Rh7DG437400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000101
Physical Location & Seq
Forward (+)
62315359 .. 62316897
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG437400.1

Sequence Viewer

Length: 639 bp
ATGGCGGAAACTAGTTCCCCCAATTCTTCTGCTGATGACCTCAAGAACCATGTAATGAAGATTTTCGAGGAAGCCACCAAAGACCGTGAGGACGAGTGCTTGAAAAGAGTATTTGGCACCATTGGGAGGAGCTACAATTCCCTTAACGATTATTCGATTATGTTGTTCAATACTATGGCAGATACCGGCATCATTGACAGAGCTAGAGAGATGTTTAAGCCTGTCTCTGACTTGGGCATTCTGTCTCCAGTGGCTGTCTTCACCATTGTGATTATGCTCTACGCCGGTGAGCGCAAGGCCAAGAGTGCTCTCAAGGTTTTCCAGCACATGATAGCCACTGGTGTCAACCCCGCCTGCTACACTTATGTTCAACTCATCACTGTACTTGCAACAGACTTTTCCAATGTAAAGTTCCTTAGGTATGCCAAGAAGTATTTTCTTGAAATGTTGGATAAGGGGATGAAGCCCAGTCCTACACCCTTCTGGAAGATTATGGAGGCCATTGCCTACCGAGAGCCAGTGGAGAAGGCCAAGGAGTTCCTTGAGCAGATAAAAGCCAAGGGGTTCATGCCTTCCGACAGTGGTTTTCACTACAAAGAGGCCTACCTTGCCGAAGGAATGCAAACACTGAAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

212

Amino Acids

24.08

Weight (kDa)

8.36

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 84 - 130 2.6e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 116
AciI CCGC 2 cut(s) 5, 351
AfaI GTAC 1 cut(s) 384
AfiI CCNNNNNNNGG 1 cut(s) 126
AgsI TTSAA 4 cut(s) 103, 169, 371, 443
AhlI ACTAGT 1 cut(s) 11
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 2 cut(s) 132, 203
AluI AGCT 2 cut(s) 132, 203
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 2 cut(s) 229, 249
AlwNI CAGNNNCTG 1 cut(s) 254
AoxI GGCC 4 cut(s) 297, 498, 528, 600
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 1 cut(s) 294
AsuHPI GGTGA 2 cut(s) 253, 299
AxyI CCTNAGG 1 cut(s) 416
BanI GGYRCC 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 310
BcoDI GTCTC 2 cut(s) 229, 249
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 204
BmiI GGNNCC 1 cut(s) 118
BmrI ACTGGG 1 cut(s) 462
BmsI GCATC 1 cut(s) 198
BmuI ACTGGG 1 cut(s) 462
BpiI GAAGAC 1 cut(s) 250
BpmI CTGGAG 1 cut(s) 231
BpuEI CTTGAG 3 cut(s) 26, 296, 563
BsaJI CCNNGG 2 cut(s) 531, 558
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse118I RCCGGY 2 cut(s) 185, 284
Bse1I ACTGG 4 cut(s) 248, 343, 468, 518
Bse21I CCTNAGG 1 cut(s) 416
Bse3DI GCAATG 1 cut(s) 501
BseDI CCNNGG 2 cut(s) 531, 558
BseGI GGATG 1 cut(s) 465
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMI GCAATG 1 cut(s) 501
BseNI ACTGG 4 cut(s) 248, 343, 468, 518
BseRI GAGGAG 1 cut(s) 142
BshFI GGCC 4 cut(s) 299, 500, 530, 602
BshNI GGYRCC 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 310
BsiSI CCGG 2 cut(s) 186, 285
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 2 cut(s) 229, 249
BsmI GAATGC 2 cut(s) 237, 624
BsnI GGCC 4 cut(s) 299, 500, 530, 602
Bsp1286I GDGCHC 1 cut(s) 310
BspACI CCGC 2 cut(s) 5, 351
BspANI GGCC 4 cut(s) 299, 500, 530, 602
BspLI GGNNCC 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 501
BsrFI RCCGGY 2 cut(s) 185, 284
BsrI ACTGG 4 cut(s) 248, 343, 468, 518
BssAI RCCGGY 2 cut(s) 185, 284
BssECI CCNNGG 2 cut(s) 531, 558
BssT1I CCWWGG 2 cut(s) 531, 558
Bst4CI ACNGT 3 cut(s) 86, 382, 581
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 416
BstF5I GGATG 1 cut(s) 465
BstHHI GCGC 1 cut(s) 294
BstMAI GTCTC 2 cut(s) 229, 249
BstMWI GCNNNNNNNGC 2 cut(s) 305, 608
BstV2I GAAGAC 1 cut(s) 250
Bsu36I CCTNAGG 1 cut(s) 416
BsuRI GGCC 4 cut(s) 299, 500, 530, 602
BtsCI GGATG 1 cut(s) 465
BtsIMutI CAGTG 6 cut(s) 255, 336, 378, 525, 586, 626
Cac8I GCNNGC 1 cut(s) 355
CaiI CAGNNNCTG 1 cut(s) 254
CfoI GCGC 1 cut(s) 294
Cfr10I RCCGGY 2 cut(s) 185, 284
Csp6I GTAC 1 cut(s) 383
CviAII CATG 3 cut(s) 50, 328, 568
CviQI GTAC 1 cut(s) 383
DdeI CTNAG 1 cut(s) 416
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 531, 558
Eco147I AGGCCT 1 cut(s) 602
Eco81I CCTNAGG 1 cut(s) 416
EcoT14I CCWWGG 2 cut(s) 531, 558
ErhI CCWWGG 2 cut(s) 531, 558
FaeI CATG 3 cut(s) 53, 331, 571
FatI CATG 3 cut(s) 49, 327, 567
FauI CCCGC 1 cut(s) 358
FokI GGATG 1 cut(s) 472
FspBI CTAG 2 cut(s) 12, 204
GlaI GCGC 1 cut(s) 293
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 4 cut(s) 299, 500, 530, 602
HapII CCGG 2 cut(s) 186, 285
HhaI GCGC 1 cut(s) 294
Hin1II CATG 3 cut(s) 53, 331, 571
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HpaII CCGG 2 cut(s) 186, 285
HphI GGTGA 2 cut(s) 253, 299
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 2 cut(s) 229, 577
Hpy188III TCNNGA 3 cut(s) 43, 440, 484
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 4 cut(s) 490, 520, 582, 608
HpyCH4III ACNGT 3 cut(s) 86, 382, 581
HpyCH4V TGCA 2 cut(s) 389, 622
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 608
HpyF3I CTNAG 1 cut(s) 416
Hsp92II CATG 3 cut(s) 53, 331, 571
HspAI GCGC 1 cut(s) 292
LmnI GCTCC 1 cut(s) 129
LweI GCATC 1 cut(s) 198
MaeI CTAG 2 cut(s) 12, 204
MboII GAAGA 4 cut(s) 18, 70, 250, 499
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 2 cut(s) 22, 136
MmeI TCCRAC 2 cut(s) 429, 600
MnlI CCTC 6 cut(s) 50, 61, 82, 120, 490, 592
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 2 cut(s) 144, 216
MslI CAYNNNNRTG 1 cut(s) 266
MspI CCGG 2 cut(s) 186, 285
Mva1269I GAATGC 2 cut(s) 237, 624
MwoI GCNNNNNNNGC 2 cut(s) 305, 608
NlaIII CATG 3 cut(s) 53, 331, 571
NlaIV GGNNCC 1 cut(s) 118
OliI CACNNNNGTG 1 cut(s) 266
PceI AGGCCT 1 cut(s) 602
PctI GAATGC 2 cut(s) 237, 624
PdmI GAANNNNTTC 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 254
RsaI GTAC 1 cut(s) 384
RsaNI GTAC 1 cut(s) 383
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 2 cut(s) 144, 216
SduI GDGCHC 1 cut(s) 310
SetI ASST 6 cut(s) 42, 134, 205, 318, 422, 609
SfaNI GCATC 1 cut(s) 198
SgrAI CRCCGGYG 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 3 cut(s) 41, 311, 542
SmoI CTYRAG 3 cut(s) 41, 311, 542
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 2 cut(s) 22, 136
SseBI AGGCCT 1 cut(s) 602
SsiI CCGC 2 cut(s) 5, 351
SspMI CTAG 2 cut(s) 12, 204
StuI AGGCCT 1 cut(s) 602
StyI CCWWGG 2 cut(s) 531, 558
TaaI ACNGT 3 cut(s) 86, 382, 581
TaqI TCGA 2 cut(s) 66, 155
TasI AATT 2 cut(s) 22, 136
TatI WGTACW 1 cut(s) 382
Tru1I TTAA 2 cut(s) 144, 216
Tru9I TTAA 2 cut(s) 144, 216
TscAI CASTG 6 cut(s) 255, 343, 385, 525, 586, 633
TspDTI ATGAA 3 cut(s) 71, 476, 556
TspRI CASTG 6 cut(s) 255, 343, 385, 525, 586, 633
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 2 cut(s) 12, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.