Rroxscaffold_3G00225580

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000101
Physical Location & Seq
Reverse (-)
8795925 .. 8796692
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225580.1

Sequence Viewer

Length: 768 bp
ATGAGATCAATGGCGGAAGCTAGTTCCCCCAATTCTTCTGCTGATGACCTCAAGAACCATGTAATGAAGATTTTCGAGGAAGCCACCAAAGACTGTGAGGACGAGTACTTGAAAGCAGTATTTGGCACCATTGGGAGGAGCTACGATTCCCTTAACGATTTTTCGATTAAGTTGTTCAATTCTATGGCAGATACCGGCATCATTGACAGAGCCAGAGAGATGTTTAAGCCTGTCTCTGACTGGGGCATTCTGTCTCCAGTGGCTGTCTTCACCATTGTGATTATGACCTACGCCGGTAATCACAAGGCCAAGAGTGCTCTCAAGGTCTACCAGCAAATGATAGCCACTGGTATCAACCCAGCCTGCTACACTTACGTTCAACTCATCTGTGTACTTGCAACAGACTTTTCCAATGTAAAGTTCCTTAGGTATGCCAAGAAGTATTTTCTTGAAATGTTGGATAAGGGGATGAAGCCCAATCCTACACCCTTCTGGAACATTATGGAGGGCATTGCCTACCGAGAGCCAGTGGAGAAGGCCAAGGAGTTCCTTGAGCAGATAAAAGCCAAGGGGTTCATGCCTCCCGACAGTGGTTTTCACTACAAAGAAGCCTACCTTGCCGAAGGAATGCAAACACTGAAGATGTATGCTAATCTTGTCCACAATGACACCATTGATGAGGATGTTAGAAAATACTTCTTCATGTTGCGCGCGCCTGCCCTGGCTACGCTGAAAGACTGGGGAGCAAGATGTACAGTGCTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

255

Amino Acids

29.09

Weight (kDa)

6.9

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 87 - 133 7.6e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AccI GTMKAC 1 cut(s) 327
AccII CGCG 2 cut(s) 711, 713
AciI CCGC 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 659
AfaI GTAC 3 cut(s) 107, 393, 754
AfiI CCNNNNNNNGG 2 cut(s) 135, 590
AgsI TTSAA 4 cut(s) 112, 178, 380, 452
AjnI CCWGG 1 cut(s) 720
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
AleI CACNNNNGTG 1 cut(s) 275
AluBI AGCT 2 cut(s) 20, 141
AluI AGCT 2 cut(s) 20, 141
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 2 cut(s) 238, 258
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 2 cut(s) 306, 537
Asp700I GAANNNNTTC 1 cut(s) 71
AspLEI GCGC 3 cut(s) 711, 713, 715
AsuHPI GGTGA 1 cut(s) 262
AxyI CCTNAGG 1 cut(s) 425
BanI GGYRCC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 319
BciT130I CCWGG 1 cut(s) 722
BcoDI GTCTC 2 cut(s) 238, 258
BfaI CTAG 1 cut(s) 21
BmcAI AGTACT 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 722
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 722
BmrI ACTGGG 2 cut(s) 250, 748
BmsI GCATC 1 cut(s) 207
BmuI ACTGGG 2 cut(s) 250, 748
BpiI GAAGAC 1 cut(s) 259
BpmI CTGGAG 1 cut(s) 240
BpuEI CTTGAG 3 cut(s) 35, 305, 572
BsaJI CCNNGG 3 cut(s) 540, 567, 720
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 590
Bse118I RCCGGY 2 cut(s) 194, 293
Bse1I ACTGG 5 cut(s) 245, 257, 352, 527, 743
Bse21I CCTNAGG 1 cut(s) 425
Bse3DI GCAATG 1 cut(s) 510
BseBI CCWGG 1 cut(s) 722
BseDI CCNNGG 3 cut(s) 540, 567, 720
BseGI GGATG 2 cut(s) 474, 688
BseLI CCNNNNNNNGG 2 cut(s) 135, 590
BseMI GCAATG 1 cut(s) 510
BseNI ACTGG 5 cut(s) 245, 257, 352, 527, 743
BsePI GCGCGC 2 cut(s) 709, 711
BseRI GAGGAG 1 cut(s) 151
BseYI CCCAGC 1 cut(s) 358
Bsh1236I CGCG 2 cut(s) 711, 713
BshFI GGCC 2 cut(s) 308, 539
BshNI GGYRCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 319
BsiSI CCGG 2 cut(s) 195, 294
BslI CCNNNNNNNGG 2 cut(s) 135, 590
BsmAI GTCTC 2 cut(s) 238, 258
BsmI GAATGC 2 cut(s) 246, 633
BsnI GGCC 2 cut(s) 308, 539
Bsp1286I GDGCHC 1 cut(s) 319
Bsp1407I TGTACA 1 cut(s) 752
Bsp143I GATC 1 cut(s) 5
BspACI CCGC 1 cut(s) 14
BspANI GGCC 2 cut(s) 308, 539
BspFNI CGCG 2 cut(s) 711, 713
BspLI GGNNCC 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 510
BsrFI RCCGGY 2 cut(s) 194, 293
BsrGI TGTACA 1 cut(s) 752
BsrI ACTGG 5 cut(s) 245, 257, 352, 527, 743
BssAI RCCGGY 2 cut(s) 194, 293
BssECI CCNNGG 3 cut(s) 540, 567, 720
BssHII GCGCGC 2 cut(s) 709, 711
BssMI GATC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 540, 567
Bst2UI CCWGG 1 cut(s) 722
Bst4CI ACNGT 3 cut(s) 95, 590, 757
BstAUI TGTACA 1 cut(s) 752
BstC8I GCNNGC 4 cut(s) 364, 711, 713, 717
BstDEI CTNAG 1 cut(s) 425
BstF5I GGATG 2 cut(s) 474, 688
BstFNI CGCG 2 cut(s) 711, 713
BstHHI GCGC 3 cut(s) 711, 713, 715
BstKTI GATC 1 cut(s) 8
BstMAI GTCTC 2 cut(s) 238, 258
BstMBI GATC 1 cut(s) 5
BstMWI GCNNNNNNNGC 2 cut(s) 314, 617
BstNI CCWGG 1 cut(s) 722
BstSCI CCNGG 1 cut(s) 720
BstUI CGCG 2 cut(s) 711, 713
BstV2I GAAGAC 1 cut(s) 259
Bsu36I CCTNAGG 1 cut(s) 425
BsuRI GGCC 2 cut(s) 308, 539
BtsCI GGATG 2 cut(s) 474, 688
BtsIMutI CAGTG 6 cut(s) 264, 345, 534, 595, 635, 762
Cac8I GCNNGC 4 cut(s) 364, 711, 713, 717
CaiI CAGNNNCTG 1 cut(s) 263
CfoI GCGC 3 cut(s) 711, 713, 715
Cfr10I RCCGGY 2 cut(s) 194, 293
Csp6I GTAC 3 cut(s) 106, 392, 753
CviAII CATG 3 cut(s) 59, 577, 703
CviQI GTAC 3 cut(s) 106, 392, 753
DdeI CTNAG 1 cut(s) 425
DpnI GATC 1 cut(s) 7
DpnII GATC 1 cut(s) 5
EciI GGCGGA 1 cut(s) 29
Eco130I CCWWGG 2 cut(s) 540, 567
Eco57I CTGAAG 1 cut(s) 659
Eco81I CCTNAGG 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 720
EcoT14I CCWWGG 2 cut(s) 540, 567
ErhI CCWWGG 2 cut(s) 540, 567
FaeI CATG 3 cut(s) 62, 580, 706
FaiI YATR 8 cut(s) 60, 185, 284, 432, 503, 578, 648, 704
FalI AAGNNNNNCTT 2 cut(s) 600, 632
FatI CATG 3 cut(s) 58, 576, 702
FblI GTMKAC 1 cut(s) 327
FokI GGATG 2 cut(s) 481, 695
FspBI CTAG 1 cut(s) 21
GlaI GCGC 3 cut(s) 710, 712, 714
GsaI CCCAGC 1 cut(s) 362
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 2 cut(s) 308, 539
HapII CCGG 2 cut(s) 195, 294
HhaI GCGC 3 cut(s) 711, 713, 715
Hin1II CATG 3 cut(s) 62, 580, 706
Hin6I GCGC 3 cut(s) 709, 711, 713
HinP1I GCGC 3 cut(s) 709, 711, 713
HinfI GANTC 1 cut(s) 146
HpaII CCGG 2 cut(s) 195, 294
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 3 cut(s) 328, 392, 661
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 4 cut(s) 52, 449, 493, 584
Hpy8I GTNNAC 3 cut(s) 328, 392, 661
HpyAV CCTTC 3 cut(s) 499, 529, 617
HpyCH4III ACNGT 3 cut(s) 95, 590, 757
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 2 cut(s) 398, 631
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 617
HpyF3I CTNAG 1 cut(s) 425
HpySE526I ACGT 1 cut(s) 375
Hsp92II CATG 3 cut(s) 62, 580, 706
HspAI GCGC 3 cut(s) 709, 711, 713
Kzo9I GATC 1 cut(s) 5
LmnI GCTCC 2 cut(s) 138, 743
LweI GCATC 1 cut(s) 207
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 375
MalI GATC 1 cut(s) 7
MboI GATC 1 cut(s) 5
MboII GAAGA 5 cut(s) 27, 79, 259, 652, 691
MhlI GDGCHC 1 cut(s) 319
MluCI AATT 2 cut(s) 31, 178
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 7 cut(s) 59, 70, 91, 129, 499, 591, 673
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 3 cut(s) 153, 168, 225
MslI CAYNNNNRTG 1 cut(s) 275
MspI CCGG 2 cut(s) 195, 294
MspR9I CCNGG 1 cut(s) 722
Mva1269I GAATGC 2 cut(s) 246, 633
MvaI CCWGG 1 cut(s) 722
MvnI CGCG 2 cut(s) 711, 713
MwoI GCNNNNNNNGC 2 cut(s) 314, 617
NdeII GATC 1 cut(s) 5
NlaIII CATG 3 cut(s) 62, 580, 706
NlaIV GGNNCC 1 cut(s) 127
OliI CACNNNNGTG 1 cut(s) 275
PauI GCGCGC 2 cut(s) 709, 711
PctI GAATGC 2 cut(s) 246, 633
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 720
PspFI CCCAGC 1 cut(s) 358
PspGI CCWGG 1 cut(s) 720
PspN4I GGNNCC 1 cut(s) 127
PstNI CAGNNNCTG 1 cut(s) 263
PteI GCGCGC 2 cut(s) 709, 711
RsaI GTAC 3 cut(s) 107, 393, 754
RsaNI GTAC 3 cut(s) 106, 392, 753
RseI CAYNNNNRTG 1 cut(s) 275
SaqAI TTAA 3 cut(s) 153, 168, 225
Sau3AI GATC 1 cut(s) 5
ScaI AGTACT 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 722
SduI GDGCHC 1 cut(s) 319
SetI ASST 8 cut(s) 22, 51, 143, 290, 327, 378, 431, 618
SfaNI GCATC 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 3 cut(s) 50, 320, 551
SmoI CTYRAG 3 cut(s) 50, 320, 551
Sse9I AATT 2 cut(s) 31, 178
SsiI CCGC 1 cut(s) 14
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 720
StyI CCWWGG 2 cut(s) 540, 567
TaaI ACNGT 3 cut(s) 95, 590, 757
TaiI ACGT 1 cut(s) 378
TaqI TCGA 2 cut(s) 75, 164
TasI AATT 2 cut(s) 31, 178
TatI WGTACW 3 cut(s) 105, 391, 752
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 3 cut(s) 153, 168, 225
Tru9I TTAA 3 cut(s) 153, 168, 225
TscAI CASTG 6 cut(s) 264, 352, 534, 595, 642, 762
TspDTI ATGAA 4 cut(s) 80, 485, 565, 691
TspRI CASTG 6 cut(s) 264, 352, 534, 595, 642, 762
XmiI GTMKAC 1 cut(s) 327
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 1 cut(s) 21
ZrmI AGTACT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.