gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 2 - 133 | 2.4e-11 | gag-polypeptide of LTR copia-type |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 614 |
| AcsI | RAATTY | 1 cut(s) | 101 |
| AcuI | CTGAAG | 1 cut(s) | 144 |
| AfaI | GTAC | 1 cut(s) | 367 |
| AgsI | TTSAA | 2 cut(s) | 247, 266 |
| AjnI | CCWGG | 1 cut(s) | 81 |
| AluBI | AGCT | 4 cut(s) | 89, 122, 304, 451 |
| AluI | AGCT | 4 cut(s) | 89, 122, 304, 451 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 1 cut(s) | 476 |
| ApoI | RAATTY | 1 cut(s) | 101 |
| AspS9I | GGNCC | 1 cut(s) | 4 |
| BaeGI | GKGCMC | 1 cut(s) | 617 |
| BanI | GGYRCC | 1 cut(s) | 614 |
| BbvI | GCAGC | 1 cut(s) | 463 |
| BciT130I | CCWGG | 1 cut(s) | 83 |
| BfmI | CTRYAG | 1 cut(s) | 90 |
| BisI | GCNGC | 1 cut(s) | 477 |
| BlsI | GCNGC | 1 cut(s) | 478 |
| Bme1390I | CCNGG | 1 cut(s) | 83 |
| BmgT120I | GGNCC | 1 cut(s) | 4 |
| BmiI | GGNNCC | 2 cut(s) | 341, 616 |
| BmrFI | CCNGG | 1 cut(s) | 83 |
| BmsI | GCATC | 1 cut(s) | 228 |
| BpuEI | CTTGAG | 2 cut(s) | 254, 354 |
| BsaJI | CCNNGG | 1 cut(s) | 618 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 386, 416 |
| Bse1I | ACTGG | 2 cut(s) | 178, 514 |
| BseBI | CCWGG | 1 cut(s) | 83 |
| BseDI | CCNNGG | 1 cut(s) | 618 |
| BseMII | CTCAG | 2 cut(s) | 338, 420 |
| BseNI | ACTGG | 2 cut(s) | 178, 514 |
| BseRI | GAGGAG | 1 cut(s) | 623 |
| BseSI | GKGCMC | 1 cut(s) | 617 |
| BseXI | GCAGC | 1 cut(s) | 463 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BshNI | GGYRCC | 1 cut(s) | 614 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bsp1286I | GDGCHC | 1 cut(s) | 617 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspCNI | CTCAG | 2 cut(s) | 337, 421 |
| BspLI | GGNNCC | 2 cut(s) | 341, 616 |
| BspT107I | GGYRCC | 1 cut(s) | 614 |
| BsrI | ACTGG | 2 cut(s) | 178, 514 |
| BssECI | CCNNGG | 1 cut(s) | 618 |
| Bst2UI | CCWGG | 1 cut(s) | 83 |
| Bst4CI | ACNGT | 2 cut(s) | 40, 409 |
| Bst6I | CTCTTC | 1 cut(s) | 548 |
| BstC8I | GCNNGC | 1 cut(s) | 302 |
| BstDEI | CTNAG | 2 cut(s) | 324, 429 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 531 |
| BstNI | CCWGG | 1 cut(s) | 83 |
| BstNSI | RCATGY | 2 cut(s) | 272, 443 |
| BstSCI | CCNGG | 1 cut(s) | 81 |
| BstSFI | CTRYAG | 1 cut(s) | 90 |
| BstSLI | GKGCMC | 1 cut(s) | 617 |
| BstV1I | GCAGC | 1 cut(s) | 463 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtsIMutI | CAGTG | 2 cut(s) | 171, 272 |
| Cac8I | GCNNGC | 1 cut(s) | 302 |
| Cfr13I | GGNCC | 1 cut(s) | 4 |
| Csp6I | GTAC | 1 cut(s) | 366 |
| CviAII | CATG | 3 cut(s) | 28, 269, 440 |
| CviQI | GTAC | 1 cut(s) | 366 |
| DdeI | CTNAG | 2 cut(s) | 324, 429 |
| DraI | TTTAAA | 1 cut(s) | 106 |
| Eam1104I | CTCTTC | 1 cut(s) | 548 |
| EarI | CTCTTC | 1 cut(s) | 548 |
| Eco57I | CTGAAG | 1 cut(s) | 144 |
| EcoRII | CCWGG | 1 cut(s) | 81 |
| FaeI | CATG | 3 cut(s) | 31, 272, 443 |
| FatI | CATG | 3 cut(s) | 27, 268, 439 |
| Fnu4HI | GCNGC | 1 cut(s) | 477 |
| Fsp4HI | GCNGC | 1 cut(s) | 477 |
| GluI | GCNGC | 1 cut(s) | 477 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| Hin1II | CATG | 3 cut(s) | 31, 272, 443 |
| HincII | GTYRAC | 2 cut(s) | 405, 421 |
| HindII | GTYRAC | 2 cut(s) | 405, 421 |
| Hpy166II | GTNNAC | 4 cut(s) | 405, 412, 421, 601 |
| Hpy188I | TCNGA | 1 cut(s) | 327 |
| Hpy188III | TCNNGA | 1 cut(s) | 371 |
| Hpy8I | GTNNAC | 4 cut(s) | 405, 412, 421, 601 |
| HpyAV | CCTTC | 2 cut(s) | 55, 322 |
| HpyCH4III | ACNGT | 2 cut(s) | 40, 409 |
| HpyCH4V | TGCA | 3 cut(s) | 142, 272, 534 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 531 |
| HpyF3I | CTNAG | 2 cut(s) | 324, 429 |
| Hsp92II | CATG | 3 cut(s) | 31, 272, 443 |
| LmnI | GCTCC | 1 cut(s) | 339 |
| Lsp1109I | GCAGC | 1 cut(s) | 463 |
| LweI | GCATC | 1 cut(s) | 228 |
| MaeIII | GTNAC | 1 cut(s) | 569 |
| MboII | GAAGA | 2 cut(s) | 211, 565 |
| MhlI | GDGCHC | 1 cut(s) | 617 |
| MluCI | AATT | 2 cut(s) | 101, 577 |
| MnlI | CCTC | 8 cut(s) | 17, 139, 384, 549, 587, 601, 604, 613 |
| MseI | TTAA | 1 cut(s) | 105 |
| MspA1I | CMGCKG | 1 cut(s) | 304 |
| MspR9I | CCNGG | 1 cut(s) | 83 |
| MvaI | CCWGG | 1 cut(s) | 83 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 531 |
| NlaIII | CATG | 3 cut(s) | 31, 272, 443 |
| NlaIV | GGNNCC | 2 cut(s) | 341, 616 |
| NspI | RCATGY | 2 cut(s) | 272, 443 |
| PflFI | GACNNNGTC | 1 cut(s) | 257 |
| PkrI | GCNGC | 1 cut(s) | 478 |
| Psp6I | CCWGG | 1 cut(s) | 81 |
| PspGI | CCWGG | 1 cut(s) | 81 |
| PspN4I | GGNNCC | 2 cut(s) | 341, 616 |
| PspPI | GGNCC | 1 cut(s) | 4 |
| PsyI | GACNNNGTC | 1 cut(s) | 257 |
| PvuII | CAGCTG | 1 cut(s) | 304 |
| RsaI | GTAC | 1 cut(s) | 367 |
| RsaNI | GTAC | 1 cut(s) | 366 |
| SaqAI | TTAA | 1 cut(s) | 105 |
| SatI | GCNGC | 1 cut(s) | 477 |
| Sau96I | GGNCC | 1 cut(s) | 4 |
| ScrFI | CCNGG | 1 cut(s) | 83 |
| SduI | GDGCHC | 1 cut(s) | 617 |
| SetI | ASST | 9 cut(s) | 84, 91, 124, 234, 306, 430, 453, 493, 511 |
| SfaNI | GCATC | 1 cut(s) | 228 |
| SfcI | CTRYAG | 1 cut(s) | 90 |
| SmlI | CTYRAG | 2 cut(s) | 233, 369 |
| SmoI | CTYRAG | 2 cut(s) | 233, 369 |
| Sse9I | AATT | 2 cut(s) | 101, 577 |
| StyD4I | CCNGG | 1 cut(s) | 81 |
| TaaI | ACNGT | 2 cut(s) | 40, 409 |
| TasI | AATT | 2 cut(s) | 101, 577 |
| TatI | WGTACW | 1 cut(s) | 365 |
| Tru1I | TTAA | 1 cut(s) | 105 |
| Tru9I | TTAA | 1 cut(s) | 105 |
| TscAI | CASTG | 2 cut(s) | 178, 279 |
| TseI | GCWGC | 1 cut(s) | 476 |
| TspDTI | ATGAA | 3 cut(s) | 129, 212, 566 |
| TspRI | CASTG | 2 cut(s) | 178, 279 |
| Tth111I | GACNNNGTC | 1 cut(s) | 257 |
| XapI | RAATTY | 1 cut(s) | 101 |
| XceI | RCATGY | 2 cut(s) | 272, 443 |