gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 8 - 168 | 1.8e-21 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 46 |
| Acc36I | ACCTGC | 2 cut(s) | 46, 477 |
| AccB1I | GGYRCC | 1 cut(s) | 343 |
| AccI | GTMKAC | 1 cut(s) | 157 |
| AciI | CCGC | 1 cut(s) | 321 |
| AclWI | GGATC | 1 cut(s) | 342 |
| AcsI | RAATTY | 1 cut(s) | 206 |
| AflII | CTTAAG | 1 cut(s) | 410 |
| AgsI | TTSAA | 4 cut(s) | 76, 211, 404, 493 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 340, 372 |
| AluBI | AGCT | 2 cut(s) | 176, 409 |
| AluI | AGCT | 2 cut(s) | 176, 409 |
| Alw21I | GWGCWC | 1 cut(s) | 475 |
| Alw26I | GTCTC | 1 cut(s) | 452 |
| Alw44I | GTGCAC | 1 cut(s) | 471 |
| AlwI | GGATC | 1 cut(s) | 342 |
| ApaLI | GTGCAC | 1 cut(s) | 471 |
| ApeKI | GCWGC | 1 cut(s) | 317 |
| ApoI | RAATTY | 1 cut(s) | 206 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 270, 302 |
| AspS9I | GGNCC | 1 cut(s) | 129 |
| AsuHPI | GGTGA | 1 cut(s) | 524 |
| AvaII | GGWCC | 1 cut(s) | 129 |
| BaeGI | GKGCMC | 1 cut(s) | 475 |
| BanI | GGYRCC | 1 cut(s) | 343 |
| Bbv12I | GWGCWC | 1 cut(s) | 475 |
| BbvI | GCAGC | 1 cut(s) | 304 |
| BccI | CCATC | 3 cut(s) | 140, 226, 266 |
| BcoDI | GTCTC | 1 cut(s) | 452 |
| BfmI | CTRYAG | 2 cut(s) | 39, 60 |
| BfrI | CTTAAG | 1 cut(s) | 410 |
| BfuAI | ACCTGC | 2 cut(s) | 46, 477 |
| BisI | GCNGC | 2 cut(s) | 318, 321 |
| BlsI | GCNGC | 2 cut(s) | 319, 322 |
| Bme18I | GGWCC | 1 cut(s) | 129 |
| BmgT120I | GGNCC | 1 cut(s) | 129 |
| BmiI | GGNNCC | 1 cut(s) | 345 |
| BpmI | CTGGAG | 1 cut(s) | 359 |
| Bpu10I | CCTNAGC | 1 cut(s) | 177 |
| BpuEI | CTTGAG | 2 cut(s) | 209, 314 |
| BsaBI | GATNNNNATC | 1 cut(s) | 464 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 473, 503 |
| Bse8I | GATNNNNATC | 1 cut(s) | 464 |
| BseGI | GGATG | 2 cut(s) | 34, 383 |
| BseJI | GATNNNNATC | 1 cut(s) | 464 |
| BseMII | CTCAG | 4 cut(s) | 11, 72, 210, 384 |
| BseRI | GAGGAG | 1 cut(s) | 494 |
| BseSI | GKGCMC | 1 cut(s) | 475 |
| BseXI | GCAGC | 1 cut(s) | 304 |
| BshNI | GGYRCC | 1 cut(s) | 343 |
| BsiHKAI | GWGCWC | 1 cut(s) | 475 |
| BsmAI | GTCTC | 1 cut(s) | 452 |
| Bsp1286I | GDGCHC | 1 cut(s) | 475 |
| Bsp143I | GATC | 1 cut(s) | 334 |
| BspACI | CCGC | 1 cut(s) | 321 |
| BspCNI | CTCAG | 4 cut(s) | 12, 73, 211, 385 |
| BspHI | TCATGA | 1 cut(s) | 120 |
| BspLI | GGNNCC | 1 cut(s) | 345 |
| BspMAI | CTGCAG | 2 cut(s) | 43, 64 |
| BspMI | ACCTGC | 2 cut(s) | 46, 477 |
| BspPI | GGATC | 1 cut(s) | 342 |
| BspT107I | GGYRCC | 1 cut(s) | 343 |
| BspTI | CTTAAG | 1 cut(s) | 410 |
| BssMI | GATC | 1 cut(s) | 334 |
| BssNAI | GTATAC | 1 cut(s) | 158 |
| Bst1107I | GTATAC | 1 cut(s) | 158 |
| Bst4CI | ACNGT | 1 cut(s) | 162 |
| BstAFI | CTTAAG | 1 cut(s) | 410 |
| BstDEI | CTNAG | 5 cut(s) | 20, 81, 177, 219, 393 |
| BstF5I | GGATG | 2 cut(s) | 34, 383 |
| BstKTI | GATC | 1 cut(s) | 337 |
| BstMAI | GTCTC | 1 cut(s) | 452 |
| BstMBI | GATC | 1 cut(s) | 334 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 200 |
| BstSFI | CTRYAG | 2 cut(s) | 39, 60 |
| BstSLI | GKGCMC | 1 cut(s) | 475 |
| BstV1I | GCAGC | 1 cut(s) | 304 |
| BstX2I | RGATCY | 1 cut(s) | 334 |
| BstYI | RGATCY | 1 cut(s) | 334 |
| BstZ17I | GTATAC | 1 cut(s) | 158 |
| BtsCI | GGATG | 2 cut(s) | 34, 383 |
| BtsI | GCAGTG | 2 cut(s) | 48, 57 |
| BtsIMutI | CAGTG | 5 cut(s) | 17, 48, 57, 142, 251 |
| BveI | ACCTGC | 2 cut(s) | 46, 477 |
| CciI | TCATGA | 1 cut(s) | 120 |
| Cfr13I | GGNCC | 1 cut(s) | 129 |
| CviAII | CATG | 4 cut(s) | 115, 121, 165, 373 |
| CviJI | RGCY | 7 cut(s) | 110, 176, 182, 194, 317, 377, 409 |
| CviKI_1 | RGCY | 7 cut(s) | 110, 176, 182, 194, 317, 377, 409 |
| DdeI | CTNAG | 5 cut(s) | 20, 81, 177, 219, 393 |
| DpnI | GATC | 1 cut(s) | 336 |
| DpnII | GATC | 1 cut(s) | 334 |
| Eco47I | GGWCC | 1 cut(s) | 129 |
| FaeI | CATG | 4 cut(s) | 118, 124, 168, 376 |
| FaiI | YATR | 9 cut(s) | 9, 116, 122, 158, 166, 297, 299, 374, 421 |
| FatI | CATG | 4 cut(s) | 114, 120, 164, 372 |
| FblI | GTMKAC | 1 cut(s) | 157 |
| Fnu4HI | GCNGC | 2 cut(s) | 318, 321 |
| FokI | GGATG | 2 cut(s) | 41, 370 |
| Fsp4HI | GCNGC | 2 cut(s) | 318, 321 |
| GluI | GCNGC | 2 cut(s) | 318, 321 |
| GsuI | CTGGAG | 1 cut(s) | 359 |
| Hin1II | CATG | 4 cut(s) | 118, 124, 168, 376 |
| HinfI | GANTC | 4 cut(s) | 356, 395, 445, 493 |
| HphI | GGTGA | 1 cut(s) | 524 |
| Hpy166II | GTNNAC | 4 cut(s) | 158, 370, 473, 515 |
| Hpy188I | TCNGA | 3 cut(s) | 82, 220, 290 |
| Hpy188III | TCNNGA | 5 cut(s) | 121, 211, 338, 392, 449 |
| Hpy8I | GTNNAC | 4 cut(s) | 158, 370, 473, 515 |
| HpyAV | CCTTC | 1 cut(s) | 398 |
| HpyCH4III | ACNGT | 1 cut(s) | 162 |
| HpyCH4V | TGCA | 5 cut(s) | 17, 41, 62, 473, 500 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 200 |
| HpyF3I | CTNAG | 5 cut(s) | 20, 81, 177, 219, 393 |
| Hsp92II | CATG | 4 cut(s) | 118, 124, 168, 376 |
| Kzo9I | GATC | 1 cut(s) | 334 |
| LmnI | GCTCC | 1 cut(s) | 200 |
| LpnPI | CCDG | 5 cut(s) | 51, 254, 323, 405, 472 |
| Lsp1109I | GCAGC | 1 cut(s) | 304 |
| MaeIII | GTNAC | 2 cut(s) | 43, 167 |
| MalI | GATC | 1 cut(s) | 336 |
| MboI | GATC | 1 cut(s) | 334 |
| MfeI | CAATTG | 1 cut(s) | 348 |
| MflI | RGATCY | 1 cut(s) | 334 |
| MhlI | GDGCHC | 1 cut(s) | 475 |
| MluCI | AATT | 2 cut(s) | 206, 348 |
| MlyI | GAGTC | 2 cut(s) | 404, 454 |
| MmeI | TCCRAC | 1 cut(s) | 178 |
| MnlI | CCTC | 9 cut(s) | 15, 19, 133, 143, 184, 307, 334, 338, 472 |
| MseI | TTAA | 1 cut(s) | 411 |
| MslI | CAYNNNNRTG | 1 cut(s) | 119 |
| MspCI | CTTAAG | 1 cut(s) | 410 |
| MunI | CAATTG | 1 cut(s) | 348 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 200 |
| NdeII | GATC | 1 cut(s) | 334 |
| NlaIII | CATG | 4 cut(s) | 118, 124, 168, 376 |
| NlaIV | GGNNCC | 1 cut(s) | 345 |
| NmuCI | GTSAC | 2 cut(s) | 43, 167 |
| PagI | TCATGA | 1 cut(s) | 120 |
| PaqCI | CACCTGC | 1 cut(s) | 46 |
| PfeI | GAWTC | 2 cut(s) | 356, 493 |
| PkrI | GCNGC | 2 cut(s) | 319, 322 |
| PleI | GAGTC | 2 cut(s) | 403, 453 |
| PpsI | GAGTC | 2 cut(s) | 403, 453 |
| PspN4I | GGNNCC | 1 cut(s) | 345 |
| PspPI | GGNCC | 1 cut(s) | 129 |
| PstI | CTGCAG | 2 cut(s) | 43, 64 |
| PsuI | RGATCY | 1 cut(s) | 334 |
| RseI | CAYNNNNRTG | 1 cut(s) | 119 |
| SaqAI | TTAA | 1 cut(s) | 411 |
| SatI | GCNGC | 2 cut(s) | 318, 321 |
| Sau3AI | GATC | 1 cut(s) | 334 |
| Sau96I | GGNCC | 1 cut(s) | 129 |
| SchI | GAGTC | 2 cut(s) | 404, 454 |
| SduI | GDGCHC | 1 cut(s) | 475 |
| SfcI | CTRYAG | 2 cut(s) | 39, 60 |
| SinI | GGWCC | 1 cut(s) | 129 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 119 |
| SmlI | CTYRAG | 3 cut(s) | 188, 329, 410 |
| SmoI | CTYRAG | 3 cut(s) | 188, 329, 410 |
| Sse9I | AATT | 2 cut(s) | 206, 348 |
| SsiI | CCGC | 1 cut(s) | 321 |
| TaaI | ACNGT | 1 cut(s) | 162 |
| TaqI | TCGA | 2 cut(s) | 270, 450 |
| TasI | AATT | 2 cut(s) | 206, 348 |
| TauI | GCSGC | 1 cut(s) | 323 |
| TfiI | GAWTC | 2 cut(s) | 356, 493 |
| Tru1I | TTAA | 1 cut(s) | 411 |
| Tru9I | TTAA | 1 cut(s) | 411 |
| TscAI | CASTG | 5 cut(s) | 24, 48, 64, 142, 258 |
| TseFI | GTSAC | 2 cut(s) | 43, 167 |
| TseI | GCWGC | 1 cut(s) | 317 |
| Tsp45I | GTSAC | 2 cut(s) | 43, 167 |
| TspDTI | ATGAA | 2 cut(s) | 45, 137 |
| TspRI | CASTG | 5 cut(s) | 24, 48, 64, 142, 258 |
| Vha464I | CTTAAG | 1 cut(s) | 410 |
| VneI | GTGCAC | 1 cut(s) | 471 |
| VpaK11BI | GGWCC | 1 cut(s) | 129 |
| XapI | RAATTY | 1 cut(s) | 206 |
| XmiI | GTMKAC | 1 cut(s) | 157 |