATG | 3 cut(s) | 139, 602, 715 |
| Hin6I | GCGC | 2 cut(s) | 278, 308 |
| HinP1I | GCGC | 2 cut(s) | 278, 308 |
| HindIII | AAGCTT | 1 cut(s) | 195 |
| HinfI | GANTC | 2 cut(s) | 230, 398 |
| Hpy166II | GTNNAC | 1 cut(s) | 767 |
| Hpy188I | TCNGA | 3 cut(s) | 84, 447, 651 |
| Hpy188III | TCNNGA | 5 cut(s) | 26, 136, 227, 368, 395 |
| Hpy8I | GTNNAC | 1 cut(s) | 767 |
| HpyAV | CCTTC | 5 cut(s) | 79, 281, 287, 559, 748 |
| HpyCH4III | ACNGT | 3 cut(s) | 160, 270, 676 |
| HpyCH4IV | ACGT | 1 cut(s) | 462 |
| HpyCH4V | TGCA | 3 cut(s) | 176, 490, 696 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 203, 608, 693 |
| HpyF3I | CTNAG | 7 cut(s) | 81, 273, 332, 444, 648, 729, 780 |
| HpySE526I | ACGT | 1 cut(s) | 462 |
| Hsp92II | CATG | 3 cut(s) | 139, 602, 715 |
| HspAI | GCGC | 2 cut(s) | 278, 308 |
| Kzo9I | GATC | 6 cut(s) | 22, 46, 110, 370, 575, 644 |
| LpnPI | CCDG | 8 cut(s) | 66, 82, 188, 212, 269, 344, 381, 557 |
| Lsp1109I | GCAGC | 1 cut(s) | 218 |
| LweI | GCATC | 2 cut(s) | 178, 400 |
| MaeI | CTAG | 4 cut(s) | 11, 353, 501, 746 |
| MaeII | ACGT | 1 cut(s) | 462 |
| MaeIII | GTNAC | 2 cut(s) | 538, 707 |
| MalI | GATC | 6 cut(s) | 24, 48, 112, 372, 577, 646 |
| MboI | GATC | 6 cut(s) | 22, 46, 110, 370, 575, 644 |
| MboII | GAAGA | 4 cut(s) | 506, 624, 727, 784 |
| MflI | RGATCY | 4 cut(s) | 22, 110, 575, 644 |
| MluCI | AATT | 5 cut(s) | 15, 357, 524, 700, 721 |
| MmeI | TCCRAC | 3 cut(s) | 89, 138, 553 |
| MnlI | CCTC | 5 cut(s) | 37, 158, 244, 603, 640 |
| MseI | TTAA | 3 cut(s) | 38, 327, 657 |
| MspCI | CTTAAG | 2 cut(s) | 37, 656 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 203, 608, 693 |
| NdeII | GATC | 6 cut(s) | 22, 46, 110, 370, 575, 644 |
| NlaIII | CATG | 3 cut(s) | 139, 602, 715 |
| NlaIV | GGNNCC | 1 cut(s) | 577 |
| NmuCI | GTSAC | 1 cut(s) | 707 |
| PagI | TCATGA | 1 cut(s) | 135 |
| PfeI | GAWTC | 2 cut(s) | 230, 398 |
| PkrI | GCNGC | 1 cut(s) | 208 |
| PspEI | GGTNACC | 1 cut(s) | 538 |
| PspN4I | GGNNCC | 1 cut(s) | 577 |
| PsuI | RGATCY | 4 cut(s) | 22, 110, 575, 644 |
| RsaI | GTAC | 1 cut(s) | 73 |
| RsaNI | GTAC | 1 cut(s) | 72 |
| SaqAI | TTAA | 3 cut(s) | 38, 327, 657 |
| SatI | GCNGC | 1 cut(s) | 207 |
| Sau3AI | GATC | 6 cut(s) | 22, 46, 110, 370, 575, 644 |
| ScaI | AGTACT | 1 cut(s) | 73 |
| SfaNI | GCATC | 2 cut(s) | 178, 400 |
| SfcI | CTRYAG | 1 cut(s) | 415 |
| SmlI | CTYRAG | 2 cut(s) | 37, 656 |
| SmoI | CTYRAG | 2 cut(s) | 37, 656 |
| Sse9I | AATT | 5 cut(s) | 15, 357, 524, 700, 721 |
| SspMI | CTAG | 4 cut(s) | 11, 353, 501, 746 |
| StyI | CCWWGG | 1 cut(s) | 10 |
| TaaI | ACNGT | 3 cut(s) | 160, 270, 676 |
| TaiI | ACGT | 1 cut(s) | 465 |
| TaqI | TCGA | 1 cut(s) | 163 |
| TasI | AATT | 5 cut(s) | 15, 357, 524, 700, 721 |
| TatI | WGTACW | 1 cut(s) | 71 |
| TfiI | GAWTC | 2 cut(s) | 230, 398 |
| Tru1I | TTAA | 3 cut(s) | 38, 327, 657 |
| Tru9I | TTAA | 3 cut(s) | 38, 327, 657 |
| TscAI | CASTG | 1 cut(s) | 273 |
| TseFI | GTSAC | 1 cut(s) | 707 |
| TseI | GCWGC | 1 cut(s) | 206 |
| Tsp45I | GTSAC | 1 cut(s) | 707 |
| TspDTI | ATGAA | 8 cut(s) | 124, 152, 164, 332, 528, 569, 624, 728 |
| TspRI | CASTG | 1 cut(s) | 273 |
| Vha464I | CTTAAG | 2 cut(s) | 37, 656 |
| XapI | RAATTY | 2 cut(s) | 524, 700 |
| XmaJI | CCTAGG | 1 cut(s) | 10 |
| XspI | CTAG | 4 cut(s) | 11, 353, 501, 746 |
| ZrmI | AGTACT | 1 cut(s) | 73 |