Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DDE_Tnp_4 | PF13359 | 4 - 130 | 9.9e-18 | DDE superfamily endonuclease |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 521 |
| AccII | CGCG | 1 cut(s) | 577 |
| AciI | CCGC | 3 cut(s) | 327, 521, 575 |
| AcsI | RAATTY | 2 cut(s) | 119, 419 |
| AcuI | CTGAAG | 1 cut(s) | 573 |
| AcyI | GRCGYC | 1 cut(s) | 154 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 87, 176 |
| AgsI | TTSAA | 6 cut(s) | 63, 104, 247, 322, 431, 488 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 90, 122 |
| AluBI | AGCT | 4 cut(s) | 167, 371, 557, 713 |
| AluI | AGCT | 4 cut(s) | 167, 371, 557, 713 |
| ApeKI | GCWGC | 1 cut(s) | 710 |
| ApoI | RAATTY | 2 cut(s) | 119, 419 |
| AsuHPI | GGTGA | 1 cut(s) | 438 |
| BccI | CCATC | 2 cut(s) | 228, 457 |
| BfaI | CTAG | 2 cut(s) | 128, 464 |
| BisI | GCNGC | 1 cut(s) | 711 |
| BlsI | GCNGC | 1 cut(s) | 712 |
| BmsI | GCATC | 1 cut(s) | 67 |
| BoxI | GACNNNNGTC | 1 cut(s) | 259 |
| BpuEI | CTTGAG | 2 cut(s) | 96, 603 |
| BsaBI | GATNNNNATC | 1 cut(s) | 480 |
| BsaHI | GRCGYC | 1 cut(s) | 154 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 316, 346 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 87, 176 |
| Bse8I | GATNNNNATC | 1 cut(s) | 480 |
| BseGI | GGATG | 5 cut(s) | 220, 421, 455, 661, 706 |
| BseJI | GATNNNNATC | 1 cut(s) | 480 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 87, 176 |
| Bsh1236I | CGCG | 1 cut(s) | 577 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 87, 176 |
| BspACI | CCGC | 3 cut(s) | 327, 521, 575 |
| BspFNI | CGCG | 1 cut(s) | 577 |
| BsrBI | CCGCTC | 1 cut(s) | 521 |
| BssNI | GRCGYC | 1 cut(s) | 154 |
| Bst4CI | ACNGT | 1 cut(s) | 309 |
| BstACI | GRCGYC | 1 cut(s) | 154 |
| BstC8I | GCNNGC | 1 cut(s) | 235 |
| BstDEI | CTNAG | 2 cut(s) | 32, 163 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 85 |
| BstF5I | GGATG | 5 cut(s) | 220, 421, 455, 661, 706 |
| BstFNI | CGCG | 1 cut(s) | 577 |
| BstNSI | RCATGY | 1 cut(s) | 260 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 259 |
| BstUI | CGCG | 1 cut(s) | 577 |
| BtsCI | GGATG | 5 cut(s) | 220, 421, 455, 661, 706 |
| Cac8I | GCNNGC | 1 cut(s) | 235 |
| CseI | GACGC | 2 cut(s) | 162, 249 |
| CviAII | CATG | 3 cut(s) | 56, 257, 425 |
| CviJI | RGCY | 6 cut(s) | 167, 371, 527, 541, 557, 713 |
| CviKI_1 | RGCY | 6 cut(s) | 167, 371, 527, 541, 557, 713 |
| DdeI | CTNAG | 2 cut(s) | 32, 163 |
| DraI | TTTAAA | 1 cut(s) | 301 |
| Eco32I | GATATC | 1 cut(s) | 188 |
| Eco57I | CTGAAG | 1 cut(s) | 573 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 85 |
| EcoRV | GATATC | 1 cut(s) | 188 |
| FaeI | CATG | 3 cut(s) | 59, 260, 428 |
| FatI | CATG | 3 cut(s) | 55, 256, 424 |
| FauNDI | CATATG | 1 cut(s) | 651 |
| Fnu4HI | GCNGC | 1 cut(s) | 711 |
| FokI | GGATG | 5 cut(s) | 207, 428, 442, 668, 713 |
| Fsp4HI | GCNGC | 1 cut(s) | 711 |
| FspBI | CTAG | 2 cut(s) | 128, 464 |
| GluI | GCNGC | 1 cut(s) | 711 |
| HgaI | GACGC | 2 cut(s) | 162, 249 |
| Hin1I | GRCGYC | 1 cut(s) | 154 |
| Hin1II | CATG | 3 cut(s) | 59, 260, 428 |
| HincII | GTYRAC | 1 cut(s) | 506 |
| HindII | GTYRAC | 1 cut(s) | 506 |
| HinfI | GANTC | 3 cut(s) | 59, 443, 481 |
| HphI | GGTGA | 1 cut(s) | 438 |
| Hpy166II | GTNNAC | 2 cut(s) | 312, 506 |
| Hpy188III | TCNNGA | 5 cut(s) | 410, 464, 485, 599, 620 |
| Hpy8I | GTNNAC | 2 cut(s) | 312, 506 |
| Hpy99I | CGWCG | 1 cut(s) | 156 |
| HpyAV | CCTTC | 2 cut(s) | 38, 665 |
| HpyCH4III | ACNGT | 1 cut(s) | 309 |
| HpyCH4V | TGCA | 2 cut(s) | 233, 710 |
| HpyF3I | CTNAG | 2 cut(s) | 32, 163 |
| Hsp92I | GRCGYC | 1 cut(s) | 154 |
| Hsp92II | CATG | 3 cut(s) | 59, 260, 428 |
| LmnI | GCTCC | 1 cut(s) | 172 |
| LpnPI | CCDG | 2 cut(s) | 363, 447 |
| LweI | GCATC | 1 cut(s) | 67 |
| MaeI | CTAG | 2 cut(s) | 128, 464 |
| MaeIII | GTNAC | 1 cut(s) | 171 |
| MbiI | CCGCTC | 1 cut(s) | 521 |
| MboII | GAAGA | 5 cut(s) | 242, 386, 444, 485, 578 |
| MluCI | AATT | 7 cut(s) | 17, 65, 119, 158, 315, 359, 419 |
| MmeI | TCCRAC | 1 cut(s) | 673 |
| MseI | TTAA | 3 cut(s) | 71, 86, 300 |
| MslI | CAYNNNNRTG | 2 cut(s) | 26, 654 |
| MvnI | CGCG | 1 cut(s) | 577 |
| NdeI | CATATG | 1 cut(s) | 651 |
| NlaIII | CATG | 3 cut(s) | 59, 260, 428 |
| NspI | RCATGY | 1 cut(s) | 260 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 181, 223 |
| PfeI | GAWTC | 3 cut(s) | 59, 443, 481 |
| PkrI | GCNGC | 1 cut(s) | 712 |
| PshAI | GACNNNNGTC | 1 cut(s) | 259 |
| RseI | CAYNNNNRTG | 2 cut(s) | 26, 654 |
| SaqAI | TTAA | 3 cut(s) | 71, 86, 300 |
| SatI | GCNGC | 1 cut(s) | 711 |
| SfaNI | GCATC | 1 cut(s) | 67 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 26, 654 |
| SmlI | CTYRAG | 2 cut(s) | 111, 618 |
| SmoI | CTYRAG | 2 cut(s) | 111, 618 |
| Sse9I | AATT | 7 cut(s) | 17, 65, 119, 158, 315, 359, 419 |
| SsiI | CCGC | 3 cut(s) | 327, 521, 575 |
| SspMI | CTAG | 2 cut(s) | 128, 464 |
| TaaI | ACNGT | 1 cut(s) | 309 |
| TaqI | TCGA | 4 cut(s) | 151, 184, 226, 253 |
| TasI | AATT | 7 cut(s) | 17, 65, 119, 158, 315, 359, 419 |
| TfiI | GAWTC | 3 cut(s) | 59, 443, 481 |
| Tru1I | TTAA | 3 cut(s) | 71, 86, 300 |
| Tru9I | TTAA | 3 cut(s) | 71, 86, 300 |
| TseI | GCWGC | 1 cut(s) | 710 |
| TspDTI | ATGAA | 5 cut(s) | 10, 413, 432, 444, 606 |
| TspGWI | ACGGA | 1 cut(s) | 159 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 85 |
| XapI | RAATTY | 2 cut(s) | 119, 419 |
| XbaI | TCTAGA | 1 cut(s) | 463 |
| XceI | RCATGY | 1 cut(s) | 260 |
| XspI | CTAG | 2 cut(s) | 128, 464 |