gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 61 - 207 | 6.2e-19 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 441 |
| AclWI | GGATC | 2 cut(s) | 79, 403 |
| AcoI | YGGCCR | 1 cut(s) | 787 |
| AcsI | RAATTY | 1 cut(s) | 741 |
| AfaI | GTAC | 2 cut(s) | 36, 808 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 68, 675 |
| AflII | CTTAAG | 1 cut(s) | 794 |
| AgsI | TTSAA | 8 cut(s) | 16, 59, 331, 367, 424, 460, 524, 817 |
| AluBI | AGCT | 7 cut(s) | 173, 296, 448, 519, 548, 722, 821 |
| AluI | AGCT | 7 cut(s) | 173, 296, 448, 519, 548, 722, 821 |
| AlwI | GGATC | 2 cut(s) | 79, 403 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 731 |
| Ama87I | CYCGRG | 1 cut(s) | 25 |
| AoxI | GGCC | 2 cut(s) | 345, 787 |
| ApeKI | GCWGC | 1 cut(s) | 273 |
| ApoI | RAATTY | 1 cut(s) | 741 |
| AspS9I | GGNCC | 1 cut(s) | 346 |
| AsuHPI | GGTGA | 1 cut(s) | 332 |
| AsuNHI | GCTAGC | 1 cut(s) | 173 |
| AvaI | CYCGRG | 1 cut(s) | 25 |
| BbvI | GCAGC | 1 cut(s) | 285 |
| BccI | CCATC | 1 cut(s) | 81 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 574, 608 |
| BciVI | GTATCC | 1 cut(s) | 834 |
| BfaI | CTAG | 2 cut(s) | 174, 545 |
| BfmI | CTRYAG | 3 cut(s) | 168, 297, 775 |
| BfrI | CTTAAG | 1 cut(s) | 794 |
| BfuI | GTATCC | 1 cut(s) | 834 |
| BglII | AGATCT | 1 cut(s) | 130 |
| BisI | GCNGC | 2 cut(s) | 274, 441 |
| BlpI | GCTNAGC | 1 cut(s) | 444 |
| BlsI | GCNGC | 2 cut(s) | 275, 442 |
| BmeT110I | CYCGRG | 1 cut(s) | 25 |
| BmgT120I | GGNCC | 1 cut(s) | 346 |
| BmiI | GGNNCC | 1 cut(s) | 403 |
| BmsI | GCATC | 1 cut(s) | 471 |
| BmtI | GCTAGC | 1 cut(s) | 177 |
| BpmI | CTGGAG | 2 cut(s) | 138, 708 |
| Bpu10I | CCTNAGC | 1 cut(s) | 718 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 444 |
| BsaBI | GATNNNNATC | 1 cut(s) | 584 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 68, 675 |
| Bse1I | ACTGG | 3 cut(s) | 73, 180, 814 |
| Bse8I | GATNNNNATC | 1 cut(s) | 584 |
| BseJI | GATNNNNATC | 1 cut(s) | 584 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 68, 675 |
| BseNI | ACTGG | 3 cut(s) | 73, 180, 814 |
| BseXI | GCAGC | 1 cut(s) | 285 |
| BshFI | GGCC | 2 cut(s) | 347, 789 |
| BsiHKCI | CYCGRG | 1 cut(s) | 25 |
| BsiSI | CCGG | 1 cut(s) | 786 |
| BslFI | GGGAC | 1 cut(s) | 578 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 68, 675 |
| BsmFI | GGGAC | 1 cut(s) | 578 |
| BsnI | GGCC | 2 cut(s) | 347, 789 |
| BsoBI | CYCGRG | 1 cut(s) | 25 |
| Bsp143I | GATC | 4 cut(s) | 71, 130, 395, 585 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 444 |
| BspACI | CCGC | 1 cut(s) | 441 |
| BspANI | GGCC | 2 cut(s) | 347, 789 |
| BspHI | TCATGA | 1 cut(s) | 48 |
| BspLI | GGNNCC | 1 cut(s) | 403 |
| BspMAI | CTGCAG | 1 cut(s) | 779 |
| BspOI | GCTAGC | 1 cut(s) | 177 |
| BspPI | GGATC | 2 cut(s) | 79, 403 |
| BspTI | CTTAAG | 1 cut(s) | 794 |
| BsrI | ACTGG | 3 cut(s) | 73, 180, 814 |
| BssMI | GATC | 4 cut(s) | 71, 130, 395, 585 |
| Bst6I | CTCTTC | 1 cut(s) | 846 |
| BstAFI | CTTAAG | 1 cut(s) | 794 |
| BstC8I | GCNNGC | 2 cut(s) | 175, 517 |
| BstDEI | CTNAG | 5 cut(s) | 113, 127, 307, 444, 718 |
| BstKTI | GATC | 4 cut(s) | 74, 133, 398, 588 |
| BstMBI | GATC | 4 cut(s) | 71, 130, 395, 585 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 353 |
| BstSFI | CTRYAG | 3 cut(s) | 168, 297, 775 |
| BstV1I | GCAGC | 1 cut(s) | 285 |
| BstX2I | RGATCY | 1 cut(s) | 130 |
| BstYI | RGATCY | 1 cut(s) | 130 |
| BsuI | GTATCC | 1 cut(s) | 834 |
| BsuRI | GGCC | 2 cut(s) | 347, 789 |
| BtsIMutI | CAGTG | 1 cut(s) | 187 |
| Cac8I | GCNNGC | 2 cut(s) | 175, 517 |
| CaiI | CAGNNNCTG | 1 cut(s) | 731 |
| CciI | TCATGA | 1 cut(s) | 48 |
| Cfr13I | GGNCC | 1 cut(s) | 346 |
| Csp6I | GTAC | 2 cut(s) | 35, 807 |
| CviAII | CATG | 2 cut(s) | 49, 253 |
| CviQI | GTAC | 2 cut(s) | 35, 807 |
| DdeI | CTNAG | 5 cut(s) | 113, 127, 307, 444, 718 |
| DpnI | GATC | 4 cut(s) | 73, 132, 397, 587 |
| DpnII | GATC | 4 cut(s) | 71, 130, 395, 585 |
| DraI | TTTAAA | 1 cut(s) | 42 |
| EaeI | YGGCCR | 1 cut(s) | 787 |
| Eam1104I | CTCTTC | 1 cut(s) | 846 |
| EarI | CTCTTC | 1 cut(s) | 846 |
| Eco88I | CYCGRG | 1 cut(s) | 25 |
| FaeI | CATG | 2 cut(s) | 52, 256 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 755, 787 |
| FaqI | GGGAC | 1 cut(s) | 578 |
| FatI | CATG | 2 cut(s) | 48, 252 |
| Fnu4HI | GCNGC | 2 cut(s) | 274, 441 |
| Fsp4HI | GCNGC | 2 cut(s) | 274, 441 |
| FspBI | CTAG | 2 cut(s) | 174, 545 |
| GluI | GCNGC | 2 cut(s) | 274, 441 |
| GsuI | CTGGAG | 2 cut(s) | 138, 708 |
| HaeIII | GGCC | 2 cut(s) | 347, 789 |
| HapII | CCGG | 1 cut(s) | 786 |
| Hin1II | CATG | 2 cut(s) | 52, 256 |
| HincII | GTYRAC | 2 cut(s) | 121, 828 |
| HindII | GTYRAC | 2 cut(s) | 121, 828 |
| HindIII | AAGCTT | 1 cut(s) | 819 |
| HinfI | GANTC | 6 cut(s) | 220, 260, 311, 327, 640, 734 |
| HpaI | GTTAAC | 1 cut(s) | 828 |
| HpaII | CCGG | 1 cut(s) | 786 |
| HphI | GGTGA | 1 cut(s) | 332 |
| Hpy166II | GTNNAC | 3 cut(s) | 121, 185, 828 |
| Hpy188I | TCNGA | 4 cut(s) | 259, 475, 747, 759 |
| Hpy188III | TCNNGA | 6 cut(s) | 9, 49, 155, 399, 421, 628 |
| Hpy8I | GTNNAC | 3 cut(s) | 121, 185, 828 |
| HpyAV | CCTTC | 2 cut(s) | 610, 667 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 231, 356, 595, 777 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 353 |
| HpyF3I | CTNAG | 5 cut(s) | 113, 127, 307, 444, 718 |
| Hsp92II | CATG | 2 cut(s) | 52, 256 |
| KspAI | GTTAAC | 1 cut(s) | 828 |
| Kzo9I | GATC | 4 cut(s) | 71, 130, 395, 585 |
| LmnI | GCTCC | 1 cut(s) | 727 |
| Lsp1109I | GCAGC | 1 cut(s) | 285 |
| LweI | GCATC | 1 cut(s) | 471 |
| MaeI | CTAG | 2 cut(s) | 174, 545 |
| MaeIII | GTNAC | 1 cut(s) | 767 |
| MalI | GATC | 4 cut(s) | 73, 132, 397, 587 |
| MboI | GATC | 4 cut(s) | 71, 130, 395, 585 |
| MboII | GAAGA | 4 cut(s) | 125, 293, 472, 863 |
| MfeI | CAATTG | 1 cut(s) | 315 |
| MflI | RGATCY | 1 cut(s) | 130 |
| MluCI | AATT | 5 cut(s) | 315, 371, 609, 710, 741 |
| MnlI | CCTC | 2 cut(s) | 72, 162 |
| MseI | TTAA | 5 cut(s) | 41, 81, 612, 795, 827 |
| MspCI | CTTAAG | 1 cut(s) | 794 |
| MspI | CCGG | 1 cut(s) | 786 |
| MunI | CAATTG | 1 cut(s) | 315 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 353 |
| NdeII | GATC | 4 cut(s) | 71, 130, 395, 585 |
| NheI | GCTAGC | 1 cut(s) | 173 |
| NlaIII | CATG | 2 cut(s) | 52, 256 |
| NlaIV | GGNNCC | 1 cut(s) | 403 |
| PagI | TCATGA | 1 cut(s) | 48 |
| PfeI | GAWTC | 6 cut(s) | 220, 260, 311, 327, 640, 734 |
| PkrI | GCNGC | 2 cut(s) | 275, 442 |
| PspN4I | GGNNCC | 1 cut(s) | 403 |
| PspPI | GGNCC | 1 cut(s) | 346 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 371, 403 |
| PstI | CTGCAG | 1 cut(s) | 779 |
| PstNI | CAGNNNCTG | 1 cut(s) | 731 |
| PsuI | RGATCY | 1 cut(s) | 130 |
| RsaI | GTAC | 2 cut(s) | 36, 808 |
| RsaNI | GTAC | 2 cut(s) | 35, 807 |
| SaqAI | TTAA | 5 cut(s) | 41, 81, 612, 795, 827 |
| SatI | GCNGC | 2 cut(s) | 274, 441 |
| Sau3AI | GATC | 4 cut(s) | 71, 130, 395, 585 |
| Sau96I | GGNCC | 1 cut(s) | 346 |
| SfaNI | GCATC | 1 cut(s) | 471 |
| SfcI | CTRYAG | 3 cut(s) | 168, 297, 775 |
| SmlI | CTYRAG | 1 cut(s) | 794 |
| SmoI | CTYRAG | 1 cut(s) | 794 |
| Sse9I | AATT | 5 cut(s) | 315, 371, 609, 710, 741 |
| SsiI | CCGC | 1 cut(s) | 441 |
| SspI | AATATT | 1 cut(s) | 197 |
| SspMI | CTAG | 2 cut(s) | 174, 545 |
| TaqI | TCGA | 3 cut(s) | 223, 584, 627 |
| TasI | AATT | 5 cut(s) | 315, 371, 609, 710, 741 |
| TatI | WGTACW | 1 cut(s) | 806 |
| TauI | GCSGC | 1 cut(s) | 443 |
| TfiI | GAWTC | 6 cut(s) | 220, 260, 311, 327, 640, 734 |
| Tru1I | TTAA | 5 cut(s) | 41, 81, 612, 795, 827 |
| Tru9I | TTAA | 5 cut(s) | 41, 81, 612, 795, 827 |
| TscAI | CASTG | 1 cut(s) | 187 |
| TseI | GCWGC | 1 cut(s) | 273 |
| TspDTI | ATGAA | 6 cut(s) | 37, 65, 257, 392, 479, 618 |
| TspRI | CASTG | 1 cut(s) | 187 |
| Vha464I | CTTAAG | 1 cut(s) | 794 |
| XapI | RAATTY | 1 cut(s) | 741 |
| XspI | CTAG | 2 cut(s) | 174, 545 |