Rorug07G0296100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000101
Physical Location & Seq
Reverse (-)
29107990 .. 29108325
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0296100.1

Sequence Viewer

Length: 336 bp
ATGTCTACGCCGACCCTACAAGTGAGGGACATGGTTGAACTCGATGAAACTGAACGAAAGATCTTCAAAATGTTGCCGGGAACGCTTGACCATTATAAACTGAAGACAGAGCTTCGTGTCGCAGGTGGATGGGTCCGTGATAAGCTTCTGGGAGCAGAATGCAATGACATTGACATTGCTTTGGAAAATATGATGGGAAGCGATTTTGTTAAAATGGTGGAAAAGTACATGAAGTTTATGGGGGAAGAGGTCCGAGGAAGTGCCATTATTCGAAGCAATCCCAACCAATGGAAACGGCCAGGCTGCGCATATTTGGGACATGGGTTGATTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

111

Amino Acids

12.68

Weight (kDa)

6.73

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PolyA_pol PF01743 38 - 92 2.5e-08 Poly A polymerase head domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
AarI CACCTGC 1 cut(s) 113
Acc16I TGCGCA 1 cut(s) 307
Acc36I ACCTGC 1 cut(s) 113
AccB7I CCANNNNNTGG 1 cut(s) 288
AccI GTMKAC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 296
AcuI CTGAAG 1 cut(s) 122
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 2 cut(s) 38, 67
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 2 cut(s) 112, 145
AluI AGCT 2 cut(s) 112, 145
AoxI GGCC 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 303
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 2 cut(s) 133, 250
AsuC2I CCSGG 1 cut(s) 78
AsuII TTCGAA 1 cut(s) 271
AvaII GGWCC 2 cut(s) 133, 250
BbsI GAAGAC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 290
BccI CCATC 2 cut(s) 123, 187
BceAI ACGGC 1 cut(s) 311
BciT130I CCWGG 1 cut(s) 300
BcnI CCSGG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 113
BglII AGATCT 1 cut(s) 60
BisI GCNGC 1 cut(s) 304
BlsI GCNGC 1 cut(s) 305
Bme1390I CCNGG 2 cut(s) 78, 300
Bme18I GGWCC 2 cut(s) 133, 250
BmgT120I GGNCC 2 cut(s) 133, 250
BmiI GGNNCC 1 cut(s) 134
BmrFI CCNGG 2 cut(s) 78, 300
BpiI GAAGAC 1 cut(s) 110
Bpu14I TTCGAA 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 253
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse3DI GCAATG 2 cut(s) 169, 174
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 134
BseLI CCNNNNNNNGG 1 cut(s) 288
BseMI GCAATG 2 cut(s) 169, 174
BseXI GCAGC 1 cut(s) 290
BshFI GGCC 1 cut(s) 298
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 2 cut(s) 41, 330
BslI CCNNNNNNNGG 1 cut(s) 288
BsmFI GGGAC 2 cut(s) 41, 330
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 1 cut(s) 298
Bsp119I TTCGAA 1 cut(s) 271
Bsp143I GATC 1 cut(s) 60
BspANI GGCC 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 134
BspMI ACCTGC 1 cut(s) 113
BspT104I TTCGAA 1 cut(s) 271
BsrDI GCAATG 2 cut(s) 169, 174
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 300
Bst6I CTCTTC 1 cut(s) 240
BstBI TTCGAA 1 cut(s) 271
BstF5I GGATG 1 cut(s) 134
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 2 cut(s) 76, 298
BstV1I GCAGC 1 cut(s) 290
BstV2I GAAGAC 1 cut(s) 110
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BsuRI GGCC 1 cut(s) 298
BtsCI GGATG 1 cut(s) 134
BveI ACCTGC 1 cut(s) 113
CfoI GCGC 1 cut(s) 308
Cfr13I GGNCC 2 cut(s) 133, 250
Csp6I GTAC 1 cut(s) 226
CviAII CATG 3 cut(s) 31, 229, 320
CviJI RGCY 4 cut(s) 112, 145, 298, 303
CviKI_1 RGCY 4 cut(s) 112, 145, 298, 303
CviQI GTAC 1 cut(s) 226
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
EaeI YGGCCR 1 cut(s) 296
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco47I GGWCC 2 cut(s) 133, 250
Eco57I CTGAAG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 298
FaeI CATG 3 cut(s) 34, 232, 323
FaiI YATR 7 cut(s) 32, 96, 191, 230, 239, 310, 321
FaqI GGGAC 2 cut(s) 41, 330
FatI CATG 3 cut(s) 30, 228, 319
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 304
FokI GGATG 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 304
FspI TGCGCA 1 cut(s) 307
GlaI GCGC 1 cut(s) 307
GluI GCNGC 1 cut(s) 304
HaeIII GGCC 1 cut(s) 298
HapII CCGG 1 cut(s) 77
HhaI GCGC 1 cut(s) 308
Hin1II CATG 3 cut(s) 34, 232, 323
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HindIII AAGCTT 1 cut(s) 143
HpaII CCGG 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
Hsp92II CATG 3 cut(s) 34, 232, 323
HspAI GCGC 1 cut(s) 306
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 5 cut(s) 90, 108, 134, 285, 312
Lsp1109I GCAGC 1 cut(s) 290
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 3 cut(s) 55, 115, 257
MflI RGATCY 1 cut(s) 60
MnlI CCTC 3 cut(s) 18, 241, 248
MseI TTAA 1 cut(s) 210
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 2 cut(s) 78, 300
Mva1269I GAATGC 1 cut(s) 164
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 82
NciI CCSGG 1 cut(s) 78
NdeII GATC 1 cut(s) 60
NlaIII CATG 3 cut(s) 34, 232, 323
NlaIV GGNNCC 1 cut(s) 134
NsbI TGCGCA 1 cut(s) 307
NspV TTCGAA 1 cut(s) 271
PaqCI CACCTGC 1 cut(s) 113
PctI GAATGC 1 cut(s) 164
PflMI CCANNNNNTGG 1 cut(s) 288
PkrI GCNGC 1 cut(s) 305
PsiI TTATAA 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 134
PspPI GGNCC 2 cut(s) 133, 250
PsuI RGATCY 1 cut(s) 60
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 304
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 2 cut(s) 133, 250
ScrFI CCNGG 2 cut(s) 78, 300
SetI ASST 4 cut(s) 114, 127, 147, 252
SfuI TTCGAA 1 cut(s) 271
SinI GGWCC 2 cut(s) 133, 250
StyD4I CCNGG 2 cut(s) 76, 298
TaqI TCGA 2 cut(s) 42, 271
TatI WGTACW 1 cut(s) 225
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseI GCWGC 1 cut(s) 303
TspDTI ATGAA 2 cut(s) 60, 245
TspGWI ACGGA 1 cut(s) 125
Van91I CCANNNNNTGG 1 cut(s) 288
VpaK11BI GGWCC 2 cut(s) 133, 250
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.