Rorug07G0295100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000101
Physical Location & Seq
Forward (+)
28910674 .. 28914018
3345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0295100.1

Sequence Viewer

Length: 588 bp
ATGTCATCTCTACGACGCTTCTCAAGCCATGCTCGTGTTTCTCAAACCATTACTACTACCTTAGGGTCCAAAGCTGTAATACACTCACCTACCAGAACTGTGGCTCAACAAATATCAGGGTCCCAATCCAGACCTGCCACGTGCAGTCTTTCTCGCACCCTCTACACAGCCACTGCAGCAAGTGAGCCTCGGTCCAAGAATCTTGAGCGCATTGCTGACAACCTCTTGGACCTCACAAAGATTGAGAGGCATGACTACTCCATCCTCTTCAGGCTAAAAATGGGCCTCAACCGATATGGTCCAGCAGTCTCAGGGATAGGCCCAACATCTTCCGAATCTGGGTCTGCCTCCACAGACTCCAAGGTGGTGGAGAAGACCGCATTTGATATAAAGCTTGAGAAGTTTGACGCAGCGGCAAAGATCAAGATCATAAAGGAGGTTAGGAGTTTCACTGATTTGGGACTAAAGGACGCTAAGGACTTGGTGGAAAAGGCTCCAGTTTTGCTGAAGAAGGGTGTCACCAAAGAGGAGGCAGGCCCCATTGTTGACAAGCTCAAGGAGTTGGGTGCTACTGTGGTACTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

195

Amino Acids

21.1

Weight (kDa)

9.68

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L12 PF00542 128 - 194 5.1e-22 Ribosomal protein L7/L12 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 142
AciI CCGC 2 cut(s) 378, 413
AcuI CTGAAG 2 cut(s) 253, 527
AcvI CACGTG 1 cut(s) 141
AfaI GTAC 1 cut(s) 579
AfiI CCNNNNNNNGG 1 cut(s) 339
AluBI AGCT 3 cut(s) 74, 394, 553
AluI AGCT 3 cut(s) 74, 394, 553
Alw26I GTCTC 1 cut(s) 313
AlwNI CAGNNNCTG 1 cut(s) 173
AoxI GGCC 3 cut(s) 283, 319, 535
ApeKI GCWGC 2 cut(s) 176, 410
AspLEI GCGC 1 cut(s) 210
AspS9I GGNCC 8 cut(s) 66, 120, 192, 229, 283, 299, 320, 536
AsuHPI GGTGA 2 cut(s) 78, 511
AvaII GGWCC 5 cut(s) 66, 120, 192, 229, 299
AxyI CCTNAGG 1 cut(s) 61
BauI CACGAG 1 cut(s) 33
BbrPI CACGTG 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 380
BbvI GCAGC 2 cut(s) 188, 422
BccI CCATC 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 313
BfmI CTRYAG 1 cut(s) 174
BfuAI ACCTGC 1 cut(s) 142
BisI GCNGC 3 cut(s) 177, 411, 414
BlsI GCNGC 3 cut(s) 178, 412, 415
Bme18I GGWCC 5 cut(s) 66, 120, 192, 229, 299
BmgT120I GGNCC 8 cut(s) 66, 120, 192, 229, 283, 299, 320, 536
BmiI GGNNCC 5 cut(s) 67, 121, 122, 495, 538
BpiI GAAGAC 1 cut(s) 380
BpmI CTGGAG 1 cut(s) 480
Bpu10I CCTNAGC 1 cut(s) 474
BpuEI CTTGAG 4 cut(s) 7, 224, 416, 539
BsaAI YACGTR 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 425
BsaJI CCNNGG 2 cut(s) 188, 360
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse1I ACTGG 2 cut(s) 497, 585
Bse21I CCTNAGG 1 cut(s) 61
Bse3DI GCAATG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 425
BseDI CCNNGG 2 cut(s) 188, 360
BseGI GGATG 1 cut(s) 261
BseJI GATNNNNATC 1 cut(s) 425
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 2 cut(s) 497, 585
BseRI GAGGAG 1 cut(s) 542
BseXI GCAGC 2 cut(s) 188, 422
BsgI GTGCAG 1 cut(s) 163
BshFI GGCC 3 cut(s) 285, 321, 537
BslFI GGGAC 2 cut(s) 106, 474
BslI CCNNNNNNNGG 1 cut(s) 339
BsmAI GTCTC 1 cut(s) 313
BsmFI GGGAC 2 cut(s) 106, 474
BsnI GGCC 3 cut(s) 285, 321, 537
Bsp143I GATC 2 cut(s) 420, 426
BspACI CCGC 2 cut(s) 378, 413
BspANI GGCC 3 cut(s) 285, 321, 537
BspCNI CTCAG 1 cut(s) 323
BspLI GGNNCC 5 cut(s) 67, 121, 122, 495, 538
BspMAI CTGCAG 1 cut(s) 178
BspMI ACCTGC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 210
BsrI ACTGG 2 cut(s) 497, 585
BssECI CCNNGG 2 cut(s) 188, 360
BssMI GATC 2 cut(s) 420, 426
BssSI CACGAG 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 33
Bst4CI ACNGT 2 cut(s) 100, 574
Bst6I CTCTTC 1 cut(s) 272
BstBAI YACGTR 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 535
BstDEI CTNAG 3 cut(s) 61, 310, 474
BstF5I GGATG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 2 cut(s) 423, 429
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 2 cut(s) 420, 426
BstMWI GCNNNNNNNGC 2 cut(s) 24, 176
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 188, 422
BstV2I GAAGAC 1 cut(s) 380
BstXI CCANNNNNNTGG 2 cut(s) 100, 367
Bsu36I CCTNAGG 1 cut(s) 61
BsuRI GGCC 3 cut(s) 285, 321, 537
BtsCI GGATG 1 cut(s) 261
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 171, 450
BveI ACCTGC 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 535
CaiI CAGNNNCTG 1 cut(s) 173
CfoI GCGC 1 cut(s) 210
Cfr13I GGNCC 8 cut(s) 66, 120, 192, 229, 283, 299, 320, 536
CseI GACGC 3 cut(s) 24, 416, 479
Csp6I GTAC 1 cut(s) 578
CviAII CATG 2 cut(s) 29, 251
CviQI GTAC 1 cut(s) 578
DdeI CTNAG 3 cut(s) 61, 310, 474
DpnI GATC 2 cut(s) 422, 428
DpnII GATC 2 cut(s) 420, 426
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 360
Eco47I GGWCC 5 cut(s) 66, 120, 192, 229, 299
Eco57I CTGAAG 2 cut(s) 253, 527
Eco72I CACGTG 1 cut(s) 141
Eco81I CCTNAGG 1 cut(s) 61
EcoO109I RGGNCCY 2 cut(s) 120, 536
EcoT14I CCWWGG 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 2 cut(s) 32, 254
FaiI YATR 5 cut(s) 30, 252, 297, 389, 431
FaqI GGGAC 2 cut(s) 106, 474
FatI CATG 2 cut(s) 28, 250
Fnu4HI GCNGC 3 cut(s) 177, 411, 414
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 3 cut(s) 177, 411, 414
GlaI GCGC 1 cut(s) 209
GluI GCNGC 3 cut(s) 177, 411, 414
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 3 cut(s) 285, 321, 537
HgaI GACGC 3 cut(s) 24, 416, 479
HhaI GCGC 1 cut(s) 210
Hin1II CATG 2 cut(s) 32, 254
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 3 cut(s) 199, 335, 356
HphI GGTGA 2 cut(s) 78, 511
Hpy166II GTNNAC 1 cut(s) 547
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 3 cut(s) 129, 203, 424
Hpy8I GTNNAC 1 cut(s) 547
Hpy99I CGWCG 1 cut(s) 18
HpyAV CCTTC 1 cut(s) 505
HpyCH4III ACNGT 2 cut(s) 100, 574
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 2 cut(s) 144, 176
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 176
HpyF3I CTNAG 3 cut(s) 61, 310, 474
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 2 cut(s) 32, 254
HspAI GCGC 1 cut(s) 208
KflI GGGWCCC 1 cut(s) 120
Kzo9I GATC 2 cut(s) 420, 426
LmnI GCTCC 1 cut(s) 499
Lsp1109I GCAGC 2 cut(s) 188, 422
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 517
MalI GATC 2 cut(s) 422, 428
MboI GATC 2 cut(s) 420, 426
MboII GAAGA 4 cut(s) 259, 321, 385, 520
MlyI GAGTC 1 cut(s) 350
MslI CAYNNNNRTG 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 413
MwoI GCNNNNNNNGC 2 cut(s) 24, 176
NdeII GATC 2 cut(s) 420, 426
NlaIII CATG 2 cut(s) 32, 254
NlaIV GGNNCC 5 cut(s) 67, 121, 122, 495, 538
NmuCI GTSAC 1 cut(s) 517
PfeI GAWTC 2 cut(s) 199, 335
PkrI GCNGC 3 cut(s) 178, 412, 415
PleI GAGTC 1 cut(s) 350
PmaCI CACGTG 1 cut(s) 141
PmlI CACGTG 1 cut(s) 141
PpsI GAGTC 1 cut(s) 350
Ppu21I YACGTR 1 cut(s) 141
PpuMI RGGWCCY 1 cut(s) 120
Psp5II RGGWCCY 1 cut(s) 120
PspCI CACGTG 1 cut(s) 141
PspN4I GGNNCC 5 cut(s) 67, 121, 122, 495, 538
PspPI GGNCC 8 cut(s) 66, 120, 192, 229, 283, 299, 320, 536
PspPPI RGGWCCY 1 cut(s) 120
PstI CTGCAG 1 cut(s) 178
PstNI CAGNNNCTG 1 cut(s) 173
RsaI GTAC 1 cut(s) 579
RsaNI GTAC 1 cut(s) 578
RseI CAYNNNNRTG 1 cut(s) 33
SatI GCNGC 3 cut(s) 177, 411, 414
Sau3AI GATC 2 cut(s) 420, 426
Sau96I GGNCC 8 cut(s) 66, 120, 192, 229, 283, 299, 320, 536
SchI GAGTC 1 cut(s) 350
SfcI CTRYAG 1 cut(s) 174
SinI GGWCC 5 cut(s) 66, 120, 192, 229, 299
SmiMI CAYNNNNRTG 1 cut(s) 33
SmlI CTYRAG 4 cut(s) 22, 203, 395, 554
SmoI CTYRAG 4 cut(s) 22, 203, 395, 554
SsiI CCGC 2 cut(s) 378, 413
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 2 cut(s) 100, 574
TaiI ACGT 1 cut(s) 143
TaqII GACCGA 1 cut(s) 180
TauI GCSGC 1 cut(s) 416
TfiI GAWTC 2 cut(s) 199, 335
TscAI CASTG 2 cut(s) 178, 457
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 2 cut(s) 176, 410
Tsp45I GTSAC 1 cut(s) 517
TspRI CASTG 2 cut(s) 178, 457
VpaK11BI GGWCC 5 cut(s) 66, 120, 192, 229, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.