Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 85 - 132 | 3.6e-11 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 324 |
| AcoI | YGGCCR | 3 cut(s) | 198, 255, 301 |
| AcuI | CTGAAG | 1 cut(s) | 218 |
| AfaI | GTAC | 3 cut(s) | 105, 335, 374 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 44, 45, 253 |
| AflIII | ACRYGT | 2 cut(s) | 336, 369 |
| AgsI | TTSAA | 6 cut(s) | 44, 119, 139, 167, 223, 509 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 203, 235 |
| AluBI | AGCT | 2 cut(s) | 366, 407 |
| AluI | AGCT | 2 cut(s) | 366, 407 |
| Alw26I | GTCTC | 1 cut(s) | 57 |
| AoxI | GGCC | 3 cut(s) | 198, 255, 301 |
| ApeKI | GCWGC | 3 cut(s) | 81, 363, 404 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 123 |
| AspS9I | GGNCC | 1 cut(s) | 33 |
| AvaII | GGWCC | 1 cut(s) | 33 |
| BbvI | GCAGC | 3 cut(s) | 93, 375, 416 |
| BccI | CCATC | 1 cut(s) | 278 |
| BceAI | ACGGC | 1 cut(s) | 242 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 393, 427 |
| BcoDI | GTCTC | 1 cut(s) | 57 |
| BfmI | CTRYAG | 1 cut(s) | 496 |
| BisI | GCNGC | 3 cut(s) | 82, 364, 405 |
| BlsI | GCNGC | 3 cut(s) | 83, 365, 406 |
| Bme18I | GGWCC | 1 cut(s) | 33 |
| BmgT120I | GGNCC | 1 cut(s) | 33 |
| BmiI | GGNNCC | 3 cut(s) | 34, 35, 540 |
| BpmI | CTGGAG | 1 cut(s) | 369 |
| BsaAI | YACGTR | 1 cut(s) | 372 |
| BsaI | GGTCTC | 1 cut(s) | 57 |
| BsaJI | CCNNGG | 1 cut(s) | 258 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 32, 54, 84 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 44, 45, 253 |
| Bse118I | RCCGGY | 2 cut(s) | 253, 299 |
| Bse1I | ACTGG | 1 cut(s) | 352 |
| Bse3DI | GCAATG | 1 cut(s) | 513 |
| BseDI | CCNNGG | 1 cut(s) | 258 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 44, 45, 253 |
| BseMI | GCAATG | 1 cut(s) | 513 |
| BseNI | ACTGG | 1 cut(s) | 352 |
| BseRI | GAGGAG | 1 cut(s) | 7 |
| BseX3I | CGGCCG | 1 cut(s) | 255 |
| BseXI | GCAGC | 3 cut(s) | 93, 375, 416 |
| BseYI | CCCAGC | 1 cut(s) | 359 |
| Bsh1285I | CGRYCG | 1 cut(s) | 258 |
| BshFI | GGCC | 3 cut(s) | 200, 257, 303 |
| BsiEI | CGRYCG | 1 cut(s) | 258 |
| BsiSI | CCGG | 2 cut(s) | 254, 300 |
| BslFI | GGGAC | 2 cut(s) | 19, 405 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 44, 45, 253 |
| BsmAI | GTCTC | 1 cut(s) | 57 |
| BsmFI | GGGAC | 2 cut(s) | 19, 405 |
| BsnI | GGCC | 3 cut(s) | 200, 257, 303 |
| Bso31I | GGTCTC | 1 cut(s) | 57 |
| Bsp1407I | TGTACA | 1 cut(s) | 103 |
| BspANI | GGCC | 3 cut(s) | 200, 257, 303 |
| BspLI | GGNNCC | 3 cut(s) | 34, 35, 540 |
| BspTNI | GGTCTC | 1 cut(s) | 57 |
| BsrDI | GCAATG | 1 cut(s) | 513 |
| BsrFI | RCCGGY | 2 cut(s) | 253, 299 |
| BsrGI | TGTACA | 1 cut(s) | 103 |
| BsrI | ACTGG | 1 cut(s) | 352 |
| BssAI | RCCGGY | 2 cut(s) | 253, 299 |
| BssECI | CCNNGG | 1 cut(s) | 258 |
| Bst4CI | ACNGT | 3 cut(s) | 146, 400, 497 |
| BstAUI | TGTACA | 1 cut(s) | 103 |
| BstBAI | YACGTR | 1 cut(s) | 372 |
| BstC8I | GCNNGC | 3 cut(s) | 198, 255, 290 |
| BstDSI | CCRYGG | 1 cut(s) | 258 |
| BstMAI | GTCTC | 1 cut(s) | 57 |
| BstMCI | CGRYCG | 1 cut(s) | 258 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 206 |
| BstNSI | RCATGY | 1 cut(s) | 340 |
| BstSFI | CTRYAG | 1 cut(s) | 496 |
| BstV1I | GCAGC | 3 cut(s) | 93, 375, 416 |
| BstZI | CGGCCG | 1 cut(s) | 255 |
| BsuRI | GGCC | 3 cut(s) | 200, 257, 303 |
| BtgI | CCRYGG | 1 cut(s) | 258 |
| BtsIMutI | CAGTG | 1 cut(s) | 345 |
| Cac8I | GCNNGC | 3 cut(s) | 198, 255, 290 |
| Cfr10I | RCCGGY | 2 cut(s) | 253, 299 |
| Cfr13I | GGNCC | 1 cut(s) | 33 |
| Csp6I | GTAC | 3 cut(s) | 104, 334, 373 |
| CviAII | CATG | 4 cut(s) | 68, 277, 313, 337 |
| CviQI | GTAC | 3 cut(s) | 104, 334, 373 |
| EaeI | YGGCCR | 3 cut(s) | 198, 255, 301 |
| EagI | CGGCCG | 1 cut(s) | 255 |
| EclXI | CGGCCG | 1 cut(s) | 255 |
| Eco31I | GGTCTC | 1 cut(s) | 57 |
| Eco47I | GGWCC | 1 cut(s) | 33 |
| Eco52I | CGGCCG | 1 cut(s) | 255 |
| Eco57I | CTGAAG | 1 cut(s) | 218 |
| EcoO109I | RGGNCCY | 1 cut(s) | 33 |
| EcoT22I | ATGCAT | 1 cut(s) | 163 |
| FaeI | CATG | 4 cut(s) | 71, 280, 316, 340 |
| FaqI | GGGAC | 2 cut(s) | 19, 405 |
| FatI | CATG | 4 cut(s) | 67, 276, 312, 336 |
| Fnu4HI | GCNGC | 3 cut(s) | 82, 364, 405 |
| Fsp4HI | GCNGC | 3 cut(s) | 82, 364, 405 |
| GluI | GCNGC | 3 cut(s) | 82, 364, 405 |
| GsaI | CCCAGC | 1 cut(s) | 363 |
| GsuI | CTGGAG | 1 cut(s) | 369 |
| HaeIII | GGCC | 3 cut(s) | 200, 257, 303 |
| HapII | CCGG | 2 cut(s) | 254, 300 |
| Hin1II | CATG | 4 cut(s) | 71, 280, 316, 340 |
| HinfI | GANTC | 4 cut(s) | 124, 176, 351, 529 |
| HpaII | CCGG | 2 cut(s) | 254, 300 |
| Hpy166II | GTNNAC | 2 cut(s) | 328, 493 |
| Hpy188I | TCNGA | 3 cut(s) | 22, 237, 415 |
| Hpy8I | GTNNAC | 2 cut(s) | 328, 493 |
| Hpy99I | CGWCG | 1 cut(s) | 206 |
| HpyAV | CCTTC | 2 cut(s) | 242, 503 |
| HpyCH4III | ACNGT | 3 cut(s) | 146, 400, 497 |
| HpyCH4IV | ACGT | 3 cut(s) | 96, 324, 371 |
| HpyCH4V | TGCA | 3 cut(s) | 81, 161, 404 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 206 |
| HpySE526I | ACGT | 3 cut(s) | 96, 324, 371 |
| Hsp92II | CATG | 4 cut(s) | 71, 280, 316, 340 |
| KflI | GGGWCCC | 1 cut(s) | 33 |
| KroI | GCCGGC | 1 cut(s) | 253 |
| KroNI | GCCGGC | 1 cut(s) | 255 |
| Lsp1109I | GCAGC | 3 cut(s) | 93, 375, 416 |
| MaeII | ACGT | 3 cut(s) | 96, 324, 371 |
| MaeIII | GTNAC | 1 cut(s) | 352 |
| MluCI | AATT | 2 cut(s) | 376, 481 |
| MlyI | GAGTC | 2 cut(s) | 360, 538 |
| MmeI | TCCRAC | 1 cut(s) | 441 |
| MnlI | CCTC | 3 cut(s) | 23, 28, 184 |
| Mph1103I | ATGCAT | 1 cut(s) | 163 |
| MroNI | GCCGGC | 1 cut(s) | 253 |
| MroXI | GAANNNNTTC | 1 cut(s) | 123 |
| MslI | CAYNNNNRTG | 2 cut(s) | 275, 422 |
| MspI | CCGG | 2 cut(s) | 254, 300 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 206 |
| NaeI | GCCGGC | 1 cut(s) | 255 |
| NgoMIV | GCCGGC | 1 cut(s) | 253 |
| NlaIII | CATG | 4 cut(s) | 71, 280, 316, 340 |
| NlaIV | GGNNCC | 3 cut(s) | 34, 35, 540 |
| NmeAIII | GCCGAG | 1 cut(s) | 272 |
| NmuCI | GTSAC | 1 cut(s) | 352 |
| NsiI | ATGCAT | 1 cut(s) | 163 |
| NspI | RCATGY | 1 cut(s) | 340 |
| PciI | ACATGT | 1 cut(s) | 336 |
| PdiI | GCCGGC | 1 cut(s) | 255 |
| PdmI | GAANNNNTTC | 1 cut(s) | 123 |
| PfeI | GAWTC | 2 cut(s) | 124, 176 |
| PkrI | GCNGC | 3 cut(s) | 83, 365, 406 |
| PleI | GAGTC | 2 cut(s) | 359, 537 |
| PpsI | GAGTC | 2 cut(s) | 359, 537 |
| Ppu21I | YACGTR | 1 cut(s) | 372 |
| PpuMI | RGGWCCY | 1 cut(s) | 33 |
| PscI | ACATGT | 1 cut(s) | 336 |
| Psp1406I | AACGTT | 1 cut(s) | 324 |
| Psp5II | RGGWCCY | 1 cut(s) | 33 |
| PspFI | CCCAGC | 1 cut(s) | 359 |
| PspN4I | GGNNCC | 3 cut(s) | 34, 35, 540 |
| PspPI | GGNCC | 1 cut(s) | 33 |
| PspPPI | RGGWCCY | 1 cut(s) | 33 |
| RsaI | GTAC | 3 cut(s) | 105, 335, 374 |
| RsaNI | GTAC | 3 cut(s) | 104, 334, 373 |
| RseI | CAYNNNNRTG | 2 cut(s) | 275, 422 |
| SatI | GCNGC | 3 cut(s) | 82, 364, 405 |
| Sau96I | GGNCC | 1 cut(s) | 33 |
| SchI | GAGTC | 2 cut(s) | 360, 538 |
| SetI | ASST | 8 cut(s) | 15, 99, 132, 327, 335, 368, 374, 409 |
| SfcI | CTRYAG | 1 cut(s) | 496 |
| SinI | GGWCC | 1 cut(s) | 33 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 275, 422 |
| Sse9I | AATT | 2 cut(s) | 376, 481 |
| TaaI | ACNGT | 3 cut(s) | 146, 400, 497 |
| TaiI | ACGT | 3 cut(s) | 99, 327, 374 |
| TasI | AATT | 2 cut(s) | 376, 481 |
| TatI | WGTACW | 1 cut(s) | 103 |
| TfiI | GAWTC | 2 cut(s) | 124, 176 |
| TscAI | CASTG | 1 cut(s) | 352 |
| TseFI | GTSAC | 1 cut(s) | 352 |
| TseI | GCWGC | 3 cut(s) | 81, 363, 404 |
| Tsp45I | GTSAC | 1 cut(s) | 352 |
| TspDTI | ATGAA | 1 cut(s) | 197 |
| TspRI | CASTG | 1 cut(s) | 352 |
| VpaK11BI | GGWCC | 1 cut(s) | 33 |
| XceI | RCATGY | 1 cut(s) | 340 |
| XmnI | GAANNNNTTC | 1 cut(s) | 123 |
| Zsp2I | ATGCAT | 1 cut(s) | 163 |