FvH4_5g35253

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000101
Physical Location & Seq
Reverse (-)
25825425 .. 25826026
602 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g35253.t1

Sequence Viewer

Length: 534 bp
ATGAAGGGAATGAAGATCTATGATGATCTCATGTCCAGAACTTTGATTAAGAATGTCAATATAGATGAAGCCATGGAGATTTGTAAGCGCACTGTTGAGATGGGTATGCAACCCATGGTTGTAATCCACACCTGCGTAATTGAAGCCTATCTCAAGTTTGGCAAGACTAAGTGTGCTTTGGAGGCCTACTGGGGAATGTTAGCTGCTGGGGTTGCCCCTAATTCCTACACTTACACTGTTTTAGTCAAGGGACTCACTGCTGATCCCAACTTCTTTGGAGAAGCCAAGAAGTGCTTGCTTGAGATGATGGAAAAGGGGTTGAGGCCCAATGCTGCTACCTACACTGCTGTGATAGAGAGTTTTGCAAAGCAGGGTGACAACGCATCTGAGGAGGAGTGCAAGGAGTTGGTGGACGTGATGATAAGCAAGGGGTTTGTGCCAAATGCAAAGGCTATGATGGAGGTTCTAATGGGAAGACCAAAACCTGTAATAAGAGAGATCATGAACATTGTCCTGTCCAAGTTGAAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

178

Amino Acids

19.67

Weight (kDa)

8.2

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 39 - 85 1.4e-09 PPR repeat family
TPR_24 PF23276 40 - 127 1.8e-07 Fungal tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 140
Acc36I ACCTGC 1 cut(s) 140
AclWI GGATC 1 cut(s) 257
AgsI TTSAA 2 cut(s) 143, 526
AjiI CACGTC 1 cut(s) 415
AleI CACNNNNGTG 1 cut(s) 347
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
AlwI GGATC 1 cut(s) 257
AoxI GGCC 2 cut(s) 183, 323
ApeKI GCWGC 2 cut(s) 203, 332
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 386
BbsI GAAGAC 1 cut(s) 481
BbvI GCAGC 2 cut(s) 190, 319
BccI CCATC 3 cut(s) 94, 301, 451
BfuAI ACCTGC 1 cut(s) 140
BglII AGATCT 1 cut(s) 15
BisI GCNGC 2 cut(s) 204, 333
BlsI GCNGC 2 cut(s) 205, 334
BmgBI CACGTC 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 324
BmrI ACTGGG 1 cut(s) 199
BmsI GCATC 1 cut(s) 392
BmuI ACTGGG 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 481
BpuEI CTTGAG 2 cut(s) 137, 320
BsaJI CCNNGG 2 cut(s) 72, 114
Bse1I ACTGG 1 cut(s) 194
BseDI CCNNGG 2 cut(s) 72, 114
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 2 cut(s) 404, 407
BseXI GCAGC 2 cut(s) 190, 319
BseYI CCCAGC 1 cut(s) 206
BshFI GGCC 2 cut(s) 185, 325
BslFI GGGAC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 264
BsnI GGCC 2 cut(s) 185, 325
Bsp143I GATC 4 cut(s) 15, 25, 262, 498
Bsp19I CCATGG 2 cut(s) 72, 114
BspANI GGCC 2 cut(s) 185, 325
BspCNI CTCAG 1 cut(s) 379
BspHI TCATGA 1 cut(s) 501
BspMI ACCTGC 1 cut(s) 140
BspPI GGATC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 2 cut(s) 72, 114
BssMI GATC 4 cut(s) 15, 25, 262, 498
BssT1I CCWWGG 2 cut(s) 72, 114
Bst4CI ACNGT 2 cut(s) 94, 238
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 2 cut(s) 168, 387
BstDSI CCRYGG 2 cut(s) 72, 114
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 4 cut(s) 18, 28, 265, 501
BstMBI GATC 4 cut(s) 15, 25, 262, 498
BstMWI GCNNNNNNNGC 2 cut(s) 182, 212
BstV1I GCAGC 2 cut(s) 190, 319
BstV2I GAAGAC 1 cut(s) 481
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BsuRI GGCC 2 cut(s) 185, 325
BtgI CCRYGG 2 cut(s) 72, 114
BtrI CACGTC 1 cut(s) 415
BtsI GCAGTG 2 cut(s) 255, 342
BtsIMutI CAGTG 4 cut(s) 90, 234, 255, 342
BveI ACCTGC 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 296
CciI TCATGA 1 cut(s) 501
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 324
CviAII CATG 4 cut(s) 31, 73, 115, 502
CviJI RGCY 7 cut(s) 71, 146, 185, 203, 284, 325, 452
CviKI_1 RGCY 7 cut(s) 71, 146, 185, 203, 284, 325, 452
DdeI CTNAG 2 cut(s) 168, 387
DpnI GATC 4 cut(s) 17, 27, 264, 500
DpnII GATC 4 cut(s) 15, 25, 262, 498
Eco130I CCWWGG 2 cut(s) 72, 114
Eco147I AGGCCT 1 cut(s) 185
EcoT14I CCWWGG 2 cut(s) 72, 114
ErhI CCWWGG 2 cut(s) 72, 114
FaeI CATG 4 cut(s) 34, 76, 118, 505
FaiI YATR 8 cut(s) 21, 32, 62, 74, 107, 116, 455, 503
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FaqI GGGAC 1 cut(s) 264
FatI CATG 4 cut(s) 30, 72, 114, 501
Fnu4HI GCNGC 2 cut(s) 204, 333
Fsp4HI GCNGC 2 cut(s) 204, 333
GlaI GCGC 1 cut(s) 89
GluI GCNGC 2 cut(s) 204, 333
GsaI CCCAGC 1 cut(s) 210
HaeIII GGCC 2 cut(s) 185, 325
HhaI GCGC 1 cut(s) 90
Hin1II CATG 4 cut(s) 34, 76, 118, 505
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HinfI GANTC 1 cut(s) 252
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 2 cut(s) 36, 502
Hpy8I GTNNAC 1 cut(s) 412
HpyAV CCTTC 1 cut(s) 520
HpyCH4III ACNGT 2 cut(s) 94, 238
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 4 cut(s) 109, 365, 399, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 212
HpyF3I CTNAG 2 cut(s) 168, 387
HpySE526I ACGT 1 cut(s) 414
Hsp92II CATG 4 cut(s) 34, 76, 118, 505
HspAI GCGC 1 cut(s) 88
Kzo9I GATC 4 cut(s) 15, 25, 262, 498
LpnPI CCDG 7 cut(s) 49, 145, 175, 192, 356, 498, 527
Lsp1109I GCAGC 2 cut(s) 190, 319
LweI GCATC 1 cut(s) 392
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 1 cut(s) 374
MalI GATC 4 cut(s) 17, 27, 264, 500
MboI GATC 4 cut(s) 15, 25, 262, 498
MboII GAAGA 2 cut(s) 25, 486
MflI RGATCY 1 cut(s) 15
MluCI AATT 2 cut(s) 138, 220
MlyI GAGTC 1 cut(s) 246
MnlI CCTC 5 cut(s) 175, 315, 382, 385, 454
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 347
MwoI GCNNNNNNNGC 2 cut(s) 182, 212
NcoI CCATGG 2 cut(s) 72, 114
NdeII GATC 4 cut(s) 15, 25, 262, 498
NlaIII CATG 4 cut(s) 34, 76, 118, 505
NmuCI GTSAC 1 cut(s) 374
OliI CACNNNNGTG 1 cut(s) 347
PagI TCATGA 1 cut(s) 501
PaqCI CACCTGC 1 cut(s) 140
PceI AGGCCT 1 cut(s) 185
PkrI GCNGC 2 cut(s) 205, 334
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 324
PsuI RGATCY 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 347
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 2 cut(s) 204, 333
Sau3AI GATC 4 cut(s) 15, 25, 262, 498
Sau96I GGNCC 1 cut(s) 324
SchI GAGTC 1 cut(s) 246
SetI ASST 6 cut(s) 134, 205, 341, 417, 465, 487
SfaNI GCATC 1 cut(s) 392
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 2 cut(s) 152, 299
SmoI CTYRAG 2 cut(s) 152, 299
Sse9I AATT 2 cut(s) 138, 220
SseBI AGGCCT 1 cut(s) 185
StuI AGGCCT 1 cut(s) 185
StyI CCWWGG 2 cut(s) 72, 114
TaaI ACNGT 2 cut(s) 94, 238
TaiI ACGT 1 cut(s) 417
TasI AATT 2 cut(s) 138, 220
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 4 cut(s) 97, 241, 262, 349
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 2 cut(s) 203, 332
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 4 cut(s) 17, 26, 81, 518
TspRI CASTG 4 cut(s) 97, 241, 262, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.