endonuclease activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 1 - 53 | 4.1e-06 | Pentatricopeptide repeat domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 235 |
| AcsI | RAATTY | 1 cut(s) | 15 |
| AcuI | CTGAAG | 3 cut(s) | 22, 312, 361 |
| AfaI | GTAC | 1 cut(s) | 452 |
| AgsI | TTSAA | 3 cut(s) | 250, 310, 430 |
| AluBI | AGCT | 1 cut(s) | 112 |
| AluI | AGCT | 1 cut(s) | 112 |
| AoxI | GGCC | 2 cut(s) | 235, 434 |
| ApeKI | GCWGC | 1 cut(s) | 112 |
| ApoI | RAATTY | 1 cut(s) | 15 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 135, 374 |
| AspS9I | GGNCC | 1 cut(s) | 60 |
| AsuHPI | GGTGA | 1 cut(s) | 140 |
| AvaII | GGWCC | 1 cut(s) | 60 |
| BalI | TGGCCA | 1 cut(s) | 237 |
| BanII | GRGCYC | 1 cut(s) | 88 |
| BbsI | GAAGAC | 2 cut(s) | 303, 404 |
| BbvI | GCAGC | 1 cut(s) | 99 |
| BccI | CCATC | 1 cut(s) | 343 |
| BfaI | CTAG | 2 cut(s) | 50, 438 |
| BisI | GCNGC | 1 cut(s) | 113 |
| BlsI | GCNGC | 1 cut(s) | 114 |
| Bme18I | GGWCC | 1 cut(s) | 60 |
| BmgT120I | GGNCC | 1 cut(s) | 60 |
| BpiI | GAAGAC | 2 cut(s) | 303, 404 |
| BpmI | CTGGAG | 1 cut(s) | 165 |
| Bpu10I | CCTNAGC | 1 cut(s) | 342 |
| BpuEI | CTTGAG | 1 cut(s) | 413 |
| BsaBI | GATNNNNATC | 1 cut(s) | 353 |
| Bse1I | ACTGG | 1 cut(s) | 437 |
| Bse3DI | GCAATG | 1 cut(s) | 225 |
| Bse8I | GATNNNNATC | 1 cut(s) | 353 |
| BseGI | GGATG | 3 cut(s) | 177, 189, 220 |
| BseJI | GATNNNNATC | 1 cut(s) | 353 |
| BseMI | GCAATG | 1 cut(s) | 225 |
| BseMII | CTCAG | 2 cut(s) | 267, 356 |
| BseNI | ACTGG | 1 cut(s) | 437 |
| BseXI | GCAGC | 1 cut(s) | 99 |
| BsgI | GTGCAG | 1 cut(s) | 98 |
| BshFI | GGCC | 2 cut(s) | 237, 436 |
| BslFI | GGGAC | 2 cut(s) | 6, 257 |
| BsmFI | GGGAC | 2 cut(s) | 6, 257 |
| BsnI | GGCC | 2 cut(s) | 237, 436 |
| Bsp1286I | GDGCHC | 1 cut(s) | 88 |
| Bsp143I | GATC | 1 cut(s) | 315 |
| BspANI | GGCC | 2 cut(s) | 237, 436 |
| BspCNI | CTCAG | 2 cut(s) | 268, 355 |
| BspHI | TCATGA | 1 cut(s) | 364 |
| BsrDI | GCAATG | 1 cut(s) | 225 |
| BsrI | ACTGG | 1 cut(s) | 437 |
| BssMI | GATC | 1 cut(s) | 315 |
| Bst4CI | ACNGT | 3 cut(s) | 29, 64, 445 |
| Bst6I | CTCTTC | 1 cut(s) | 413 |
| BstC8I | GCNNGC | 1 cut(s) | 70 |
| BstDEI | CTNAG | 2 cut(s) | 276, 342 |
| BstF5I | GGATG | 3 cut(s) | 177, 189, 220 |
| BstKTI | GATC | 1 cut(s) | 318 |
| BstMBI | GATC | 1 cut(s) | 315 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 251 |
| BstV1I | GCAGC | 1 cut(s) | 99 |
| BstV2I | GAAGAC | 2 cut(s) | 303, 404 |
| BsuRI | GGCC | 2 cut(s) | 237, 436 |
| BtsCI | GGATG | 3 cut(s) | 177, 189, 220 |
| Cac8I | GCNNGC | 1 cut(s) | 70 |
| CciI | TCATGA | 1 cut(s) | 364 |
| Cfr13I | GGNCC | 1 cut(s) | 60 |
| Csp6I | GTAC | 1 cut(s) | 451 |
| CviAII | CATG | 5 cut(s) | 57, 106, 196, 233, 365 |
| CviJI | RGCY | 7 cut(s) | 86, 112, 237, 264, 375, 426, 436 |
| CviKI_1 | RGCY | 7 cut(s) | 86, 112, 237, 264, 375, 426, 436 |
| CviQI | GTAC | 1 cut(s) | 451 |
| DdeI | CTNAG | 2 cut(s) | 276, 342 |
| DpnI | GATC | 1 cut(s) | 317 |
| DpnII | GATC | 1 cut(s) | 315 |
| EaeI | YGGCCR | 1 cut(s) | 235 |
| Eam1104I | CTCTTC | 1 cut(s) | 413 |
| EarI | CTCTTC | 1 cut(s) | 413 |
| Eco24I | GRGCYC | 1 cut(s) | 88 |
| Eco47I | GGWCC | 1 cut(s) | 60 |
| Eco57I | CTGAAG | 3 cut(s) | 22, 312, 361 |
| EcoRI | GAATTC | 1 cut(s) | 15 |
| EcoT38I | GRGCYC | 1 cut(s) | 88 |
| FaeI | CATG | 5 cut(s) | 60, 109, 199, 236, 368 |
| FaiI | YATR | 9 cut(s) | 58, 107, 197, 205, 234, 243, 302, 366, 384 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 410, 442 |
| FaqI | GGGAC | 2 cut(s) | 6, 257 |
| FatI | CATG | 5 cut(s) | 56, 105, 195, 232, 364 |
| Fnu4HI | GCNGC | 1 cut(s) | 113 |
| FokI | GGATG | 3 cut(s) | 176, 184, 207 |
| FriOI | GRGCYC | 1 cut(s) | 88 |
| Fsp4HI | GCNGC | 1 cut(s) | 113 |
| FspBI | CTAG | 2 cut(s) | 50, 438 |
| GluI | GCNGC | 1 cut(s) | 113 |
| GsuI | CTGGAG | 1 cut(s) | 165 |
| HaeIII | GGCC | 2 cut(s) | 237, 436 |
| Hin1II | CATG | 5 cut(s) | 60, 109, 199, 236, 368 |
| HincII | GTYRAC | 2 cut(s) | 7, 157 |
| HindII | GTYRAC | 2 cut(s) | 7, 157 |
| HinfI | GANTC | 4 cut(s) | 131, 158, 178, 400 |
| HphI | GGTGA | 1 cut(s) | 140 |
| Hpy166II | GTNNAC | 2 cut(s) | 7, 157 |
| Hpy188I | TCNGA | 2 cut(s) | 292, 380 |
| Hpy188III | TCNNGA | 4 cut(s) | 182, 344, 365, 392 |
| Hpy8I | GTNNAC | 2 cut(s) | 7, 157 |
| HpyAV | CCTTC | 3 cut(s) | 46, 256, 297 |
| HpyCH4III | ACNGT | 3 cut(s) | 29, 64, 445 |
| HpyCH4V | TGCA | 5 cut(s) | 72, 115, 167, 230, 254 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 251 |
| HpyF3I | CTNAG | 2 cut(s) | 276, 342 |
| Hsp92II | CATG | 5 cut(s) | 60, 109, 199, 236, 368 |
| Kzo9I | GATC | 1 cut(s) | 315 |
| LpnPI | CCDG | 5 cut(s) | 25, 195, 288, 329, 418 |
| Lsp1109I | GCAGC | 1 cut(s) | 99 |
| MaeI | CTAG | 2 cut(s) | 50, 438 |
| MaeIII | GTNAC | 1 cut(s) | 29 |
| MalI | GATC | 1 cut(s) | 317 |
| MboI | GATC | 1 cut(s) | 315 |
| MboII | GAAGA | 4 cut(s) | 305, 308, 409, 430 |
| MhlI | GDGCHC | 1 cut(s) | 88 |
| MlsI | TGGCCA | 1 cut(s) | 237 |
| MluCI | AATT | 3 cut(s) | 15, 255, 305 |
| MluNI | TGGCCA | 1 cut(s) | 237 |
| MlyI | GAGTC | 3 cut(s) | 152, 172, 394 |
| MnlI | CCTC | 5 cut(s) | 75, 118, 168, 402, 441 |
| Mox20I | TGGCCA | 1 cut(s) | 237 |
| MroXI | GAANNNNTTC | 2 cut(s) | 135, 374 |
| MscI | TGGCCA | 1 cut(s) | 237 |
| MseI | TTAA | 1 cut(s) | 413 |
| MslI | CAYNNNNRTG | 1 cut(s) | 194 |
| Msp20I | TGGCCA | 1 cut(s) | 237 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 251 |
| NdeII | GATC | 1 cut(s) | 315 |
| NlaIII | CATG | 5 cut(s) | 60, 109, 199, 236, 368 |
| NmuCI | GTSAC | 1 cut(s) | 29 |
| PagI | TCATGA | 1 cut(s) | 364 |
| PdmI | GAANNNNTTC | 2 cut(s) | 135, 374 |
| PfeI | GAWTC | 1 cut(s) | 131 |
| PkrI | GCNGC | 1 cut(s) | 114 |
| PleI | GAGTC | 3 cut(s) | 152, 172, 394 |
| PpsI | GAGTC | 3 cut(s) | 152, 172, 394 |
| PspPI | GGNCC | 1 cut(s) | 60 |
| RsaI | GTAC | 1 cut(s) | 452 |
| RsaNI | GTAC | 1 cut(s) | 451 |
| RseI | CAYNNNNRTG | 1 cut(s) | 194 |
| SaqAI | TTAA | 1 cut(s) | 413 |
| SatI | GCNGC | 1 cut(s) | 113 |
| Sau3AI | GATC | 1 cut(s) | 315 |
| Sau96I | GGNCC | 1 cut(s) | 60 |
| SchI | GAGTC | 3 cut(s) | 152, 172, 394 |
| SduI | GDGCHC | 1 cut(s) | 88 |
| SetI | ASST | 6 cut(s) | 38, 44, 114, 289, 413, 452 |
| SinI | GGWCC | 1 cut(s) | 60 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 194 |
| SmlI | CTYRAG | 1 cut(s) | 392 |
| SmoI | CTYRAG | 1 cut(s) | 392 |
| Sse9I | AATT | 3 cut(s) | 15, 255, 305 |
| SspMI | CTAG | 2 cut(s) | 50, 438 |
| TaaI | ACNGT | 3 cut(s) | 29, 64, 445 |
| TasI | AATT | 3 cut(s) | 15, 255, 305 |
| TfiI | GAWTC | 1 cut(s) | 131 |
| Tru1I | TTAA | 1 cut(s) | 413 |
| Tru9I | TTAA | 1 cut(s) | 413 |
| TseFI | GTSAC | 1 cut(s) | 29 |
| TseI | GCWGC | 1 cut(s) | 112 |
| Tsp45I | GTSAC | 1 cut(s) | 29 |
| TspDTI | ATGAA | 5 cut(s) | 89, 122, 296, 353, 399 |
| TspGWI | ACGGA | 2 cut(s) | 27, 132 |
| VpaK11BI | GGWCC | 1 cut(s) | 60 |
| XapI | RAATTY | 1 cut(s) | 15 |
| XmnI | GAANNNNTTC | 2 cut(s) | 135, 374 |
| XspI | CTAG | 2 cut(s) | 50, 438 |