RLG00000030009

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000101
Physical Location & Seq
Forward (+)
53294340 .. 53295602
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030009

Sequence Viewer

Length: 1152 bp
ATGGGGGACACCAAGGTGAAGTCCACTACTTGCCCCAATTCTTGTGCTGATGACCTCAAGAAACATGTAATGGAGGTTTTTGAGGAGGCCACCAAAGACTGTGAGGACTTTGTTATGCCACTAAAATTTTCCATGATTCGCAACTATGATGACCTTAACGAATATGCTATTCAAATATTCGATTCTATGGCAAACGACGACCTCCTCGACGAAGCCAAAGAGCTCTTTAAGCCTCTCTCTGACCAGGGCATACTGCCAGACGTGGCTGTCCTCACCATTATCATCGGGGAATATGCCTTTGCTGGCGAGATCAAGGCTGCTCTCAAGGTCTACCACCGCATGTTAGCCACTGGTGTCTCCCCCACCTCCCACACTTACACTCTACTCATCACGGCCCTTGCAGCAGACTCTTCCGATGTCAATTATGTTGGCCTTGCCAAGAAGTATATTATGGAAATGTTGGATAAGGGATTGAAGCCCCATGATGTGTCCTATATCTCTGTCTTTGATGCCACTGCCCGCCAGGAGTCGGTGGAGAAGGCCAGGGAGTTCCTTAAGCAGATAAAAGCAAAAGGGTTCAGCCCTGAGTCCAGTGTTTTCAACTTTGACGAAGCCCACCTCACAGAGGCAATGAAGACAACGAAGTTGCTCTATGATCTCGTCAACAACACGACTGACAAGGATATACAAAAGCTCTTCCGCAAGTGGTGCACCAGTGGACATGGCTTCCAGAAAGAGTCAATGAAGATGTACAAGGCTCTGGTGAAGGATGGCAATGCAGACGAGGCCATGGAGGTTCTTATGTTGTTCATTAAGGGTATAAAACCGGCTGTCCTAATCCATACCTGCGTTATTGAGACCTACGTCAATGCTGGCAAGATCAAGGGTGCTCGTGAGGCGTACAAGGACATGTTAGCTGCTGGGCGGCCCAATGCTTCTACCTACACTGCAGTGATAGAGGGCTTTGCAAAGCAGGAGGACAAGGCAGCTGAGGAGGAGGGAAAAGAGTTGGTGGAGGTGACGATGGGTAAGGGGTTTGTGCCAAACGTAAAGACTATGATGGAGGTTTTAAAGGGAAGACCAACAGCTGTGATAAGAAGGGTCATGAATATTGTCCTTTCTAAATTAAGGGCTGATGCATTGCTTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

384

Amino Acids

42.71

Weight (kDa)

5.92

Isoelectric Point (pI)

28.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 86 - 134 4.6e-11 PPR repeat family
PPR_long PF17177 103 - 196 3.3e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 278 - 324 1.2e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
Acc36I ACCTGC 1 cut(s) 854
AccI GTMKAC 1 cut(s) 330
AciI CCGC 4 cut(s) 337, 520, 700, 925
AcsI RAATTY 1 cut(s) 125
AfaI GTAC 2 cut(s) 752, 902
AfiI CCNNNNNNNGG 2 cut(s) 529, 625
AflII CTTAAG 1 cut(s) 554
AflIII ACRYGT 2 cut(s) 64, 909
AgsI TTSAA 3 cut(s) 173, 475, 601
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 3 cut(s) 243, 522, 542
AleI CACNNNNGTG 2 cut(s) 14, 950
AluBI AGCT 5 cut(s) 223, 694, 917, 989, 1088
AluI AGCT 5 cut(s) 223, 694, 917, 989, 1088
Alw21I GWGCWC 3 cut(s) 225, 713, 892
Alw26I GTCTC 2 cut(s) 361, 851
Alw44I GTGCAC 1 cut(s) 709
AoxI GGCC 6 cut(s) 87, 393, 430, 540, 786, 926
ApaLI GTGCAC 1 cut(s) 709
ApeKI GCWGC 4 cut(s) 317, 401, 917, 986
ApoI RAATTY 1 cut(s) 125
AspS9I GGNCC 2 cut(s) 394, 927
AsuHPI GGTGA 4 cut(s) 28, 265, 775, 1030
BaeGI GKGCMC 1 cut(s) 713
BanII GRGCYC 1 cut(s) 225
BauI CACGAG 1 cut(s) 891
BbsI GAAGAC 2 cut(s) 641, 1084
Bbv12I GWGCWC 3 cut(s) 225, 713, 892
BbvCI CCTCAGC 1 cut(s) 990
BbvI GCAGC 4 cut(s) 304, 413, 904, 998
BccI CCATC 3 cut(s) 764, 1018, 1054
BceAI ACGGC 1 cut(s) 408
BciT130I CCWGG 3 cut(s) 245, 524, 544
BcoDI GTCTC 2 cut(s) 361, 851
BfmI CTRYAG 1 cut(s) 948
BfrI CTTAAG 1 cut(s) 554
BfuAI ACCTGC 1 cut(s) 854
BisI GCNGC 5 cut(s) 318, 402, 918, 926, 987
BlsI GCNGC 5 cut(s) 319, 403, 919, 927, 988
Bme1390I CCNGG 3 cut(s) 245, 524, 544
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 2 cut(s) 394, 927
BmrFI CCNGG 3 cut(s) 245, 524, 544
BmsI GCATC 2 cut(s) 499, 1126
BoxI GACNNNNGTC 1 cut(s) 863
BpiI GAAGAC 2 cut(s) 641, 1084
Bpu10I CCTNAGC 1 cut(s) 990
BpuEI CTTGAG 2 cut(s) 41, 308
BsaI GGTCTC 1 cut(s) 851
BsaJI CCNNGG 4 cut(s) 12, 244, 543, 789
Bsc4I CCNNNNNNNGG 2 cut(s) 529, 625
Bse118I RCCGGY 1 cut(s) 826
Bse1I ACTGG 3 cut(s) 355, 591, 714
Bse3DI GCAATG 3 cut(s) 636, 781, 1139
BseBI CCWGG 3 cut(s) 245, 524, 544
BseDI CCNNGG 4 cut(s) 12, 244, 543, 789
BseGI GGATG 1 cut(s) 775
BseLI CCNNNNNNNGG 2 cut(s) 529, 625
BseMI GCAATG 3 cut(s) 636, 781, 1139
BseMII CTCAG 2 cut(s) 576, 981
BseNI ACTGG 3 cut(s) 355, 591, 714
BseRI GAGGAG 4 cut(s) 98, 194, 1007, 1010
BseSI GKGCMC 1 cut(s) 713
BseXI GCAGC 4 cut(s) 304, 413, 904, 998
BseYI CCCAGC 1 cut(s) 920
BshFI GGCC 6 cut(s) 89, 395, 432, 542, 788, 928
BsiHKAI GWGCWC 3 cut(s) 225, 713, 892
BsiSI CCGG 1 cut(s) 827
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 2 cut(s) 529, 625
BsmAI GTCTC 2 cut(s) 361, 851
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 6 cut(s) 89, 395, 432, 542, 788, 928
Bso31I GGTCTC 1 cut(s) 851
Bsp1286I GDGCHC 3 cut(s) 225, 713, 892
Bsp1407I TGTACA 1 cut(s) 750
Bsp143I GATC 3 cut(s) 309, 655, 879
Bsp19I CCATGG 1 cut(s) 789
BspACI CCGC 4 cut(s) 337, 520, 700, 925
BspANI GGCC 6 cut(s) 89, 395, 432, 542, 788, 928
BspCNI CTCAG 2 cut(s) 577, 982
BspHI TCATGA 1 cut(s) 1104
BspMAI CTGCAG 1 cut(s) 952
BspMI ACCTGC 1 cut(s) 854
BspQI GCTCTTC 1 cut(s) 701
BspTI CTTAAG 1 cut(s) 554
BspTNI GGTCTC 1 cut(s) 851
BsrDI GCAATG 3 cut(s) 636, 781, 1139
BsrFI RCCGGY 1 cut(s) 826
BsrGI TGTACA 1 cut(s) 750
BsrI ACTGG 3 cut(s) 355, 591, 714
BssAI RCCGGY 1 cut(s) 826
BssECI CCNNGG 4 cut(s) 12, 244, 543, 789
BssMI GATC 3 cut(s) 309, 655, 879
BssSI CACGAG 1 cut(s) 891
BssT1I CCWWGG 2 cut(s) 12, 789
Bst2BI CACGAG 1 cut(s) 891
Bst2UI CCWGG 3 cut(s) 245, 524, 544
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 2 cut(s) 415, 701
BstAFI CTTAAG 1 cut(s) 554
BstAPI GCANNNNNTGC 1 cut(s) 708
BstAUI TGTACA 1 cut(s) 750
BstC8I GCNNGC 3 cut(s) 304, 520, 874
BstDEI CTNAG 2 cut(s) 585, 990
BstDSI CCRYGG 1 cut(s) 789
BstENI CCTNNNNNAGG 1 cut(s) 623
BstF5I GGATG 1 cut(s) 775
BstKTI GATC 3 cut(s) 312, 658, 882
BstMAI GTCTC 2 cut(s) 361, 851
BstMBI GATC 3 cut(s) 309, 655, 879
BstMWI GCNNNNNNNGC 5 cut(s) 229, 401, 708, 785, 896
BstNI CCWGG 3 cut(s) 245, 524, 544
BstNSI RCATGY 3 cut(s) 68, 343, 913
BstPAI GACNNNNGTC 1 cut(s) 863
BstSCI CCNGG 3 cut(s) 243, 522, 542
BstSFI CTRYAG 1 cut(s) 948
BstSLI GKGCMC 1 cut(s) 713
BstV1I GCAGC 4 cut(s) 304, 413, 904, 998
BstV2I GAAGAC 2 cut(s) 641, 1084
BsuRI GGCC 6 cut(s) 89, 395, 432, 542, 788, 928
BtgI CCRYGG 1 cut(s) 789
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 1 cut(s) 775
BtsI GCAGTG 3 cut(s) 513, 945, 957
BtsIMutI CAGTG 6 cut(s) 348, 513, 598, 721, 945, 957
BveI ACCTGC 1 cut(s) 854
Cac8I GCNNGC 3 cut(s) 304, 520, 874
CciI TCATGA 1 cut(s) 1104
Cfr10I RCCGGY 1 cut(s) 826
Cfr13I GGNCC 2 cut(s) 394, 927
Csp6I GTAC 2 cut(s) 751, 901
CviAII CATG 8 cut(s) 65, 133, 340, 482, 722, 790, 910, 1105
CviQI GTAC 2 cut(s) 751, 901
DdeI CTNAG 2 cut(s) 585, 990
DpnI GATC 3 cut(s) 311, 657, 881
DpnII GATC 3 cut(s) 309, 655, 879
DraI TTTAAA 1 cut(s) 1071
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
Eam1104I CTCTTC 2 cut(s) 415, 701
EarI CTCTTC 2 cut(s) 415, 701
Ecl136II GAGCTC 1 cut(s) 223
Eco130I CCWWGG 2 cut(s) 12, 789
Eco24I GRGCYC 1 cut(s) 225
Eco31I GGTCTC 1 cut(s) 851
Eco53kI GAGCTC 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 223
EcoNI CCTNNNNNAGG 1 cut(s) 623
EcoRII CCWGG 3 cut(s) 243, 522, 542
EcoT14I CCWWGG 2 cut(s) 12, 789
EcoT22I ATGCAT 1 cut(s) 1141
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 2 cut(s) 12, 789
FaeI CATG 8 cut(s) 68, 136, 343, 485, 725, 793, 913, 1108
FaqI GGGAC 1 cut(s) 20
FatI CATG 8 cut(s) 64, 132, 339, 481, 721, 789, 909, 1104
FauI CCCGC 1 cut(s) 527
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 5 cut(s) 318, 402, 918, 926, 987
FokI GGATG 1 cut(s) 782
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 5 cut(s) 318, 402, 918, 926, 987
GluI GCNGC 5 cut(s) 318, 402, 918, 926, 987
GsaI CCCAGC 1 cut(s) 924
HaeIII GGCC 6 cut(s) 89, 395, 432, 542, 788, 928
HapII CCGG 1 cut(s) 827
Hin1II CATG 8 cut(s) 68, 136, 343, 485, 725, 793, 913, 1108
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HinfI GANTC 6 cut(s) 136, 182, 407, 527, 587, 737
HpaII CCGG 1 cut(s) 827
HphI GGTGA 4 cut(s) 28, 265, 775, 1030
Hpy166II GTNNAC 5 cut(s) 24, 331, 664, 711, 719
Hpy188I TCNGA 2 cut(s) 241, 415
Hpy188III TCNNGA 4 cut(s) 58, 730, 893, 1105
Hpy8I GTNNAC 5 cut(s) 24, 331, 664, 711, 719
Hpy99I CGWCG 2 cut(s) 200, 212
HpyAV CCTTC 3 cut(s) 532, 760, 1092
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 3 cut(s) 261, 864, 1047
HpyCH4V TGCA 6 cut(s) 401, 711, 779, 950, 968, 1139
HpyF10VI GCNNNNNNNGC 5 cut(s) 229, 401, 708, 785, 896
HpyF3I CTNAG 2 cut(s) 585, 990
HpySE526I ACGT 3 cut(s) 261, 864, 1047
Hsp92II CATG 8 cut(s) 68, 136, 343, 485, 725, 793, 913, 1108
Kzo9I GATC 3 cut(s) 309, 655, 879
LguI GCTCTTC 1 cut(s) 701
Lsp1109I GCAGC 4 cut(s) 304, 413, 904, 998
LweI GCATC 2 cut(s) 499, 1126
MaeII ACGT 3 cut(s) 261, 864, 1047
MaeIII GTNAC 1 cut(s) 1018
MalI GATC 3 cut(s) 311, 657, 881
MboI GATC 3 cut(s) 309, 655, 879
MboII GAAGA 5 cut(s) 402, 646, 688, 757, 1089
MhlI GDGCHC 3 cut(s) 225, 713, 892
MluCI AATT 4 cut(s) 37, 125, 421, 1124
MlyI GAGTC 4 cut(s) 401, 536, 596, 746
MmeI TCCRAC 1 cut(s) 441
Mph1103I ATGCAT 1 cut(s) 1141
MseI TTAA 6 cut(s) 156, 228, 555, 813, 1070, 1127
MslI CAYNNNNRTG 2 cut(s) 14, 950
MspA1I CMGCKG 2 cut(s) 989, 1088
MspCI CTTAAG 1 cut(s) 554
MspI CCGG 1 cut(s) 827
MspR9I CCNGG 3 cut(s) 245, 524, 544
MvaI CCWGG 3 cut(s) 245, 524, 544
MwoI GCNNNNNNNGC 5 cut(s) 229, 401, 708, 785, 896
NcoI CCATGG 1 cut(s) 789
NdeII GATC 3 cut(s) 309, 655, 879
NlaIII CATG 8 cut(s) 68, 136, 343, 485, 725, 793, 913, 1108
NmuCI GTSAC 1 cut(s) 1018
NsiI ATGCAT 1 cut(s) 1141
NspI RCATGY 3 cut(s) 68, 343, 913
OliI CACNNNNGTG 2 cut(s) 14, 950
PagI TCATGA 1 cut(s) 1104
PciI ACATGT 2 cut(s) 64, 909
PciSI GCTCTTC 1 cut(s) 701
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PfeI GAWTC 2 cut(s) 136, 182
PkrI GCNGC 5 cut(s) 319, 403, 919, 927, 988
PleI GAGTC 4 cut(s) 401, 535, 595, 745
PpsI GAGTC 4 cut(s) 401, 535, 595, 745
PscI ACATGT 2 cut(s) 64, 909
PshAI GACNNNNGTC 1 cut(s) 863
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 3 cut(s) 243, 522, 542
PspFI CCCAGC 1 cut(s) 920
PspGI CCWGG 3 cut(s) 243, 522, 542
PspPI GGNCC 2 cut(s) 394, 927
PstI CTGCAG 1 cut(s) 952
PvuII CAGCTG 2 cut(s) 989, 1088
RsaI GTAC 2 cut(s) 752, 902
RsaNI GTAC 2 cut(s) 751, 901
RseI CAYNNNNRTG 2 cut(s) 14, 950
SacI GAGCTC 1 cut(s) 225
SapI GCTCTTC 1 cut(s) 701
SaqAI TTAA 6 cut(s) 156, 228, 555, 813, 1070, 1127
SatI GCNGC 5 cut(s) 318, 402, 918, 926, 987
Sau3AI GATC 3 cut(s) 309, 655, 879
Sau96I GGNCC 2 cut(s) 394, 927
SchI GAGTC 4 cut(s) 401, 536, 596, 746
ScrFI CCNGG 3 cut(s) 245, 524, 544
SduI GDGCHC 3 cut(s) 225, 713, 892
SfaNI GCATC 2 cut(s) 499, 1126
SfcI CTRYAG 1 cut(s) 948
SmiMI CAYNNNNRTG 2 cut(s) 14, 950
SmlI CTYRAG 3 cut(s) 56, 323, 554
SmoI CTYRAG 3 cut(s) 56, 323, 554
Sse9I AATT 4 cut(s) 37, 125, 421, 1124
SsiI CCGC 4 cut(s) 337, 520, 700, 925
SspI AATATT 2 cut(s) 177, 1111
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 3 cut(s) 243, 522, 542
StyI CCWWGG 2 cut(s) 12, 789
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 3 cut(s) 264, 867, 1050
TaqI TCGA 2 cut(s) 180, 207
TasI AATT 4 cut(s) 37, 125, 421, 1124
TatI WGTACW 1 cut(s) 750
TauI GCSGC 1 cut(s) 928
TfiI GAWTC 2 cut(s) 136, 182
Tru1I TTAA 6 cut(s) 156, 228, 555, 813, 1070, 1127
Tru9I TTAA 6 cut(s) 156, 228, 555, 813, 1070, 1127
TscAI CASTG 6 cut(s) 355, 520, 598, 721, 952, 957
TseFI GTSAC 1 cut(s) 1018
TseI GCWGC 4 cut(s) 317, 401, 917, 986
Tsp45I GTSAC 1 cut(s) 1018
TspDTI ATGAA 4 cut(s) 647, 758, 799, 1121
TspRI CASTG 6 cut(s) 355, 520, 598, 721, 952, 957
Vha464I CTTAAG 1 cut(s) 554
VneI GTGCAC 1 cut(s) 709
XagI CCTNNNNNAGG 1 cut(s) 623
XapI RAATTY 1 cut(s) 125
XceI RCATGY 3 cut(s) 68, 343, 913
XmiI GTMKAC 1 cut(s) 330
Zsp2I ATGCAT 1 cut(s) 1141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.