RLG00000001929

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000101
Physical Location & Seq
Forward (+)
23168397 .. 23169643
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001929

Sequence Viewer

Length: 1194 bp
ATGGCGGAGACTGAAGTCAAGTCCAATTCTTGTGCGGATGACCTCGAGAAACATGTAATGAAGGTTTCCAAGGAGGCCACCAAAGACTGTGAGGACAAGGAAGTGAAAGAAATATTTGACATGATTAGGAACTATGACGACCTTAACAAGTATGCAATTTCGGTGTTCAATTCCATGGCAAATGACAAGTTTATTGAGGTAGCTAGAGAGCTCTTTAAGCCTCCCTCTGAGTCGACTGCCGTACTGCCTGATGTGGCCATCTACTCCGTTGTCATTTGGGCCTGCATCTCGGCCGGCAAGATCATGGCTGCTCACAAGGTCGACCACCACATGATAGCCAACGGTGTCGCCCCCACCTCCTGCACTTACATTATACTCATCAACACACTGGCAACAAACTCATCTTCTGATGGGATGATGCCTATTTTGTCCTCCTACCTGGCCGTCTTCAAAGCCATTGCTCGCCAGGAGCCGGTGGAGAAGGCCAGGGAGTTCCTTGAGCAGATACAAACAAAGGGGTTCAGCCCTAAGTTGGATGTTCCTCACTTTGATGTGGCCTACATGGAAGAAGCAATGAATGCGTTGAAGATGTCTGATGTTCTTATCAACGCCACAACTGACAAGAAGTTGCAAAAACTCTACCGTGAGTGGAGCACCAACCGCAAATCCCTCAGGGATGAGTTTCTGAAGATGTACAAAGCCTTGAAAGCCGATGGCAATGATGACCAGGCCATGGAGCTCTATAGGCGCGCTTGGGATACAAACATAATTCCAGAGGTCGTACTTCACACCGGTGTTATTGAAGACTGTCTCAAGGCTGGCAATGCCGAGTGTGCTCTGAAGGCTTACTGGACCATGTTAGCTACTGGGGTTGCCCCAAACTCCTATACATACACTGTTTTAATCAAGGGATTCACTGCTGACCCCCACTTCGTTGAAGATGCCAAGAAGTGCTTGCTTGAGATGATGGACAAGGGAATGAGGCCCAATGCTTCTACCTACACTGCAGTCATAGAAGGGTTTGCAAGGCAAGAGGACAAGGAAGCTGAGGGGGAAGGTAAACAGTTGGTGGAGGTCATGATGGGTAAGGGGTTTGAGCCAAATGTAAAGGCTATGATGGAGGTTTTAAAGGGAAGACCAAAAGGTATTATAAAAAGGGTCATCAGCATTGTTCTTTCCAAGTTGAAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

398

Amino Acids

44.45

Weight (kDa)

5.93

Isoelectric Point (pI)

33.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 83 - 131 1.4e-08 PPR repeat family
PPR_2 PF13041 258 - 305 6.1e-08 PPR repeat family
PPR_long PF17177 266 - 371 9.1e-07 Pentacotripeptide-repeat region of PRORP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1151
AccB7I CCANNNNNTGG 1 cut(s) 733
AccI GTMKAC 2 cut(s) 233, 321
AccII CGCG 1 cut(s) 750
AciI CCGC 3 cut(s) 5, 35, 661
AcoI YGGCCR 3 cut(s) 255, 291, 441
AcuI CTGAAG 3 cut(s) 33, 707, 860
AfaI GTAC 3 cut(s) 243, 695, 783
AfiI CCNNNNNNNGG 3 cut(s) 472, 532, 733
AflIII ACRYGT 1 cut(s) 52
AgeI ACCGGT 1 cut(s) 791
AgsI TTSAA 7 cut(s) 169, 451, 586, 706, 803, 938, 1186
AjnI CCWGG 4 cut(s) 438, 465, 485, 726
AleI CACNNNNGTG 1 cut(s) 792
AluBI AGCT 5 cut(s) 203, 211, 739, 863, 1046
AluI AGCT 5 cut(s) 203, 211, 739, 863, 1046
Alw21I GWGCWC 4 cut(s) 213, 656, 741, 838
Alw26I GTCTC 2 cut(s) 2, 815
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 9 cut(s) 75, 255, 279, 291, 441, 483, 555, 729, 983
ApeKI GCWGC 1 cut(s) 308
ArsI GACNNNNNNTTYG 2 cut(s) 914, 946
AsiGI ACCGGT 1 cut(s) 791
AspLEI GCGC 2 cut(s) 750, 752
AspS9I GGNCC 3 cut(s) 279, 852, 984
AvaI CYCGRG 1 cut(s) 44
AvaII GGWCC 1 cut(s) 852
AxyI CCTNAGG 1 cut(s) 671
BalI TGGCCA 1 cut(s) 257
BanII GRGCYC 2 cut(s) 213, 741
BbsI GAAGAC 3 cut(s) 439, 810, 1141
Bbv12I GWGCWC 4 cut(s) 213, 656, 741, 838
BbvCI CCTCAGC 1 cut(s) 1047
BbvI GCAGC 1 cut(s) 295
BccI CCATC 6 cut(s) 266, 404, 707, 961, 1075, 1111
BceAI ACGGC 2 cut(s) 224, 428
BciT130I CCWGG 4 cut(s) 440, 467, 487, 728
BciVI GTATCC 1 cut(s) 751
BcoDI GTCTC 2 cut(s) 2, 815
BfaI CTAG 1 cut(s) 204
BfmI CTRYAG 2 cut(s) 742, 1005
BfuI GTATCC 1 cut(s) 751
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
Bme1390I CCNGG 4 cut(s) 440, 467, 487, 728
Bme18I GGWCC 1 cut(s) 852
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 3 cut(s) 279, 852, 984
BmiI GGNNCC 1 cut(s) 471
BmrFI CCNGG 4 cut(s) 440, 467, 487, 728
BmrI ACTGGG 1 cut(s) 876
BmsI GCATC 3 cut(s) 294, 408, 931
BmuI ACTGGG 1 cut(s) 876
BoxI GACNNNNGTC 1 cut(s) 14
BpiI GAAGAC 3 cut(s) 439, 810, 1141
Bpu10I CCTNAGC 1 cut(s) 1047
BpuEI CTTGAG 3 cut(s) 518, 797, 980
BsaJI CCNNGG 4 cut(s) 69, 174, 486, 732
BsaWI WCCGGW 1 cut(s) 791
Bsc4I CCNNNNNNNGG 3 cut(s) 472, 532, 733
Bse118I RCCGGY 3 cut(s) 293, 472, 791
Bse1I ACTGG 3 cut(s) 393, 854, 871
Bse21I CCTNAGG 1 cut(s) 671
Bse3DI GCAATG 4 cut(s) 456, 579, 724, 829
BseBI CCWGG 4 cut(s) 440, 467, 487, 728
BseDI CCNNGG 4 cut(s) 69, 174, 486, 732
BseGI GGATG 4 cut(s) 43, 420, 541, 682
BseLI CCNNNNNNNGG 3 cut(s) 472, 532, 733
BseMI GCAATG 4 cut(s) 456, 579, 724, 829
BseMII CTCAG 3 cut(s) 219, 685, 1038
BseNI ACTGG 3 cut(s) 393, 854, 871
BsePI GCGCGC 1 cut(s) 748
BseX3I CGGCCG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 295
BsgI GTGCAG 1 cut(s) 346
Bsh1236I CGCG 1 cut(s) 750
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 9 cut(s) 77, 257, 281, 293, 443, 485, 557, 731, 985
BshTI ACCGGT 1 cut(s) 791
BsiEI CGRYCG 1 cut(s) 294
BsiHKAI GWGCWC 4 cut(s) 213, 656, 741, 838
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 3 cut(s) 294, 473, 792
BslI CCNNNNNNNGG 3 cut(s) 472, 532, 733
BsmAI GTCTC 2 cut(s) 2, 815
BsmI GAATGC 1 cut(s) 583
BsnI GGCC 9 cut(s) 77, 257, 281, 293, 443, 485, 557, 731, 985
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 4 cut(s) 213, 656, 741, 838
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 1 cut(s) 300
Bsp19I CCATGG 2 cut(s) 174, 732
BspACI CCGC 3 cut(s) 5, 35, 661
BspANI GGCC 9 cut(s) 77, 257, 281, 293, 443, 485, 557, 731, 985
BspCNI CTCAG 3 cut(s) 220, 684, 1039
BspFNI CGCG 1 cut(s) 750
BspHI TCATGA 1 cut(s) 1077
BspLI GGNNCC 1 cut(s) 471
BspMAI CTGCAG 1 cut(s) 1009
BsrDI GCAATG 4 cut(s) 456, 579, 724, 829
BsrFI RCCGGY 3 cut(s) 293, 472, 791
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 3 cut(s) 393, 854, 871
BssAI RCCGGY 3 cut(s) 293, 472, 791
BssECI CCNNGG 4 cut(s) 69, 174, 486, 732
BssHII GCGCGC 1 cut(s) 748
BssMI GATC 1 cut(s) 300
BssT1I CCWWGG 3 cut(s) 69, 174, 732
Bst2UI CCWGG 4 cut(s) 440, 467, 487, 728
Bst4CI ACNGT 6 cut(s) 89, 344, 644, 809, 898, 1065
BstAPI GCANNNNNTGC 1 cut(s) 578
BstAUI TGTACA 1 cut(s) 693
BstC8I GCNNGC 6 cut(s) 283, 295, 463, 750, 820, 956
BstDEI CTNAG 4 cut(s) 228, 528, 671, 1047
BstDSI CCRYGG 2 cut(s) 174, 732
BstF5I GGATG 4 cut(s) 43, 420, 541, 682
BstFNI CGCG 1 cut(s) 750
BstHHI GCGC 2 cut(s) 750, 752
BstKTI GATC 1 cut(s) 303
BstMAI GTCTC 2 cut(s) 2, 815
BstMBI GATC 1 cut(s) 300
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 8 cut(s) 217, 578, 660, 707, 745, 824, 833, 842
BstNI CCWGG 4 cut(s) 440, 467, 487, 728
BstNSI RCATGY 1 cut(s) 56
BstPAI GACNNNNGTC 1 cut(s) 14
BstSCI CCNGG 4 cut(s) 438, 465, 485, 726
BstSFI CTRYAG 2 cut(s) 742, 1005
BstUI CGCG 1 cut(s) 750
BstV1I GCAGC 1 cut(s) 295
BstV2I GAAGAC 3 cut(s) 439, 810, 1141
BstZI CGGCCG 1 cut(s) 291
Bsu36I CCTNAGG 1 cut(s) 671
BsuI GTATCC 1 cut(s) 751
BsuRI GGCC 9 cut(s) 77, 257, 281, 293, 443, 485, 557, 731, 985
BtgI CCRYGG 2 cut(s) 174, 732
BtsCI GGATG 4 cut(s) 43, 420, 541, 682
BtsI GCAGTG 2 cut(s) 915, 1002
BtsIMutI CAGTG 4 cut(s) 386, 894, 915, 1002
Cac8I GCNNGC 6 cut(s) 283, 295, 463, 750, 820, 956
CciI TCATGA 1 cut(s) 1077
CfoI GCGC 2 cut(s) 750, 752
Cfr10I RCCGGY 3 cut(s) 293, 472, 791
Cfr13I GGNCC 3 cut(s) 279, 852, 984
Csp6I GTAC 3 cut(s) 242, 694, 782
CspAI ACCGGT 1 cut(s) 791
CviAII CATG 9 cut(s) 53, 121, 175, 304, 331, 562, 733, 856, 1078
CviQI GTAC 3 cut(s) 242, 694, 782
DdeI CTNAG 4 cut(s) 228, 528, 671, 1047
DpnI GATC 1 cut(s) 302
DpnII GATC 1 cut(s) 300
DraI TTTAAA 1 cut(s) 1128
EaeI YGGCCR 3 cut(s) 255, 291, 441
EagI CGGCCG 1 cut(s) 291
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 2 cut(s) 211, 739
EclXI CGGCCG 1 cut(s) 291
Eco130I CCWWGG 3 cut(s) 69, 174, 732
Eco24I GRGCYC 2 cut(s) 213, 741
Eco47I GGWCC 1 cut(s) 852
Eco52I CGGCCG 1 cut(s) 291
Eco53kI GAGCTC 2 cut(s) 211, 739
Eco57I CTGAAG 3 cut(s) 33, 707, 860
Eco81I CCTNAGG 1 cut(s) 671
Eco88I CYCGRG 1 cut(s) 44
EcoICRI GAGCTC 2 cut(s) 211, 739
EcoRII CCWGG 4 cut(s) 438, 465, 485, 726
EcoT14I CCWWGG 3 cut(s) 69, 174, 732
EcoT38I GRGCYC 2 cut(s) 213, 741
ErhI CCWWGG 3 cut(s) 69, 174, 732
FaeI CATG 9 cut(s) 56, 124, 178, 307, 334, 565, 736, 859, 1081
FalI AAGNNNNNCTT 2 cut(s) 938, 970
FatI CATG 9 cut(s) 52, 120, 174, 303, 330, 561, 732, 855, 1077
FblI GTMKAC 2 cut(s) 233, 321
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 4 cut(s) 50, 427, 548, 689
FriOI GRGCYC 2 cut(s) 213, 741
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 1 cut(s) 204
GlaI GCGC 2 cut(s) 749, 751
GluI GCNGC 1 cut(s) 309
HaeIII GGCC 9 cut(s) 77, 257, 281, 293, 443, 485, 557, 731, 985
HapII CCGG 3 cut(s) 294, 473, 792
HhaI GCGC 2 cut(s) 750, 752
Hin1II CATG 9 cut(s) 56, 124, 178, 307, 334, 565, 736, 859, 1081
Hin6I GCGC 2 cut(s) 748, 750
HinP1I GCGC 2 cut(s) 748, 750
HincII GTYRAC 2 cut(s) 234, 322
HindII GTYRAC 2 cut(s) 234, 322
HinfI GANTC 2 cut(s) 230, 912
HpaII CCGG 3 cut(s) 294, 473, 792
Hpy166II GTNNAC 3 cut(s) 234, 322, 1061
Hpy188I TCNGA 5 cut(s) 229, 409, 595, 687, 840
Hpy188III TCNNGA 3 cut(s) 46, 773, 1078
Hpy8I GTNNAC 3 cut(s) 234, 322, 1061
HpyAV CCTTC 6 cut(s) 55, 475, 835, 1010, 1049, 1180
HpyCH4III ACNGT 6 cut(s) 89, 344, 644, 809, 898, 1065
HpyCH4V TGCA 6 cut(s) 155, 285, 363, 631, 1007, 1025
HpyF10VI GCNNNNNNNGC 8 cut(s) 217, 578, 660, 707, 745, 824, 833, 842
HpyF3I CTNAG 4 cut(s) 228, 528, 671, 1047
Hsp92II CATG 9 cut(s) 56, 124, 178, 307, 334, 565, 736, 859, 1081
HspAI GCGC 2 cut(s) 748, 750
KroI GCCGGC 1 cut(s) 293
KroNI GCCGGC 1 cut(s) 295
Kzo9I GATC 1 cut(s) 300
LmnI GCTCC 3 cut(s) 469, 651, 736
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 3 cut(s) 294, 408, 931
MaeI CTAG 1 cut(s) 204
MalI GATC 1 cut(s) 302
MboI GATC 1 cut(s) 300
MboII GAAGA 8 cut(s) 396, 439, 578, 598, 700, 815, 950, 1146
MhlI GDGCHC 4 cut(s) 213, 656, 741, 838
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 4 cut(s) 25, 156, 169, 768
MluNI TGGCCA 1 cut(s) 257
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 513
Mox20I TGGCCA 1 cut(s) 257
MroNI GCCGGC 1 cut(s) 293
MscI TGGCCA 1 cut(s) 257
MseI TTAA 4 cut(s) 144, 216, 902, 1127
MslI CAYNNNNRTG 2 cut(s) 549, 792
Msp20I TGGCCA 1 cut(s) 257
MspI CCGG 3 cut(s) 294, 473, 792
MspR9I CCNGG 4 cut(s) 440, 467, 487, 728
Mva1269I GAATGC 1 cut(s) 583
MvaI CCWGG 4 cut(s) 440, 467, 487, 728
MvnI CGCG 1 cut(s) 750
MwoI GCNNNNNNNGC 8 cut(s) 217, 578, 660, 707, 745, 824, 833, 842
NaeI GCCGGC 1 cut(s) 295
NcoI CCATGG 2 cut(s) 174, 732
NdeII GATC 1 cut(s) 300
NgoMIV GCCGGC 1 cut(s) 293
NlaIII CATG 9 cut(s) 56, 124, 178, 307, 334, 565, 736, 859, 1081
NlaIV GGNNCC 1 cut(s) 471
NmeAIII GCCGAG 2 cut(s) 269, 853
NspI RCATGY 1 cut(s) 56
OliI CACNNNNGTG 1 cut(s) 792
PaeR7I CTCGAG 1 cut(s) 44
PagI TCATGA 1 cut(s) 1077
PauI GCGCGC 1 cut(s) 748
PciI ACATGT 1 cut(s) 52
PctI GAATGC 1 cut(s) 583
PdiI GCCGGC 1 cut(s) 295
PfeI GAWTC 1 cut(s) 912
PflMI CCANNNNNTGG 1 cut(s) 733
PinAI ACCGGT 1 cut(s) 791
PkrI GCNGC 1 cut(s) 310
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PscI ACATGT 1 cut(s) 52
PshAI GACNNNNGTC 1 cut(s) 14
PsiI TTATAA 1 cut(s) 1151
Psp124BI GAGCTC 2 cut(s) 213, 741
Psp6I CCWGG 4 cut(s) 438, 465, 485, 726
PspGI CCWGG 4 cut(s) 438, 465, 485, 726
PspN4I GGNNCC 1 cut(s) 471
PspPI GGNCC 3 cut(s) 279, 852, 984
PstI CTGCAG 1 cut(s) 1009
PteI GCGCGC 1 cut(s) 748
RsaI GTAC 3 cut(s) 243, 695, 783
RsaNI GTAC 3 cut(s) 242, 694, 782
RseI CAYNNNNRTG 2 cut(s) 549, 792
SacI GAGCTC 2 cut(s) 213, 741
SalI GTCGAC 2 cut(s) 232, 320
SaqAI TTAA 4 cut(s) 144, 216, 902, 1127
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 1 cut(s) 300
Sau96I GGNCC 3 cut(s) 279, 852, 984
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 4 cut(s) 440, 467, 487, 728
SduI GDGCHC 4 cut(s) 213, 656, 741, 838
SfaNI GCATC 3 cut(s) 294, 408, 931
SfcI CTRYAG 2 cut(s) 742, 1005
Sfr274I CTCGAG 1 cut(s) 44
SgrAI CRCCGGYG 1 cut(s) 791
SinI GGWCC 1 cut(s) 852
SlaI CTCGAG 1 cut(s) 44
SmiMI CAYNNNNRTG 2 cut(s) 549, 792
SmlI CTYRAG 4 cut(s) 44, 497, 812, 959
SmoI CTYRAG 4 cut(s) 44, 497, 812, 959
Sse9I AATT 4 cut(s) 25, 156, 169, 768
SsiI CCGC 3 cut(s) 5, 35, 661
SspI AATATT 1 cut(s) 114
SspMI CTAG 1 cut(s) 204
SstI GAGCTC 2 cut(s) 213, 741
StyD4I CCNGG 4 cut(s) 438, 465, 485, 726
StyI CCWWGG 3 cut(s) 69, 174, 732
TaaI ACNGT 6 cut(s) 89, 344, 644, 809, 898, 1065
TaqI TCGA 3 cut(s) 45, 233, 321
TasI AATT 4 cut(s) 25, 156, 169, 768
TatI WGTACW 1 cut(s) 693
TfiI GAWTC 1 cut(s) 912
Tru1I TTAA 4 cut(s) 144, 216, 902, 1127
Tru9I TTAA 4 cut(s) 144, 216, 902, 1127
TscAI CASTG 4 cut(s) 393, 901, 922, 1009
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 74, 590
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 4 cut(s) 393, 901, 922, 1009
Van91I CCANNNNNTGG 1 cut(s) 733
VpaK11BI GGWCC 1 cut(s) 852
XceI RCATGY 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 44
XmiI GTMKAC 2 cut(s) 233, 321
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.