Rmu_sc0008941.1_g000006

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008941.1
OG0000101
Physical Location & Seq
Reverse (-)
23161 .. 25556
2396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008941.1_g000006.1.cds

Sequence Viewer

Length: 1329 bp
atggtgagcgcgtcgtcgtcgccggcgcgattcagattgggatctaccttcccttcctcgcaattcatcagagaaaaaaagggaacagtcaaatcaatggcggatactagttcccccaattcttctgccgatgacctaaagaaacatgcaatgagggttttcaaggcagcgaccaaagactgtgcggacattgtctttgaaataaaatttgacatgattcgggactacgaatcccttcatcaatttgcagttgatttgttcaaatctatagcaaatactggcctggttgacttccccgaagagcttaaggctctcactgaggtggccatattgtccgatgtggctgtacacaccattgtcattggggaatacttcactgcccgaaagaccaaggctgctctcaaggcctttcagcacatgatagccactggtgtcgcccccaaatcctgcagttacagcttgctcatcacggcccttgcattagacttttctgatcccaattttcttgtgaatgccaagaagtactttatggaaatgttggttaagggattcaagcccaattctgggtcctacatgttagtgttggatgccatttcctgccgggagtcggaggggaaggccagggagttccttgaacagatcaaagccaaggggtttgtccctgcacgtaatctttatcaatttgaagtaggccaccccatagaagcgatgagtgcaatgaagatgtatgatgatctagaggacagcataactgatgaggacatgcaaaaggtcttctcagagtggcggaccaaccacgatctcctcaccaaagagtcgatcaagatgtacaaggctttgatagaggacgacaatgtagagcaggcaatggagatctttagggtcaatgctgagaggggcatacttcccattgttgtagtccacacctgtgttattgaagcctacttcagttttggcaagaccaaggatgctctggaggcatatcaggggatgttggctgctggggttgccccaaattgctacacctacactgttttaatcaagggacttactgctgaccccaacttcattggagatgccaagaagtgcttgcttgatatgatggacagggggatgaggcccaatgctgctacctacactgcagtgttagagggttttgcaaggaaggaggacaaggcagctgaggaggagggaaaagagctggtgaaggtgatgattcataaggggcatgggccaaaggctaaggctatgatggaggttttgaaaggcagcccaacacctttaataagaagggtcctggacatcaccttttccaagttgaaggcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

442

Amino Acids

49.18

Weight (kDa)

6.78

Isoelectric Point (pI)

29.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 11, 28
AciI CCGC 3 cut(s) 101, 185, 787
AclWI GGATC 2 cut(s) 49, 488
AcoI YGGCCR 1 cut(s) 324
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 931
AfaI GTAC 3 cut(s) 348, 524, 830
AfiI CCNNNNNNNGG 3 cut(s) 563, 564, 607
AflII CTTAAG 1 cut(s) 305
AflIII ACRYGT 1 cut(s) 573
AgsI TTSAA 9 cut(s) 163, 200, 262, 553, 635, 686, 938, 1264, 1321
AhlI ACTAGT 1 cut(s) 107
AjnI CCWGG 3 cut(s) 282, 620, 1296
AleI CACNNNNGTG 3 cut(s) 320, 927, 1142
AluBI AGCT 4 cut(s) 304, 459, 1181, 1201
AluI AGCT 4 cut(s) 304, 459, 1181, 1201
AlwI GGATC 2 cut(s) 49, 488
AoxI GGCC 8 cut(s) 280, 324, 405, 471, 618, 691, 1118, 1232
ApeKI GCWGC 6 cut(s) 167, 395, 998, 1127, 1178, 1269
ApoI RAATTY 1 cut(s) 206
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
Asp700I GAANNNNTTC 1 cut(s) 234
AspLEI GCGC 2 cut(s) 11, 28
AspS9I GGNCC 6 cut(s) 472, 567, 789, 1119, 1232, 1294
AsuC2I CCSGG 1 cut(s) 602
AsuHPI GGTGA 5 cut(s) 16, 799, 1216, 1222, 1297
AvaII GGWCC 3 cut(s) 567, 789, 1294
BalI TGGCCA 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 766
BbvCI CCTCAGC 1 cut(s) 1182
BbvI GCAGC 6 cut(s) 179, 382, 985, 1114, 1190, 1281
BccI CCATC 2 cut(s) 1096, 1246
BceAI ACGGC 1 cut(s) 486
BciT130I CCWGG 3 cut(s) 284, 622, 1298
BciVI GTATCC 1 cut(s) 97
BcnI CCSGG 1 cut(s) 602
BcuI ACTAGT 1 cut(s) 107
BfaI CTAG 2 cut(s) 108, 737
BfmI CTRYAG 3 cut(s) 267, 448, 1140
BfrI CTTAAG 1 cut(s) 305
BfuI GTATCC 1 cut(s) 97
BglII AGATCT 1 cut(s) 873
BisI GCNGC 6 cut(s) 168, 396, 999, 1128, 1179, 1270
BlsI GCNGC 6 cut(s) 169, 397, 1000, 1129, 1180, 1271
BmcAI AGTACT 1 cut(s) 524
Bme1390I CCNGG 4 cut(s) 284, 602, 622, 1298
Bme18I GGWCC 3 cut(s) 567, 789, 1294
BmgT120I GGNCC 6 cut(s) 472, 567, 789, 1119, 1232, 1294
BmiI GGNNCC 2 cut(s) 568, 1295
BmrFI CCNGG 4 cut(s) 284, 602, 622, 1298
BmsI GCATC 3 cut(s) 577, 958, 1066
BpiI GAAGAC 1 cut(s) 766
BpmI CTGGAG 1 cut(s) 995
Bpu10I CCTNAGC 2 cut(s) 1182, 1242
BpuEI CTTGAG 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 602
BsaAI YACGTR 1 cut(s) 668
BsaBI GATNNNNATC 1 cut(s) 40
BsaJI CCNNGG 4 cut(s) 390, 621, 648, 963
Bsc4I CCNNNNNNNGG 3 cut(s) 563, 564, 607
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 2 cut(s) 283, 433
Bse3DI GCAATG 3 cut(s) 156, 723, 873
Bse8I GATNNNNATC 1 cut(s) 40
BseBI CCWGG 3 cut(s) 284, 622, 1298
BseDI CCNNGG 4 cut(s) 390, 621, 648, 963
BseGI GGATG 4 cut(s) 592, 973, 996, 1119
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 3 cut(s) 563, 564, 607
BseMI GCAATG 3 cut(s) 156, 723, 873
BseMII CTCAG 4 cut(s) 309, 792, 882, 1173
BseNI ACTGG 2 cut(s) 283, 433
BseRI GAGGAG 3 cut(s) 794, 1199, 1202
BseXI GCAGC 6 cut(s) 179, 382, 985, 1114, 1190, 1281
BseYI CCCAGC 1 cut(s) 1001
BsgI GTGCAG 1 cut(s) 648
Bsh1236I CGCG 2 cut(s) 11, 28
BshFI GGCC 8 cut(s) 282, 326, 407, 473, 620, 693, 1120, 1234
BsiSI CCGG 2 cut(s) 23, 601
BslFI GGGAC 3 cut(s) 236, 644, 1059
BslI CCNNNNNNNGG 3 cut(s) 563, 564, 607
BsmFI GGGAC 3 cut(s) 236, 644, 1059
BsmI GAATGC 1 cut(s) 517
BsnI GGCC 8 cut(s) 282, 326, 407, 473, 620, 693, 1120, 1234
Bsp1407I TGTACA 2 cut(s) 346, 828
Bsp143I GATC 7 cut(s) 41, 493, 639, 733, 799, 819, 873
BspACI CCGC 3 cut(s) 101, 185, 787
BspANI GGCC 8 cut(s) 282, 326, 407, 473, 620, 693, 1120, 1234
BspCNI CTCAG 4 cut(s) 310, 791, 883, 1174
BspFNI CGCG 2 cut(s) 11, 28
BspLI GGNNCC 2 cut(s) 568, 1295
BspMAI CTGCAG 2 cut(s) 452, 1144
BspPI GGATC 2 cut(s) 49, 488
BspQI GCTCTTC 1 cut(s) 294
BspTI CTTAAG 1 cut(s) 305
BsrDI GCAATG 3 cut(s) 156, 723, 873
BsrFI RCCGGY 1 cut(s) 22
BsrGI TGTACA 2 cut(s) 346, 828
BsrI ACTGG 2 cut(s) 283, 433
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 4 cut(s) 390, 621, 648, 963
BssMI GATC 7 cut(s) 41, 493, 639, 733, 799, 819, 873
BssT1I CCWWGG 3 cut(s) 390, 648, 963
Bst2UI CCWGG 3 cut(s) 284, 622, 1298
Bst4CI ACNGT 3 cut(s) 88, 182, 1033
Bst6I CTCTTC 1 cut(s) 294
BstAFI CTTAAG 1 cut(s) 305
BstAUI TGTACA 2 cut(s) 346, 828
BstBAI YACGTR 1 cut(s) 668
BstC8I GCNNGC 4 cut(s) 24, 461, 864, 1091
BstDEI CTNAG 5 cut(s) 318, 778, 891, 1182, 1242
BstF5I GGATG 4 cut(s) 592, 973, 996, 1119
BstFNI CGCG 2 cut(s) 11, 28
BstHHI GCGC 2 cut(s) 11, 28
BstKTI GATC 7 cut(s) 44, 496, 642, 736, 802, 822, 876
BstMBI GATC 7 cut(s) 41, 493, 639, 733, 799, 819, 873
BstMWI GCNNNNNNNGC 5 cut(s) 404, 456, 713, 977, 1007
BstNI CCWGG 3 cut(s) 284, 622, 1298
BstNSI RCATGY 3 cut(s) 149, 577, 766
BstSCI CCNGG 4 cut(s) 282, 600, 620, 1296
BstSFI CTRYAG 3 cut(s) 267, 448, 1140
BstUI CGCG 2 cut(s) 11, 28
BstV1I GCAGC 6 cut(s) 179, 382, 985, 1114, 1190, 1281
BstV2I GAAGAC 1 cut(s) 766
BstX2I RGATCY 2 cut(s) 41, 873
BstYI RGATCY 2 cut(s) 41, 873
BsuI GTATCC 1 cut(s) 97
BsuRI GGCC 8 cut(s) 282, 326, 407, 473, 620, 693, 1120, 1234
BtgZI GCGATG 1 cut(s) 722
BtsCI GGATG 4 cut(s) 592, 973, 996, 1119
BtsI GCAGTG 3 cut(s) 375, 1137, 1149
BtsIMutI CAGTG 6 cut(s) 315, 375, 426, 1029, 1137, 1149
Cac8I GCNNGC 4 cut(s) 24, 461, 864, 1091
CfoI GCGC 2 cut(s) 11, 28
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 6 cut(s) 472, 567, 789, 1119, 1232, 1294
Csp6I GTAC 3 cut(s) 347, 523, 829
CviAII CATG 6 cut(s) 146, 214, 418, 574, 763, 1229
CviQI GTAC 3 cut(s) 347, 523, 829
DdeI CTNAG 5 cut(s) 318, 778, 891, 1182, 1242
DpnI GATC 7 cut(s) 43, 495, 641, 735, 801, 821, 875
DpnII GATC 7 cut(s) 41, 493, 639, 733, 799, 819, 873
EaeI YGGCCR 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
EciI GGCGGA 2 cut(s) 116, 802
Eco130I CCWWGG 3 cut(s) 390, 648, 963
Eco147I AGGCCT 1 cut(s) 407
Eco47I GGWCC 3 cut(s) 567, 789, 1294
Eco57I CTGAAG 1 cut(s) 931
EcoO109I RGGNCCY 2 cut(s) 567, 1294
EcoRII CCWGG 3 cut(s) 282, 620, 1296
EcoT14I CCWWGG 3 cut(s) 390, 648, 963
ErhI CCWWGG 3 cut(s) 390, 648, 963
FaeI CATG 6 cut(s) 149, 217, 421, 577, 766, 1232
FalI AAGNNNNNCTT 4 cut(s) 509, 541, 1073, 1105
FaqI GGGAC 3 cut(s) 236, 644, 1059
FatI CATG 6 cut(s) 145, 213, 417, 573, 762, 1228
Fnu4HI GCNGC 6 cut(s) 168, 396, 999, 1128, 1179, 1270
FokI GGATG 4 cut(s) 599, 980, 1003, 1126
Fsp4HI GCNGC 6 cut(s) 168, 396, 999, 1128, 1179, 1270
FspBI CTAG 2 cut(s) 108, 737
GlaI GCGC 2 cut(s) 10, 27
GluI GCNGC 6 cut(s) 168, 396, 999, 1128, 1179, 1270
GsaI CCCAGC 1 cut(s) 1005
GsuI CTGGAG 1 cut(s) 995
HaeIII GGCC 8 cut(s) 282, 326, 407, 473, 620, 693, 1120, 1234
HapII CCGG 2 cut(s) 23, 601
HhaI GCGC 2 cut(s) 11, 28
Hin1II CATG 6 cut(s) 149, 217, 421, 577, 766, 1232
Hin6I GCGC 2 cut(s) 9, 26
HinP1I GCGC 2 cut(s) 9, 26
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 7 cut(s) 30, 217, 230, 549, 605, 815, 1216
HpaII CCGG 2 cut(s) 23, 601
HphI GGTGA 5 cut(s) 16, 799, 1216, 1222, 1297
Hpy166II GTNNAC 3 cut(s) 289, 349, 922
Hpy188I TCNGA 6 cut(s) 35, 71, 337, 493, 610, 781
Hpy188III TCNNGA 4 cut(s) 221, 737, 823, 974
Hpy8I GTNNAC 3 cut(s) 289, 349, 922
Hpy99I CGWCG 3 cut(s) 16, 19, 22
HpyAV CCTTC 8 cut(s) 58, 63, 245, 610, 1159, 1201, 1284, 1315
HpyCH4III ACNGT 3 cut(s) 88, 182, 1033
HpyCH4IV ACGT 1 cut(s) 667
HpyCH4V TGCA 9 cut(s) 149, 248, 450, 479, 665, 716, 766, 1142, 1160
HpyF10VI GCNNNNNNNGC 5 cut(s) 404, 456, 713, 977, 1007
HpyF3I CTNAG 5 cut(s) 318, 778, 891, 1182, 1242
HpySE526I ACGT 1 cut(s) 667
Hsp92II CATG 6 cut(s) 149, 217, 421, 577, 766, 1232
HspAI GCGC 2 cut(s) 9, 26
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
Kzo9I GATC 7 cut(s) 41, 493, 639, 733, 799, 819, 873
LguI GCTCTTC 1 cut(s) 294
Lsp1109I GCAGC 6 cut(s) 179, 382, 985, 1114, 1190, 1281
LweI GCATC 3 cut(s) 577, 958, 1066
MaeI CTAG 2 cut(s) 108, 737
MaeII ACGT 1 cut(s) 667
MaeIII GTNAC 1 cut(s) 452
MalI GATC 7 cut(s) 43, 495, 641, 735, 801, 821, 875
MboI GATC 7 cut(s) 41, 493, 639, 733, 799, 819, 873
MboII GAAGA 4 cut(s) 114, 311, 733, 766
MflI RGATCY 2 cut(s) 41, 873
MlsI TGGCCA 1 cut(s) 326
MluCI AATT 8 cut(s) 62, 118, 206, 242, 499, 559, 680, 1015
MluNI TGGCCA 1 cut(s) 326
MlyI GAGTC 2 cut(s) 614, 824
MmeI TCCRAC 2 cut(s) 564, 588
Mox20I TGGCCA 1 cut(s) 326
MreI CGCCGGCG 1 cut(s) 22
MroNI GCCGGC 1 cut(s) 22
MroXI GAANNNNTTC 1 cut(s) 234
MscI TGGCCA 1 cut(s) 326
MseI TTAA 4 cut(s) 306, 543, 1037, 1283
MslI CAYNNNNRTG 4 cut(s) 320, 578, 927, 1142
Msp20I TGGCCA 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 1181
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 2 cut(s) 23, 601
MspR9I CCNGG 4 cut(s) 284, 602, 622, 1298
Mva1269I GAATGC 1 cut(s) 517
MvaI CCWGG 3 cut(s) 284, 622, 1298
MvnI CGCG 2 cut(s) 11, 28
MwoI GCNNNNNNNGC 5 cut(s) 404, 456, 713, 977, 1007
NaeI GCCGGC 1 cut(s) 24
NciI CCSGG 1 cut(s) 602
NdeII GATC 7 cut(s) 41, 493, 639, 733, 799, 819, 873
NgoMIV GCCGGC 1 cut(s) 22
NlaIII CATG 6 cut(s) 149, 217, 421, 577, 766, 1232
NlaIV GGNNCC 2 cut(s) 568, 1295
NspI RCATGY 3 cut(s) 149, 577, 766
OliI CACNNNNGTG 3 cut(s) 320, 927, 1142
PceI AGGCCT 1 cut(s) 407
PciI ACATGT 1 cut(s) 573
PciSI GCTCTTC 1 cut(s) 294
PctI GAATGC 1 cut(s) 517
PdiI GCCGGC 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 5 cut(s) 30, 217, 230, 549, 1216
PflFI GACNNNGTC 1 cut(s) 191
PfoI TCCNGGA 1 cut(s) 1296
PkrI GCNGC 6 cut(s) 169, 397, 1000, 1129, 1180, 1271
PleI GAGTC 2 cut(s) 613, 823
PpsI GAGTC 2 cut(s) 613, 823
Ppu21I YACGTR 1 cut(s) 668
PpuMI RGGWCCY 2 cut(s) 567, 1294
PscI ACATGT 1 cut(s) 573
Psp5II RGGWCCY 2 cut(s) 567, 1294
Psp6I CCWGG 3 cut(s) 282, 620, 1296
PspFI CCCAGC 1 cut(s) 1001
PspGI CCWGG 3 cut(s) 282, 620, 1296
PspN4I GGNNCC 2 cut(s) 568, 1295
PspPI GGNCC 6 cut(s) 472, 567, 789, 1119, 1232, 1294
PspPPI RGGWCCY 2 cut(s) 567, 1294
PstI CTGCAG 2 cut(s) 452, 1144
PsuI RGATCY 2 cut(s) 41, 873
PsyI GACNNNGTC 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 1181
RsaI GTAC 3 cut(s) 348, 524, 830
RsaNI GTAC 3 cut(s) 347, 523, 829
RseI CAYNNNNRTG 4 cut(s) 320, 578, 927, 1142
SapI GCTCTTC 1 cut(s) 294
SaqAI TTAA 4 cut(s) 306, 543, 1037, 1283
SatI GCNGC 6 cut(s) 168, 396, 999, 1128, 1179, 1270
Sau3AI GATC 7 cut(s) 41, 493, 639, 733, 799, 819, 873
Sau96I GGNCC 6 cut(s) 472, 567, 789, 1119, 1232, 1294
ScaI AGTACT 1 cut(s) 524
SchI GAGTC 2 cut(s) 614, 824
ScrFI CCNGG 4 cut(s) 284, 602, 622, 1298
SfaNI GCATC 3 cut(s) 577, 958, 1066
SfcI CTRYAG 3 cut(s) 267, 448, 1140
SgrAI CRCCGGYG 1 cut(s) 22
SinI GGWCC 3 cut(s) 567, 789, 1294
SmiMI CAYNNNNRTG 4 cut(s) 320, 578, 927, 1142
SmlI CTYRAG 2 cut(s) 305, 401
SmoI CTYRAG 2 cut(s) 305, 401
SpeI ACTAGT 1 cut(s) 107
Sse9I AATT 8 cut(s) 62, 118, 206, 242, 499, 559, 680, 1015
SseBI AGGCCT 1 cut(s) 407
SsiI CCGC 3 cut(s) 101, 185, 787
SspMI CTAG 2 cut(s) 108, 737
StuI AGGCCT 1 cut(s) 407
StyD4I CCNGG 4 cut(s) 282, 600, 620, 1296
StyI CCWWGG 3 cut(s) 390, 648, 963
TaaI ACNGT 3 cut(s) 88, 182, 1033
TaiI ACGT 1 cut(s) 670
TaqI TCGA 1 cut(s) 818
TasI AATT 8 cut(s) 62, 118, 206, 242, 499, 559, 680, 1015
TatI WGTACW 3 cut(s) 346, 522, 828
TfiI GAWTC 5 cut(s) 30, 217, 230, 549, 1216
Tru1I TTAA 4 cut(s) 306, 543, 1037, 1283
Tru9I TTAA 4 cut(s) 306, 543, 1037, 1283
TscAI CASTG 6 cut(s) 322, 382, 433, 1036, 1144, 1149
TseI GCWGC 6 cut(s) 167, 395, 998, 1127, 1178, 1269
TspDTI ATGAA 5 cut(s) 55, 227, 734, 1057, 1208
TspRI CASTG 6 cut(s) 322, 382, 433, 1036, 1144, 1149
Tth111I GACNNNGTC 1 cut(s) 191
Vha464I CTTAAG 1 cut(s) 305
VpaK11BI GGWCC 3 cut(s) 567, 789, 1294
XapI RAATTY 1 cut(s) 206
XbaI TCTAGA 1 cut(s) 736
XceI RCATGY 3 cut(s) 149, 577, 766
XcmI CCANNNNNNNNNTGG 1 cut(s) 970
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 2 cut(s) 108, 737
ZrmI AGTACT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.