Rh7DG438200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000101
Physical Location & Seq
Forward (+)
62368966 .. 62374732
5767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG438200.1

Sequence Viewer

Length: 1149 bp
ATGGAGGACACTAGTTTCCCCAATTCTTGTGCCGATGGCCTCAAGAAACACGTAATGAAGGTTTTCGAGGAGGCCACCAAAGACTGTGAGGACAAGGAAGTGAAAGAAATATTTGACTCCATTGGGGACTATGACGACCTTAATGAATTTGGGATCCAAATGTTCAATTTGTTGGCAAATTTCGGCCAGGCTAATGAAGCCAAAGAGCTGTTTAGGCCTCTCTCTGTGCCGGCCGTACTGCCGGACGTGGCTGTCCTCACAATGGTCATTCTGGTCTACACCCATGCCGGAAAGGCCAAGGCTGCTCTCAAGGCCTATCAGCACATGATAGCCACTGGTGTCACCCCCACCTCCGCTACTTACAATGCACTCATCACAGCATTCGCAGAAGACTCATCTTCTGGTTCCAATTTTGTTGGCTATGCTAAGAAGGATTTTTTGGAAATGTTGGATAAGGGGATGAAGCCCAATCCTGGTTGCTATATATCTGTGTTTGACGCCATTGCTTGTCGTGAGTCAGTGGACAAGGCCAAGGAGTTCCTTGAGCAGATAAAAGCAAAGGGGTTTACTCCCGTCAACAATCTTTATCGCTTTGAAGAACGGCACCTAACAGAAGCAGTCAAGGCAATCAGGATGTACAATGATCTCGTCAACAACACCATCGACAAGGATTTGAGAAAGGCCTTCTGCAAGTGGCGCATCCGTGGCCTCAAGAAAGAAGCATTGAGGATGTTCCTTGCTTTGGTAGATGATGGAGACGTAGACGAGGTCAAGGAGATTGTTAGGCCCACCCTTGAGACAGGCGTAGAATCCATGGTTGTAATACACACCTCCATTATTAAGGCCTACCTCGATGCTGGAAAGACCAAGGTAGCTCTCAAGGCCTACCGTGGCATGTTAGCTGCTGGGGTTGCCCCCAACTCCTACACTTACACTGTTTTAATCAAGGGACTCACTGCTGACCCCAACTTTTTTGAAGTTGCCAAGAAGTGCTTGCTTGAGATGATGGACACGGGGAGGCGGTCCAATGCTGCTAGTTATACTGTGGTGATAGAGGCCTTTGCAAGGCAGGAGGACAAGGCAACTGAGGAGGAGGGCAAATATTTGGTGGAAGTGATGATGAAGCAATCATCAGAGAAAGGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

382

Amino Acids

42.55

Weight (kDa)

5.63

Isoelectric Point (pI)

26.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 81 - 129 2.1e-08 PPR repeat family
TPR_24 PF23276 270 - 360 1.9e-08 Fungal tetratrico peptide repeats
PPR_2 PF13041 273 - 318 2.7e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AccB1I GGYRCC 1 cut(s) 603
AccI GTMKAC 2 cut(s) 276, 762
AciI CCGC 2 cut(s) 354, 1021
AclWI GGATC 2 cut(s) 148, 161
AcoI YGGCCR 2 cut(s) 184, 231
AcsI RAATTY 2 cut(s) 146, 178
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 2 cut(s) 237, 638
AfiI CCNNNNNNNGG 4 cut(s) 262, 473, 742, 1065
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 3 cut(s) 166, 596, 977
AhlI ACTAGT 1 cut(s) 11
AjiI CACGTC 1 cut(s) 247
AjnI CCWGG 2 cut(s) 186, 472
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
AluBI AGCT 3 cut(s) 208, 875, 902
AluI AGCT 3 cut(s) 208, 875, 902
Alw26I GTCTC 2 cut(s) 750, 791
AlwI GGATC 2 cut(s) 148, 161
ApeKI GCWGC 3 cut(s) 302, 902, 1031
ApoI RAATTY 2 cut(s) 146, 178
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 1 cut(s) 699
AspS9I GGNCC 2 cut(s) 786, 1023
AsuHPI GGTGA 2 cut(s) 334, 1060
AvaII GGWCC 1 cut(s) 1023
BamHI GGATCC 1 cut(s) 153
BanI GGYRCC 1 cut(s) 603
BbsI GAAGAC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 289, 889, 1018
BccI CCATC 4 cut(s) 29, 668, 746, 1000
BceAI ACGGC 2 cut(s) 218, 617
BciT130I CCWGG 2 cut(s) 188, 474
BcoDI GTCTC 2 cut(s) 750, 791
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 1035
BglI GCCNNNNNGGC 1 cut(s) 293
BisI GCNGC 3 cut(s) 303, 903, 1032
BlsI GCNGC 3 cut(s) 304, 904, 1033
Bme1390I CCNGG 2 cut(s) 188, 474
Bme18I GGWCC 1 cut(s) 1023
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 2 cut(s) 786, 1023
BmiI GGNNCC 3 cut(s) 155, 406, 605
BmrFI CCNGG 2 cut(s) 188, 474
BmsI GCATC 2 cut(s) 708, 844
BpiI GAAGAC 1 cut(s) 396
BpuEI CTTGAG 7 cut(s) 26, 293, 563, 695, 815, 863, 1019
BsaAI YACGTR 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 498
BsaJI CCNNGG 6 cut(s) 297, 531, 703, 813, 867, 889
Bsc4I CCNNNNNNNGG 4 cut(s) 262, 473, 742, 1065
Bse118I RCCGGY 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 340
Bse3DI GCAATG 1 cut(s) 501
BseBI CCWGG 2 cut(s) 188, 474
BseDI CCNNGG 6 cut(s) 297, 531, 703, 813, 867, 889
BseGI GGATG 4 cut(s) 465, 639, 699, 735
BseLI CCNNNNNNNGG 4 cut(s) 262, 473, 742, 1065
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 1 cut(s) 1077
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 3 cut(s) 83, 1103, 1106
BseX3I CGGCCG 1 cut(s) 231
BseXI GCAGC 3 cut(s) 289, 889, 1018
BseYI CCCAGC 1 cut(s) 905
Bsh1285I CGRYCG 1 cut(s) 234
BshNI GGYRCC 1 cut(s) 603
BsiEI CGRYCG 1 cut(s) 234
BsiSI CCGG 3 cut(s) 230, 242, 288
BslFI GGGAC 2 cut(s) 140, 963
BslI CCNNNNNNNGG 4 cut(s) 262, 473, 742, 1065
BsmAI GTCTC 2 cut(s) 750, 791
BsmBI CGTCTC 1 cut(s) 750
BsmFI GGGAC 2 cut(s) 140, 963
BsmI GAATGC 1 cut(s) 380
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 2 cut(s) 153, 643
Bsp19I CCATGG 1 cut(s) 813
BspACI CCGC 2 cut(s) 354, 1021
BspCNI CTCAG 1 cut(s) 1078
BspLI GGNNCC 3 cut(s) 155, 406, 605
BspPI GGATC 2 cut(s) 148, 161
BspT107I GGYRCC 1 cut(s) 603
BsrDI GCAATG 1 cut(s) 501
BsrFI RCCGGY 1 cut(s) 229
BsrGI TGTACA 1 cut(s) 636
BsrI ACTGG 1 cut(s) 340
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 6 cut(s) 297, 531, 703, 813, 867, 889
BssMI GATC 2 cut(s) 153, 643
BssNI GRCGYC 1 cut(s) 498
BssT1I CCWWGG 4 cut(s) 297, 531, 813, 867
Bst2UI CCWGG 2 cut(s) 188, 474
Bst4CI ACNGT 4 cut(s) 86, 890, 937, 1045
BstACI GRCGYC 1 cut(s) 498
BstAUI TGTACA 1 cut(s) 636
BstBAI YACGTR 1 cut(s) 52
BstC8I GCNNGC 2 cut(s) 231, 995
BstDEI CTNAG 2 cut(s) 426, 1086
BstDSI CCRYGG 3 cut(s) 703, 813, 889
BstENI CCTNNNNNAGG 1 cut(s) 1063
BstF5I GGATG 4 cut(s) 465, 639, 699, 735
BstHHI GCGC 1 cut(s) 699
BstKTI GATC 2 cut(s) 156, 646
BstMAI GTCTC 2 cut(s) 750, 791
BstMBI GATC 2 cut(s) 153, 643
BstMCI CGRYCG 1 cut(s) 234
BstNI CCWGG 2 cut(s) 188, 474
BstNSI RCATGY 1 cut(s) 898
BstSCI CCNGG 2 cut(s) 186, 472
BstV1I GCAGC 3 cut(s) 289, 889, 1018
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BstZI CGGCCG 1 cut(s) 231
BtgI CCRYGG 3 cut(s) 703, 813, 889
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 4 cut(s) 465, 639, 699, 735
BtsI GCAGTG 1 cut(s) 954
BtsIMutI CAGTG 4 cut(s) 333, 525, 933, 954
Cac8I GCNNGC 2 cut(s) 231, 995
CfoI GCGC 1 cut(s) 699
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 2 cut(s) 786, 1023
CseI GACGC 1 cut(s) 506
Csp6I GTAC 2 cut(s) 236, 637
CviAII CATG 4 cut(s) 284, 325, 814, 895
CviQI GTAC 2 cut(s) 236, 637
DdeI CTNAG 2 cut(s) 426, 1086
DpnI GATC 2 cut(s) 155, 645
DpnII GATC 2 cut(s) 153, 643
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 2 cut(s) 184, 231
EagI CGGCCG 1 cut(s) 231
EclXI CGGCCG 1 cut(s) 231
Eco130I CCWWGG 4 cut(s) 297, 531, 813, 867
Eco147I AGGCCT 6 cut(s) 217, 314, 683, 845, 884, 1058
Eco47I GGWCC 1 cut(s) 1023
Eco52I CGGCCG 1 cut(s) 231
EcoNI CCTNNNNNAGG 1 cut(s) 1063
EcoRII CCWGG 2 cut(s) 186, 472
EcoT14I CCWWGG 4 cut(s) 297, 531, 813, 867
ErhI CCWWGG 4 cut(s) 297, 531, 813, 867
Esp3I CGTCTC 1 cut(s) 750
FaeI CATG 4 cut(s) 287, 328, 817, 898
FaiI YATR 9 cut(s) 132, 285, 326, 423, 483, 485, 815, 896, 1041
FalI AAGNNNNNCTT 2 cut(s) 977, 1009
FaqI GGGAC 2 cut(s) 140, 963
FatI CATG 4 cut(s) 283, 324, 813, 894
FblI GTMKAC 2 cut(s) 276, 762
Fnu4HI GCNGC 3 cut(s) 303, 903, 1032
FokI GGATG 4 cut(s) 472, 646, 686, 742
Fsp4HI GCNGC 3 cut(s) 303, 903, 1032
FspBI CTAG 2 cut(s) 12, 1035
GlaI GCGC 1 cut(s) 698
GluI GCNGC 3 cut(s) 303, 903, 1032
GsaI CCCAGC 1 cut(s) 909
HapII CCGG 3 cut(s) 230, 242, 288
HgaI GACGC 1 cut(s) 506
HhaI GCGC 1 cut(s) 699
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 4 cut(s) 287, 328, 817, 898
Hin6I GCGC 1 cut(s) 697
HinP1I GCGC 1 cut(s) 697
HincII GTYRAC 2 cut(s) 577, 652
HindII GTYRAC 2 cut(s) 577, 652
HinfI GANTC 5 cut(s) 116, 392, 515, 809, 951
HpaII CCGG 3 cut(s) 230, 242, 288
HphI GGTGA 2 cut(s) 334, 1060
Hpy166II GTNNAC 6 cut(s) 277, 523, 567, 577, 652, 763
Hpy188I TCNGA 1 cut(s) 1135
Hpy188III TCNNGA 4 cut(s) 43, 512, 631, 712
Hpy8I GTNNAC 6 cut(s) 277, 523, 567, 577, 652, 763
HpyAV CCTTC 3 cut(s) 52, 424, 694
HpyCH4III ACNGT 4 cut(s) 86, 890, 937, 1045
HpyCH4IV ACGT 3 cut(s) 51, 246, 759
HpyCH4V TGCA 3 cut(s) 368, 690, 1064
HpyF3I CTNAG 2 cut(s) 426, 1086
HpySE526I ACGT 3 cut(s) 51, 246, 759
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 4 cut(s) 287, 328, 817, 898
HspAI GCGC 1 cut(s) 697
KroI GCCGGC 1 cut(s) 229
KroNI GCCGGC 1 cut(s) 231
Kzo9I GATC 2 cut(s) 153, 643
Lsp1109I GCAGC 3 cut(s) 289, 889, 1018
LweI GCATC 2 cut(s) 708, 844
MaeI CTAG 2 cut(s) 12, 1035
MaeII ACGT 3 cut(s) 51, 246, 759
MaeIII GTNAC 1 cut(s) 340
MalI GATC 2 cut(s) 155, 645
MboI GATC 2 cut(s) 153, 643
MboII GAAGA 3 cut(s) 390, 401, 608
MflI RGATCY 1 cut(s) 153
MluCI AATT 5 cut(s) 22, 146, 166, 178, 409
MlyI GAGTC 4 cut(s) 110, 386, 524, 945
MmeI TCCRAC 1 cut(s) 429
MroNI GCCGGC 1 cut(s) 229
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 3 cut(s) 141, 840, 941
MspI CCGG 3 cut(s) 230, 242, 288
MspR9I CCNGG 2 cut(s) 188, 474
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 2 cut(s) 188, 474
NaeI GCCGGC 1 cut(s) 231
NcoI CCATGG 1 cut(s) 813
NdeII GATC 2 cut(s) 153, 643
NgoMIV GCCGGC 1 cut(s) 229
NlaIII CATG 4 cut(s) 287, 328, 817, 898
NlaIV GGNNCC 3 cut(s) 155, 406, 605
NmuCI GTSAC 1 cut(s) 340
NspI RCATGY 1 cut(s) 898
PceI AGGCCT 6 cut(s) 217, 314, 683, 845, 884, 1058
PctI GAATGC 1 cut(s) 380
PdiI GCCGGC 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 809
PflFI GACNNNGTC 1 cut(s) 767
PkrI GCNGC 3 cut(s) 304, 904, 1033
PleI GAGTC 4 cut(s) 110, 386, 523, 945
PpsI GAGTC 4 cut(s) 110, 386, 523, 945
Ppu21I YACGTR 1 cut(s) 52
Psp6I CCWGG 2 cut(s) 186, 472
PspFI CCCAGC 1 cut(s) 905
PspGI CCWGG 2 cut(s) 186, 472
PspN4I GGNNCC 3 cut(s) 155, 406, 605
PspPI GGNCC 2 cut(s) 786, 1023
PsuI RGATCY 1 cut(s) 153
PsyI GACNNNGTC 1 cut(s) 767
RsaI GTAC 2 cut(s) 237, 638
RsaNI GTAC 2 cut(s) 236, 637
SaqAI TTAA 3 cut(s) 141, 840, 941
SatI GCNGC 3 cut(s) 303, 903, 1032
Sau3AI GATC 2 cut(s) 153, 643
Sau96I GGNCC 2 cut(s) 786, 1023
SchI GAGTC 4 cut(s) 110, 386, 524, 945
ScrFI CCNGG 2 cut(s) 188, 474
SfaNI GCATC 2 cut(s) 708, 844
SinI GGWCC 1 cut(s) 1023
SmlI CTYRAG 7 cut(s) 41, 308, 542, 710, 794, 878, 998
SmoI CTYRAG 7 cut(s) 41, 308, 542, 710, 794, 878, 998
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 5 cut(s) 22, 146, 166, 178, 409
SseBI AGGCCT 6 cut(s) 217, 314, 683, 845, 884, 1058
SsiI CCGC 2 cut(s) 354, 1021
SspI AATATT 2 cut(s) 111, 1103
SspMI CTAG 2 cut(s) 12, 1035
StuI AGGCCT 6 cut(s) 217, 314, 683, 845, 884, 1058
StyD4I CCNGG 2 cut(s) 186, 472
StyI CCWWGG 4 cut(s) 297, 531, 813, 867
TaaI ACNGT 4 cut(s) 86, 890, 937, 1045
TaiI ACGT 3 cut(s) 54, 249, 762
TaqI TCGA 3 cut(s) 66, 663, 852
TasI AATT 5 cut(s) 22, 146, 166, 178, 409
TatI WGTACW 1 cut(s) 636
TfiI GAWTC 1 cut(s) 809
Tru1I TTAA 3 cut(s) 141, 840, 941
Tru9I TTAA 3 cut(s) 141, 840, 941
TscAI CASTG 4 cut(s) 340, 525, 940, 961
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 3 cut(s) 302, 902, 1031
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 5 cut(s) 71, 159, 210, 476, 1136
TspGWI ACGGA 1 cut(s) 692
TspRI CASTG 4 cut(s) 340, 525, 940, 961
Tth111I GACNNNGTC 1 cut(s) 767
VpaK11BI GGWCC 1 cut(s) 1023
XagI CCTNNNNNAGG 1 cut(s) 1063
XapI RAATTY 2 cut(s) 146, 178
XceI RCATGY 1 cut(s) 898
XmiI GTMKAC 2 cut(s) 276, 762
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 2 cut(s) 12, 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.