Rw0G020670

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00944
OG0000101
Physical Location & Seq
Reverse (-)
48442 .. 48951
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G020670.1

Sequence Viewer

Length: 510 bp
ATGGAGGTGCACAAGGCTTTGGTAGAGGATGGAAATGTGGACGAGGCCATCGAGCTCTATCATACCATTCAACAGGCAGGCGTAGAGCCATTGGTCCAAATCCACACCTCTGTTATTAAAGCCTACCTCAAGTTTGGCAAGACCAAGGGTGCTCTGGAGGCGTATCTGGCCATGTCAGCTGCTGGGGTTGCCCCCAACTCCTACACATACACTGTTTTAATCAAGGGACTCTGTGCTGACCCCAACTTCTTTGGAGATGCCAAGAAGTACTTGCTTGAGATGATGGACAAGGGGAAGCAGCCTAATGTTGCTGCCTATACTGCGGTGATAGAAGGCTTTGTGCTTTGGGAGGACAAGATAGCTGAGGAAAAGGGCAAAGAGTTTGTGGAGATGATGATGGGTAAAGGTTTTGTGCCTAATGCGAAGGCTATGATGAAGGTTTTAAAGGGCAAACCAACACCGGTAATTGGAAGGGTCATGAGCCTTGTACTTTCCAAGTTGAAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

169

Amino Acids

18.5

Weight (kDa)

8.49

Isoelectric Point (pI)

19.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 18 - 118 4.1e-09 Fungal tetratrico peptide repeats
PPR_2 PF13041 36 - 78 4.8e-12 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 323
AcoI YGGCCR 1 cut(s) 168
AfaI GTAC 2 cut(s) 269, 489
AfiI CCNNNNNNNGG 1 cut(s) 467
AgeI ACCGGT 1 cut(s) 460
AgsI TTSAA 2 cut(s) 71, 502
AluBI AGCT 4 cut(s) 55, 179, 362, 507
AluI AGCT 4 cut(s) 55, 179, 362, 507
Alw21I GWGCWC 3 cut(s) 12, 57, 154
Alw44I GTGCAC 1 cut(s) 8
AlwNI CAGNNNCTG 1 cut(s) 182
AoxI GGCC 2 cut(s) 45, 168
ApaLI GTGCAC 1 cut(s) 8
ApeKI GCWGC 3 cut(s) 179, 298, 311
AsiGI ACCGGT 1 cut(s) 460
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 337
AvaII GGWCC 1 cut(s) 94
BaeGI GKGCMC 1 cut(s) 12
BalI TGGCCA 1 cut(s) 170
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 3 cut(s) 12, 57, 154
BbvCI CCTCAGC 1 cut(s) 363
BbvI GCAGC 3 cut(s) 166, 298, 310
BccI CCATC 4 cut(s) 23, 56, 277, 391
BisI GCNGC 3 cut(s) 180, 299, 312
BlsI GCNGC 3 cut(s) 181, 300, 313
BmcAI AGTACT 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmsI GCATC 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 176
Bpu10I CCTNAGC 1 cut(s) 363
BpuEI CTTGAG 2 cut(s) 113, 296
BsaJI CCNNGG 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 460
Bsc4I CCNNNNNNNGG 1 cut(s) 467
Bse118I RCCGGY 1 cut(s) 460
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 467
BseMII CTCAG 1 cut(s) 354
BseSI GKGCMC 1 cut(s) 12
BseXI GCAGC 3 cut(s) 166, 298, 310
BseYI CCCAGC 1 cut(s) 182
BshFI GGCC 2 cut(s) 47, 170
BshTI ACCGGT 1 cut(s) 460
BsiHKAI GWGCWC 3 cut(s) 12, 57, 154
BsiSI CCGG 1 cut(s) 461
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 467
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 2 cut(s) 47, 170
Bsp1286I GDGCHC 3 cut(s) 12, 57, 154
BspACI CCGC 1 cut(s) 323
BspANI GGCC 2 cut(s) 47, 170
BspCNI CTCAG 1 cut(s) 355
BspHI TCATGA 1 cut(s) 477
BspQI GCTCTTC 1 cut(s) 497
BsrFI RCCGGY 1 cut(s) 460
BssAI RCCGGY 1 cut(s) 460
BssECI CCNNGG 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 497
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 34
BstMWI GCNNNNNNNGC 5 cut(s) 158, 167, 176, 188, 320
BstSLI GKGCMC 1 cut(s) 12
BstV1I GCAGC 3 cut(s) 166, 298, 310
BsuRI GGCC 2 cut(s) 47, 170
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 79
CaiI CAGNNNCTG 1 cut(s) 182
CciI TCATGA 1 cut(s) 477
Cfr10I RCCGGY 1 cut(s) 460
Cfr13I GGNCC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 268, 488
CspAI ACCGGT 1 cut(s) 460
CviAII CATG 2 cut(s) 172, 478
CviQI GTAC 2 cut(s) 268, 488
DdeI CTNAG 1 cut(s) 363
DraI TTTAAA 1 cut(s) 444
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 497
EarI CTCTTC 1 cut(s) 497
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 94
Eco53kI GAGCTC 1 cut(s) 55
EcoICRI GAGCTC 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 2 cut(s) 175, 481
FaiI YATR 6 cut(s) 63, 173, 208, 318, 431, 479
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 1 cut(s) 240
FatI CATG 2 cut(s) 171, 477
Fnu4HI GCNGC 3 cut(s) 180, 299, 312
FokI GGATG 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 3 cut(s) 180, 299, 312
GluI GCNGC 3 cut(s) 180, 299, 312
GsaI CCCAGC 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 2 cut(s) 47, 170
HapII CCGG 1 cut(s) 461
Hin1II CATG 2 cut(s) 175, 481
HinfI GANTC 1 cut(s) 228
HpaII CCGG 1 cut(s) 461
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 2 cut(s) 10, 40
Hpy188III TCNNGA 2 cut(s) 155, 478
Hpy8I GTNNAC 2 cut(s) 10, 40
HpyAV CCTTC 4 cut(s) 326, 418, 430, 465
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 1 cut(s) 10
HpyF10VI GCNNNNNNNGC 5 cut(s) 158, 167, 176, 188, 320
HpyF3I CTNAG 1 cut(s) 363
Hsp92II CATG 2 cut(s) 175, 481
LguI GCTCTTC 1 cut(s) 497
LpnPI CCDG 6 cut(s) 59, 63, 140, 152, 168, 474
Lsp1109I GCAGC 3 cut(s) 166, 298, 310
LweI GCATC 1 cut(s) 247
MhlI GDGCHC 3 cut(s) 12, 57, 154
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 1 cut(s) 465
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 1 cut(s) 222
MnlI CCTC 7 cut(s) 19, 37, 118, 137, 151, 343, 358
Mox20I TGGCCA 1 cut(s) 170
MscI TGGCCA 1 cut(s) 170
MseI TTAA 3 cut(s) 117, 218, 443
Msp20I TGGCCA 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 1 cut(s) 461
MwoI GCNNNNNNNGC 5 cut(s) 158, 167, 176, 188, 320
NlaIII CATG 2 cut(s) 175, 481
PagI TCATGA 1 cut(s) 477
PciSI GCTCTTC 1 cut(s) 497
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PinAI ACCGGT 1 cut(s) 460
PkrI GCNGC 3 cut(s) 181, 300, 313
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 94
PstNI CAGNNNCTG 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 2 cut(s) 269, 489
RsaNI GTAC 2 cut(s) 268, 488
SacI GAGCTC 1 cut(s) 57
SapI GCTCTTC 1 cut(s) 497
SaqAI TTAA 3 cut(s) 117, 218, 443
SatI GCNGC 3 cut(s) 180, 299, 312
Sau96I GGNCC 1 cut(s) 94
ScaI AGTACT 1 cut(s) 269
SchI GAGTC 1 cut(s) 222
SduI GDGCHC 3 cut(s) 12, 57, 154
SetI ASST 9 cut(s) 9, 57, 110, 129, 181, 364, 409, 441, 509
SfaNI GCATC 1 cut(s) 247
SinI GGWCC 1 cut(s) 94
SmlI CTYRAG 2 cut(s) 128, 275
SmoI CTYRAG 2 cut(s) 128, 275
Sse9I AATT 1 cut(s) 465
SsiI CCGC 1 cut(s) 323
SstI GAGCTC 1 cut(s) 57
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 51
TasI AATT 1 cut(s) 465
TatI WGTACW 2 cut(s) 267, 487
Tru1I TTAA 3 cut(s) 117, 218, 443
Tru9I TTAA 3 cut(s) 117, 218, 443
TscAI CASTG 1 cut(s) 217
TseI GCWGC 3 cut(s) 179, 298, 311
TspDTI ATGAA 1 cut(s) 449
TspRI CASTG 1 cut(s) 217
VneI GTGCAC 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 94
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
ZrmI AGTACT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.