gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 53 - 166 | 1.5e-09 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 521 |
| AccB1I | GGYRCC | 1 cut(s) | 521 |
| AclI | AACGTT | 1 cut(s) | 39 |
| AclWI | GGATC | 2 cut(s) | 367, 388 |
| AcsI | RAATTY | 1 cut(s) | 289 |
| AcuI | CTGAAG | 1 cut(s) | 368 |
| AfaI | GTAC | 1 cut(s) | 523 |
| AjnI | CCWGG | 2 cut(s) | 47, 169 |
| AluBI | AGCT | 3 cut(s) | 346, 391, 504 |
| AluI | AGCT | 3 cut(s) | 346, 391, 504 |
| Alw21I | GWGCWC | 1 cut(s) | 381 |
| AlwI | GGATC | 2 cut(s) | 367, 388 |
| Ama87I | CYCGRG | 2 cut(s) | 119, 413 |
| ApeKI | GCWGC | 1 cut(s) | 317 |
| ApoI | RAATTY | 1 cut(s) | 289 |
| AseI | ATTAAT | 1 cut(s) | 402 |
| Asp718I | GGTACC | 1 cut(s) | 521 |
| AspS9I | GGNCC | 1 cut(s) | 527 |
| AsuHPI | GGTGA | 2 cut(s) | 19, 500 |
| AvaI | CYCGRG | 2 cut(s) | 119, 413 |
| AvaII | GGWCC | 1 cut(s) | 527 |
| BanI | GGYRCC | 1 cut(s) | 521 |
| Bbv12I | GWGCWC | 1 cut(s) | 381 |
| BbvI | GCAGC | 1 cut(s) | 304 |
| BccI | CCATC | 1 cut(s) | 421 |
| BciT130I | CCWGG | 2 cut(s) | 49, 171 |
| BfaI | CTAG | 3 cut(s) | 98, 408, 501 |
| BisI | GCNGC | 1 cut(s) | 318 |
| BlsI | GCNGC | 1 cut(s) | 319 |
| Bme1390I | CCNGG | 2 cut(s) | 49, 171 |
| Bme18I | GGWCC | 1 cut(s) | 527 |
| BmeT110I | CYCGRG | 2 cut(s) | 119, 413 |
| BmgT120I | GGNCC | 1 cut(s) | 527 |
| BmiI | GGNNCC | 1 cut(s) | 523 |
| BmrFI | CCNGG | 2 cut(s) | 49, 171 |
| BmsI | GCATC | 2 cut(s) | 12, 69 |
| BpmI | CTGGAG | 1 cut(s) | 70 |
| BsaWI | WCCGGW | 2 cut(s) | 29, 524 |
| BseBI | CCWGG | 2 cut(s) | 49, 171 |
| BseGI | GGATG | 1 cut(s) | 118 |
| BseRI | GAGGAG | 1 cut(s) | 163 |
| BseXI | GCAGC | 1 cut(s) | 304 |
| BshNI | GGYRCC | 1 cut(s) | 521 |
| BsiHKAI | GWGCWC | 1 cut(s) | 381 |
| BsiHKCI | CYCGRG | 2 cut(s) | 119, 413 |
| BsiSI | CCGG | 2 cut(s) | 30, 525 |
| BsmI | GAATGC | 1 cut(s) | 466 |
| BsoBI | CYCGRG | 2 cut(s) | 119, 413 |
| Bsp1286I | GDGCHC | 1 cut(s) | 381 |
| Bsp143I | GATC | 3 cut(s) | 275, 359, 393 |
| BspHI | TCATGA | 1 cut(s) | 106 |
| BspLI | GGNNCC | 1 cut(s) | 523 |
| BspPI | GGATC | 2 cut(s) | 367, 388 |
| BspT107I | GGYRCC | 1 cut(s) | 521 |
| BssMI | GATC | 3 cut(s) | 275, 359, 393 |
| Bst2UI | CCWGG | 2 cut(s) | 49, 171 |
| Bst4CI | ACNGT | 1 cut(s) | 229 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 472 |
| BstDEI | CTNAG | 2 cut(s) | 330, 494 |
| BstF5I | GGATG | 1 cut(s) | 118 |
| BstKTI | GATC | 3 cut(s) | 278, 362, 396 |
| BstMBI | GATC | 3 cut(s) | 275, 359, 393 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 166, 472 |
| BstNI | CCWGG | 2 cut(s) | 49, 171 |
| BstNSI | RCATGY | 1 cut(s) | 458 |
| BstSCI | CCNGG | 2 cut(s) | 47, 169 |
| BstV1I | GCAGC | 1 cut(s) | 304 |
| BstX2I | RGATCY | 1 cut(s) | 359 |
| BstYI | RGATCY | 1 cut(s) | 359 |
| BtsCI | GGATG | 1 cut(s) | 118 |
| BtsI | GCAGTG | 1 cut(s) | 461 |
| BtsIMutI | CAGTG | 2 cut(s) | 150, 461 |
| CciI | TCATGA | 1 cut(s) | 106 |
| Cfr13I | GGNCC | 1 cut(s) | 527 |
| Csp6I | GTAC | 1 cut(s) | 522 |
| CviAII | CATG | 4 cut(s) | 83, 107, 341, 455 |
| CviQI | GTAC | 1 cut(s) | 522 |
| DdeI | CTNAG | 2 cut(s) | 330, 494 |
| DpnI | GATC | 3 cut(s) | 277, 361, 395 |
| DpnII | GATC | 3 cut(s) | 275, 359, 393 |
| DraI | TTTAAA | 2 cut(s) | 165, 294 |
| Eco47I | GGWCC | 1 cut(s) | 527 |
| Eco57I | CTGAAG | 1 cut(s) | 368 |
| Eco88I | CYCGRG | 2 cut(s) | 119, 413 |
| EcoRII | CCWGG | 2 cut(s) | 47, 169 |
| EcoT22I | ATGCAT | 1 cut(s) | 84 |
| FaeI | CATG | 4 cut(s) | 86, 110, 344, 458 |
| FatI | CATG | 4 cut(s) | 82, 106, 340, 454 |
| Fnu4HI | GCNGC | 1 cut(s) | 318 |
| FokI | GGATG | 1 cut(s) | 125 |
| Fsp4HI | GCNGC | 1 cut(s) | 318 |
| FspBI | CTAG | 3 cut(s) | 98, 408, 501 |
| GluI | GCNGC | 1 cut(s) | 318 |
| GsuI | CTGGAG | 1 cut(s) | 70 |
| HapII | CCGG | 2 cut(s) | 30, 525 |
| Hin1II | CATG | 4 cut(s) | 86, 110, 344, 458 |
| HinfI | GANTC | 3 cut(s) | 56, 179, 265 |
| HpaII | CCGG | 2 cut(s) | 30, 525 |
| HphI | GGTGA | 2 cut(s) | 19, 500 |
| Hpy166II | GTNNAC | 1 cut(s) | 491 |
| Hpy188I | TCNGA | 1 cut(s) | 223 |
| Hpy188III | TCNNGA | 2 cut(s) | 107, 196 |
| Hpy8I | GTNNAC | 1 cut(s) | 491 |
| HpyAV | CCTTC | 2 cut(s) | 350, 493 |
| HpyCH4III | ACNGT | 1 cut(s) | 229 |
| HpyCH4IV | ACGT | 1 cut(s) | 39 |
| HpyCH4V | TGCA | 5 cut(s) | 82, 320, 454, 461, 466 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 166, 472 |
| HpyF3I | CTNAG | 2 cut(s) | 330, 494 |
| HpySE526I | ACGT | 1 cut(s) | 39 |
| Hsp92II | CATG | 4 cut(s) | 86, 110, 344, 458 |
| KpnI | GGTACC | 1 cut(s) | 525 |
| Kzo9I | GATC | 3 cut(s) | 275, 359, 393 |
| LpnPI | CCDG | 7 cut(s) | 34, 43, 61, 156, 183, 264, 348 |
| Lsp1109I | GCAGC | 1 cut(s) | 304 |
| LweI | GCATC | 2 cut(s) | 12, 69 |
| MaeI | CTAG | 3 cut(s) | 98, 408, 501 |
| MaeII | ACGT | 1 cut(s) | 39 |
| MaeIII | GTNAC | 1 cut(s) | 420 |
| MalI | GATC | 3 cut(s) | 277, 361, 395 |
| MboI | GATC | 3 cut(s) | 275, 359, 393 |
| MboII | GAAGA | 1 cut(s) | 257 |
| MflI | RGATCY | 1 cut(s) | 359 |
| MhlI | GDGCHC | 1 cut(s) | 381 |
| MluCI | AATT | 1 cut(s) | 289 |
| MlyI | GAGTC | 2 cut(s) | 188, 259 |
| MmeI | TCCRAC | 1 cut(s) | 246 |
| MnlI | CCTC | 7 cut(s) | 17, 103, 115, 141, 144, 227, 307 |
| Mph1103I | ATGCAT | 1 cut(s) | 84 |
| MseI | TTAA | 5 cut(s) | 128, 155, 164, 293, 402 |
| MslI | CAYNNNNRTG | 2 cut(s) | 111, 402 |
| MspI | CCGG | 2 cut(s) | 30, 525 |
| MspR9I | CCNGG | 2 cut(s) | 49, 171 |
| Mva1269I | GAATGC | 1 cut(s) | 466 |
| MvaI | CCWGG | 2 cut(s) | 49, 171 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 166, 472 |
| NdeII | GATC | 3 cut(s) | 275, 359, 393 |
| NlaIII | CATG | 4 cut(s) | 86, 110, 344, 458 |
| NlaIV | GGNNCC | 1 cut(s) | 523 |
| NsiI | ATGCAT | 1 cut(s) | 84 |
| NspI | RCATGY | 1 cut(s) | 458 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 106 |
| PctI | GAATGC | 1 cut(s) | 466 |
| PfeI | GAWTC | 1 cut(s) | 56 |
| PflFI | GACNNNGTC | 1 cut(s) | 98 |
| PkrI | GCNGC | 1 cut(s) | 319 |
| PleI | GAGTC | 2 cut(s) | 187, 259 |
| PpsI | GAGTC | 2 cut(s) | 187, 259 |
| PshBI | ATTAAT | 1 cut(s) | 402 |
| Psp1406I | AACGTT | 1 cut(s) | 39 |
| Psp6I | CCWGG | 2 cut(s) | 47, 169 |
| PspGI | CCWGG | 2 cut(s) | 47, 169 |
| PspN4I | GGNNCC | 1 cut(s) | 523 |
| PspPI | GGNCC | 1 cut(s) | 527 |
| PspXI | VCTCGAGB | 1 cut(s) | 119 |
| PsuI | RGATCY | 1 cut(s) | 359 |
| PsyI | GACNNNGTC | 1 cut(s) | 98 |
| RsaI | GTAC | 1 cut(s) | 523 |
| RsaNI | GTAC | 1 cut(s) | 522 |
| RseI | CAYNNNNRTG | 2 cut(s) | 111, 402 |
| SaqAI | TTAA | 5 cut(s) | 128, 155, 164, 293, 402 |
| SatI | GCNGC | 1 cut(s) | 318 |
| Sau3AI | GATC | 3 cut(s) | 275, 359, 393 |
| Sau96I | GGNCC | 1 cut(s) | 527 |
| SchI | GAGTC | 2 cut(s) | 188, 259 |
| ScrFI | CCNGG | 2 cut(s) | 49, 171 |
| SduI | GDGCHC | 1 cut(s) | 381 |
| SfaNI | GCATC | 2 cut(s) | 12, 69 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 527 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 111, 402 |
| SmlI | CTYRAG | 1 cut(s) | 119 |
| SmoI | CTYRAG | 1 cut(s) | 119 |
| Sse9I | AATT | 1 cut(s) | 289 |
| SspI | AATATT | 1 cut(s) | 16 |
| SspMI | CTAG | 3 cut(s) | 98, 408, 501 |
| StyD4I | CCNGG | 2 cut(s) | 47, 169 |
| TaaI | ACNGT | 1 cut(s) | 229 |
| TaiI | ACGT | 1 cut(s) | 42 |
| TaqI | TCGA | 1 cut(s) | 120 |
| TasI | AATT | 1 cut(s) | 289 |
| TfiI | GAWTC | 1 cut(s) | 56 |
| Tru1I | TTAA | 5 cut(s) | 128, 155, 164, 293, 402 |
| Tru9I | TTAA | 5 cut(s) | 128, 155, 164, 293, 402 |
| TscAI | CASTG | 2 cut(s) | 150, 468 |
| TseI | GCWGC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 5 cut(s) | 17, 95, 129, 369, 401 |
| TspGWI | ACGGA | 1 cut(s) | 191 |
| TspRI | CASTG | 2 cut(s) | 150, 468 |
| Tth111I | GACNNNGTC | 1 cut(s) | 98 |
| VpaK11BI | GGWCC | 1 cut(s) | 527 |
| VspI | ATTAAT | 1 cut(s) | 402 |
| XapI | RAATTY | 1 cut(s) | 289 |
| XceI | RCATGY | 1 cut(s) | 458 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XspI | CTAG | 3 cut(s) | 98, 408, 501 |
| Zsp2I | ATGCAT | 1 cut(s) | 84 |