Rroxscaffold_3G00225610

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000101
Physical Location & Seq
Reverse (-)
8904691 .. 8905920
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225610.1

Sequence Viewer

Length: 1230 bp
ATGGCGGAAGCTAGTTCCCCAAATTACGATGACCTCAAGAACCATGTAATGAAGGTTTTTGAGGATGCGACCAAAGACTGTGAGGACAAGGACATGAAAAAAGTATTTGATTCGATTGGGGACTACGACTCCTTTAACAATTATGCGATTGAAATGTTCGGTGCTATGGAAAACTTGGGCCTCGGTGATGAAGCCAGAGAGCTGTTCAAGCCTCTCTCTGACCGAGCCATACTGCGGGATGTGGCTATCCACACTGTGGTCATTCGGGCATACGCTGTTGCTGGCAAGACCAAGGCTGTTCTCAAGGCCTACCAGCACATGATAGCCACTGGTATCGCTCCCTCATCCCTCACTTACACCATACTCATCAATGCACTTGTAGTAGACTATTCTGATTACAATTTTGTTGGCTATGTGAAGAACTATATACTAGAAATGTTGGATAAGGGGATGAAGCCTCATCCTATATGCTATTTGGGTCTGTTTGGAGTCCTTGGCTGCCGGGAGTCGGTGGAGAAGGCTACTGAGTTCCTTGTGCTGATAAATGCCAAGGGGTTGTGCCCCGAGTCCAATTATTTTAACTTTGAAGAAGGCCACTTCAAAAAGGCAATGAAGGCAATCAAGGTGTACACTAATGTCAGCAATATAACAACTGACAAGGATGCGCAAAAGGTGTTCCGGAAGTGGCGCACCAACGCCCCTGGCCTCAAGAAAGAGTTACTGAAGATGATCAATGCTCTGGTGAAGGATGGCAACCTAGATGAATCCATGGAGATGTATAGAGACATCATTGAGACAGGAAGAGAACCTTTTGTCCTACTCCACACCTGTGTTATTAAAGCCTATCTCAAGTCTGGCAAGACCAAGAGTGCTTTTGAGCTGTACCAGGGTATGTTAGCTGCAGGTGTTTCCCCCAACTCATACACTTGCACAGTTTTAATCAAGGGACTCGCTGCTGACCCCAACTTCTTTGGAGAAGCCAAGAAGTGCTTGCTTGAAATGATGGACAGGGGGAAAAGGCCCAATGCTGCTACCTACACTGCTGTGATAGAGCTATTTGCAAGGCAGGAGGACAAGGCAGCTGAGAAGGAGGGTAAAGAGTTTGTGGAGGTCATGATGGGGAAGGGATTTGTGCCTAATGCAAAGGCAATGGGCGAGGTTTTAAAGGGCAGACCAACACCTGTAATTAGAAGGGTCATGAGTATAGTCCTTTCCAAGTTGAAGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

409

Amino Acids

45.75

Weight (kDa)

8.57

Isoelectric Point (pI)

24.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 80 - 126 1.6e-08 PPR repeat family
PPR_2 PF13041 276 - 318 3.9e-12 PPR repeat family
TPR_24 PF23276 276 - 359 1.1e-07 Fungal tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 893
Acc16I TGCGCA 1 cut(s) 666
Acc36I ACCTGC 1 cut(s) 893
AccB7I CCANNNNNTGG 1 cut(s) 256
AccI GTMKAC 1 cut(s) 384
AccIII TCCGGA 1 cut(s) 678
AciI CCGC 2 cut(s) 5, 235
AcuI CTGAAG 1 cut(s) 743
AdeI CACNNNGTG 1 cut(s) 256
AfaI GTAC 2 cut(s) 629, 884
AfiI CCNNNNNNNGG 3 cut(s) 234, 256, 508
AgsI TTSAA 6 cut(s) 152, 208, 587, 601, 998, 1222
AjnI CCWGG 2 cut(s) 700, 885
AleI CACNNNNGTG 2 cut(s) 828, 1043
AloI GAACNNNNNNTCC 2 cut(s) 798, 830
AluBI AGCT 6 cut(s) 11, 202, 880, 899, 1054, 1082
AluI AGCT 6 cut(s) 11, 202, 880, 899, 1054, 1082
Alw26I GTCTC 2 cut(s) 777, 788
Ama87I CYCGRG 1 cut(s) 563
Aor13HI TCCGGA 1 cut(s) 678
AoxI GGCC 5 cut(s) 178, 306, 592, 703, 1019
ApeKI GCWGC 5 cut(s) 498, 899, 953, 1028, 1079
AspLEI GCGC 2 cut(s) 667, 690
AspS9I GGNCC 2 cut(s) 178, 1020
AsuC2I CCSGG 1 cut(s) 503
AsuHPI GGTGA 2 cut(s) 197, 754
AvaI CYCGRG 1 cut(s) 563
BaeGI GKGCMC 1 cut(s) 563
BbvI GCAGC 5 cut(s) 485, 886, 940, 1015, 1091
BccI CCATC 3 cut(s) 743, 997, 1111
BciT130I CCWGG 2 cut(s) 702, 887
BclI TGATCA 1 cut(s) 729
BcnI CCSGG 1 cut(s) 503
BcoDI GTCTC 2 cut(s) 777, 788
BfaI CTAG 3 cut(s) 12, 431, 758
BfmI CTRYAG 1 cut(s) 900
BfuAI ACCTGC 1 cut(s) 893
BisI GCNGC 5 cut(s) 499, 900, 954, 1029, 1080
BlsI GCNGC 5 cut(s) 500, 901, 955, 1030, 1081
Bme1390I CCNGG 3 cut(s) 503, 702, 887
BmeT110I CYCGRG 1 cut(s) 563
BmgT120I GGNCC 2 cut(s) 178, 1020
BmrFI CCNGG 3 cut(s) 503, 702, 887
BmsI GCATC 2 cut(s) 55, 652
BpuEI CTTGAG 4 cut(s) 20, 287, 692, 833
BpuMI CCSGG 1 cut(s) 503
BsaJI CCNNGG 7 cut(s) 181, 291, 493, 549, 700, 768, 886
BsaWI WCCGGW 1 cut(s) 678
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 256, 508
Bse1I ACTGG 1 cut(s) 334
Bse3DI GCAATG 2 cut(s) 615, 1155
BseAI TCCGGA 1 cut(s) 678
BseBI CCWGG 2 cut(s) 702, 887
BseDI CCNNGG 7 cut(s) 181, 291, 493, 549, 700, 768, 886
BseGI GGATG 7 cut(s) 70, 244, 344, 456, 460, 667, 754
BseLI CCNNNNNNNGG 3 cut(s) 234, 256, 508
BseMI GCAATG 2 cut(s) 615, 1155
BseMII CTCAG 2 cut(s) 516, 1074
BseNI ACTGG 1 cut(s) 334
BseSI GKGCMC 1 cut(s) 563
BseXI GCAGC 5 cut(s) 485, 886, 940, 1015, 1091
BshFI GGCC 5 cut(s) 180, 308, 594, 705, 1021
BsiHKCI CYCGRG 1 cut(s) 563
BsiSI CCGG 2 cut(s) 502, 679
BslFI GGGAC 2 cut(s) 134, 960
BslI CCNNNNNNNGG 3 cut(s) 234, 256, 508
BsmAI GTCTC 2 cut(s) 777, 788
BsmFI GGGAC 2 cut(s) 134, 960
BsnI GGCC 5 cut(s) 180, 308, 594, 705, 1021
BsoBI CYCGRG 1 cut(s) 563
Bsp1286I GDGCHC 1 cut(s) 563
Bsp13I TCCGGA 1 cut(s) 678
Bsp1407I TGTACA 1 cut(s) 627
Bsp143I GATC 1 cut(s) 729
Bsp19I CCATGG 1 cut(s) 768
BspACI CCGC 2 cut(s) 5, 235
BspANI GGCC 5 cut(s) 180, 308, 594, 705, 1021
BspCNI CTCAG 2 cut(s) 517, 1075
BspEI TCCGGA 1 cut(s) 678
BspHI TCATGA 2 cut(s) 1113, 1197
BspMAI CTGCAG 1 cut(s) 904
BspMI ACCTGC 1 cut(s) 893
BsrDI GCAATG 2 cut(s) 615, 1155
BsrGI TGTACA 1 cut(s) 627
BsrI ACTGG 1 cut(s) 334
BssECI CCNNGG 7 cut(s) 181, 291, 493, 549, 700, 768, 886
BssMI GATC 1 cut(s) 729
BssT1I CCWWGG 4 cut(s) 291, 493, 549, 768
Bst2UI CCWGG 2 cut(s) 702, 887
Bst4CI ACNGT 3 cut(s) 80, 256, 934
Bst6I CTCTTC 1 cut(s) 796
BstAUI TGTACA 1 cut(s) 627
BstC8I GCNNGC 2 cut(s) 283, 992
BstDEI CTNAG 2 cut(s) 525, 1083
BstDSI CCRYGG 1 cut(s) 768
BstF5I GGATG 7 cut(s) 70, 244, 344, 456, 460, 667, 754
BstHHI GCGC 2 cut(s) 667, 690
BstKTI GATC 1 cut(s) 732
BstMAI GTCTC 2 cut(s) 777, 788
BstMBI GATC 1 cut(s) 729
BstMWI GCNNNNNNNGC 2 cut(s) 208, 614
BstNI CCWGG 2 cut(s) 702, 887
BstSCI CCNGG 3 cut(s) 501, 700, 885
BstSFI CTRYAG 1 cut(s) 900
BstSLI GKGCMC 1 cut(s) 563
BstV1I GCAGC 5 cut(s) 485, 886, 940, 1015, 1091
BsuRI GGCC 5 cut(s) 180, 308, 594, 705, 1021
BtgI CCRYGG 1 cut(s) 768
BtsCI GGATG 7 cut(s) 70, 244, 344, 456, 460, 667, 754
BtsI GCAGTG 1 cut(s) 1038
BtsIMutI CAGTG 4 cut(s) 252, 327, 1038, 1225
BveI ACCTGC 1 cut(s) 893
Cac8I GCNNGC 2 cut(s) 283, 992
CciI TCATGA 2 cut(s) 1113, 1197
CfoI GCGC 2 cut(s) 667, 690
Cfr13I GGNCC 2 cut(s) 178, 1020
Csp6I GTAC 2 cut(s) 628, 883
CviAII CATG 6 cut(s) 44, 94, 319, 769, 1114, 1198
CviQI GTAC 2 cut(s) 628, 883
DdeI CTNAG 2 cut(s) 525, 1083
DpnI GATC 1 cut(s) 731
DpnII GATC 1 cut(s) 729
DraI TTTAAA 1 cut(s) 1164
DraIII CACNNNGTG 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 796
EarI CTCTTC 1 cut(s) 796
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 4 cut(s) 291, 493, 549, 768
Eco147I AGGCCT 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 743
Eco88I CYCGRG 1 cut(s) 563
EcoRII CCWGG 2 cut(s) 700, 885
EcoT14I CCWWGG 4 cut(s) 291, 493, 549, 768
ErhI CCWWGG 4 cut(s) 291, 493, 549, 768
FaeI CATG 6 cut(s) 47, 97, 322, 772, 1117, 1201
FalI AAGNNNNNCTT 4 cut(s) 793, 825, 974, 1006
FaqI GGGAC 2 cut(s) 134, 960
FatI CATG 6 cut(s) 43, 93, 318, 768, 1113, 1197
FauI CCCGC 1 cut(s) 228
FbaI TGATCA 1 cut(s) 729
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 5 cut(s) 499, 900, 954, 1029, 1080
FokI GGATG 7 cut(s) 77, 251, 331, 447, 463, 674, 761
Fsp4HI GCNGC 5 cut(s) 499, 900, 954, 1029, 1080
FspBI CTAG 3 cut(s) 12, 431, 758
FspI TGCGCA 1 cut(s) 666
GlaI GCGC 2 cut(s) 666, 689
GluI GCNGC 5 cut(s) 499, 900, 954, 1029, 1080
HaeIII GGCC 5 cut(s) 180, 308, 594, 705, 1021
HapII CCGG 2 cut(s) 502, 679
HhaI GCGC 2 cut(s) 667, 690
Hin1II CATG 6 cut(s) 47, 97, 322, 772, 1117, 1201
Hin6I GCGC 2 cut(s) 665, 688
HinP1I GCGC 2 cut(s) 665, 688
HinfI GANTC 7 cut(s) 110, 128, 489, 506, 566, 764, 948
HpaII CCGG 2 cut(s) 502, 679
HphI GGTGA 2 cut(s) 197, 754
Hpy166II GTNNAC 3 cut(s) 385, 628, 630
Hpy188I TCNGA 2 cut(s) 220, 394
Hpy188III TCNNGA 5 cut(s) 37, 679, 709, 1114, 1198
Hpy8I GTNNAC 3 cut(s) 385, 628, 630
HpyAV CCTTC 8 cut(s) 46, 511, 584, 607, 739, 1081, 1117, 1185
HpyCH4III ACNGT 3 cut(s) 80, 256, 934
HpyCH4V TGCA 5 cut(s) 374, 902, 930, 1061, 1142
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 614
HpyF3I CTNAG 2 cut(s) 525, 1083
Hsp92II CATG 6 cut(s) 47, 97, 322, 772, 1117, 1201
HspAI GCGC 2 cut(s) 665, 688
Kpn2I TCCGGA 1 cut(s) 678
Ksp22I TGATCA 1 cut(s) 729
Kzo9I GATC 1 cut(s) 729
LmnI GCTCC 1 cut(s) 343
Lsp1109I GCAGC 5 cut(s) 485, 886, 940, 1015, 1091
LweI GCATC 2 cut(s) 55, 652
MaeI CTAG 3 cut(s) 12, 431, 758
MaeIII GTNAC 1 cut(s) 717
MalI GATC 1 cut(s) 731
MboI GATC 1 cut(s) 729
MboII GAAGA 4 cut(s) 430, 599, 736, 813
MhlI GDGCHC 1 cut(s) 563
MluCI AATT 5 cut(s) 22, 139, 400, 571, 1185
MlyI GAGTC 5 cut(s) 122, 498, 515, 575, 942
MmeI TCCRAC 1 cut(s) 420
MroI TCCGGA 1 cut(s) 678
MseI TTAA 5 cut(s) 135, 579, 837, 938, 1163
MslI CAYNNNNRTG 3 cut(s) 773, 828, 1043
MspA1I CMGCKG 1 cut(s) 1082
MspI CCGG 2 cut(s) 502, 679
MspR9I CCNGG 3 cut(s) 503, 702, 887
MvaI CCWGG 2 cut(s) 702, 887
MwoI GCNNNNNNNGC 2 cut(s) 208, 614
NciI CCSGG 1 cut(s) 503
NcoI CCATGG 1 cut(s) 768
NdeII GATC 1 cut(s) 729
NlaIII CATG 6 cut(s) 47, 97, 322, 772, 1117, 1201
NsbI TGCGCA 1 cut(s) 666
OliI CACNNNNGTG 2 cut(s) 828, 1043
PagI TCATGA 2 cut(s) 1113, 1197
PaqCI CACCTGC 1 cut(s) 893
PceI AGGCCT 1 cut(s) 308
PfeI GAWTC 2 cut(s) 110, 764
PflMI CCANNNNNTGG 1 cut(s) 256
PkrI GCNGC 5 cut(s) 500, 901, 955, 1030, 1081
PleI GAGTC 5 cut(s) 122, 497, 514, 574, 942
PpsI GAGTC 5 cut(s) 122, 497, 514, 574, 942
Psp6I CCWGG 2 cut(s) 700, 885
PspGI CCWGG 2 cut(s) 700, 885
PspPI GGNCC 2 cut(s) 178, 1020
PstI CTGCAG 1 cut(s) 904
PvuII CAGCTG 1 cut(s) 1082
RsaI GTAC 2 cut(s) 629, 884
RsaNI GTAC 2 cut(s) 628, 883
RseI CAYNNNNRTG 3 cut(s) 773, 828, 1043
SaqAI TTAA 5 cut(s) 135, 579, 837, 938, 1163
SatI GCNGC 5 cut(s) 499, 900, 954, 1029, 1080
Sau3AI GATC 1 cut(s) 729
Sau96I GGNCC 2 cut(s) 178, 1020
SchI GAGTC 5 cut(s) 122, 498, 515, 575, 942
ScrFI CCNGG 3 cut(s) 503, 702, 887
SduI GDGCHC 1 cut(s) 563
SfaNI GCATC 2 cut(s) 55, 652
SfcI CTRYAG 1 cut(s) 900
SmiMI CAYNNNNRTG 3 cut(s) 773, 828, 1043
SmlI CTYRAG 4 cut(s) 35, 302, 707, 848
SmoI CTYRAG 4 cut(s) 35, 302, 707, 848
Sse9I AATT 5 cut(s) 22, 139, 400, 571, 1185
SseBI AGGCCT 1 cut(s) 308
SsiI CCGC 2 cut(s) 5, 235
SspMI CTAG 3 cut(s) 12, 431, 758
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 3 cut(s) 501, 700, 885
StyI CCWWGG 4 cut(s) 291, 493, 549, 768
TaaI ACNGT 3 cut(s) 80, 256, 934
TaqI TCGA 1 cut(s) 113
TaqII GACCGA 1 cut(s) 237
TasI AATT 5 cut(s) 22, 139, 400, 571, 1185
TatI WGTACW 1 cut(s) 627
TfiI GAWTC 2 cut(s) 110, 764
Tru1I TTAA 5 cut(s) 135, 579, 837, 938, 1163
Tru9I TTAA 5 cut(s) 135, 579, 837, 938, 1163
TscAI CASTG 3 cut(s) 259, 334, 1045
TseI GCWGC 5 cut(s) 498, 899, 953, 1028, 1079
TspDTI ATGAA 6 cut(s) 65, 110, 204, 467, 626, 777
TspRI CASTG 3 cut(s) 259, 334, 1045
Van91I CCANNNNNTGG 1 cut(s) 256
XmiI GTMKAC 1 cut(s) 384
XspI CTAG 3 cut(s) 12, 431, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.