RLG00000001930

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000101
Physical Location & Seq
Forward (+)
23173464 .. 23174706
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001930

Sequence Viewer

Length: 1188 bp
ATGGGGGATACCGAGGTAAAGTCCACAATTGGGGCTTCTGCTGATGACCTCAAGAAACATGTAATGGAGGTTTTTGAGGAGACCACCAAAGACTCTGAGGACTTTGTTTTGCCACTAAAATTTTCCATGATTCGCAACTATGATGACCTTAACGAATATGCTATTCAAATATTCGATTCGATGGCAAACGACGACCTTCTCGCCGAAGCCAAAGAGCTCTTTAAGCCTCTCTCTGACCAGGGCATACTGCCAGACGTGCCTGTCCTCACCATTGTCATCGGGGAATATGCCTTTGCTGGCGCGATCAAGGCTGCTCTCAAGGTCTACCAGCGCATGTTAGCCACCGACTCTTCCGATGTCAATTGTGTTGGCCTTGCCAAGAAATATTTTATGAAAATGTTGGATAAGGGATTGAAGCCCCATGGTGTGTCCTATATCTCTGTCTTTGATGCCATTGCCCGCCGGGACTCGGTGGAGAAGGCCAGGGAGTTCCTTGAGCAGATAAAAGCAAAGGGGTTCAGCCTTAAGTCCAATGTTTTCTACTTTGACGAAGCCCACCTCACAGAGGCGATGAAGATAAAGAAGTTGCTCCATGATCTCGCCAACAACACGACTGACAAGGATATAAAAAAGCTCTTCCGCAAGTGGTGCACCAGTGGACATGGCTTCCAGAAAGAGTCAATGAAGATGTACAAGGCTCTGGTGAAGGATGGTAATGCAGATGAGGCCATGGTGGTTCTTATGTTGTTCATTAAGGGCATAAAACCGGCCGTCCTAATCCATACCTGCGTTATAGAGACCTACGTCAATGCTGGCAAGATCAAGGGTGCTCTTGAGGCGTACAAGGACATGTTAGCTGCTGGGGTTGCCCCAAACTCCTACACTTACACATTGTTAATCAAGGGACTCACTGCTGACCCCAACTTCTTTGGAGATGCCAAGAAGTTTTTGCTTGAGATGATGGATAAAGGGAAGCGGCCCAATGCTTCTACCTACACTGCAGTGATAGAGGGCTTTGCAAAGCAGGAGGACAAGGCAGCTGAGGAGGAGGGAAAAGAGTTGGTGGAGGTGATGATGGGTAAGGGGTTTGTGCCAAACGCAAAGGCTATGATGGAGGTTTTAAAGGGAAGACCAACAGCTGTGATAAGAAGGGTCATGAACATTGTCCTTTCTAAGTTGAAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

396

Amino Acids

43.96

Weight (kDa)

8.12

Isoelectric Point (pI)

23.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 243 - 345 1.1e-08 Fungal tetratrico peptide repeats
PPR_2 PF13041 258 - 303 1.5e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
Acc36I ACCTGC 1 cut(s) 794
AccI GTMKAC 1 cut(s) 324
AccII CGCG 1 cut(s) 302
AciI CCGC 3 cut(s) 460, 640, 976
AcoI YGGCCR 1 cut(s) 768
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 2 cut(s) 692, 842
AfiI CCNNNNNNNGG 3 cut(s) 30, 469, 565
AflII CTTAAG 1 cut(s) 524
AflIII ACRYGT 2 cut(s) 58, 849
AgsI TTSAA 3 cut(s) 167, 415, 1180
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 2 cut(s) 237, 482
AleI CACNNNNGTG 1 cut(s) 1001
AluBI AGCT 5 cut(s) 217, 634, 857, 1040, 1139
AluI AGCT 5 cut(s) 217, 634, 857, 1040, 1139
Alw21I GWGCWC 3 cut(s) 219, 653, 832
Alw26I GTCTC 2 cut(s) 74, 791
Alw44I GTGCAC 1 cut(s) 649
AoxI GGCC 5 cut(s) 370, 480, 726, 768, 977
ApaLI GTGCAC 1 cut(s) 649
ApeKI GCWGC 3 cut(s) 311, 857, 1037
ApoI RAATTY 1 cut(s) 119
AspLEI GCGC 2 cut(s) 302, 333
AspS9I GGNCC 1 cut(s) 978
AsuC2I CCSGG 1 cut(s) 464
AsuHPI GGTGA 3 cut(s) 259, 715, 1081
BaeGI GKGCMC 1 cut(s) 653
BaeI ACNNNNGTAYC 1 cut(s) 33
BanII GRGCYC 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 1135
Bbv12I GWGCWC 3 cut(s) 219, 653, 832
BbvCI CCTCAGC 1 cut(s) 1041
BbvI GCAGC 3 cut(s) 298, 844, 1049
BccI CCATC 5 cut(s) 175, 704, 955, 1069, 1105
BceAI ACGGC 1 cut(s) 755
BciT130I CCWGG 2 cut(s) 239, 484
BcnI CCSGG 1 cut(s) 464
BcoDI GTCTC 2 cut(s) 74, 791
BfmI CTRYAG 1 cut(s) 999
BfrI CTTAAG 1 cut(s) 524
BfuAI ACCTGC 1 cut(s) 794
BisI GCNGC 4 cut(s) 312, 858, 977, 1038
BlsI GCNGC 4 cut(s) 313, 859, 978, 1039
Bme1390I CCNGG 3 cut(s) 239, 464, 484
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 978
BmrFI CCNGG 3 cut(s) 239, 464, 484
BmsI GCATC 2 cut(s) 439, 925
BoxI GACNNNNGTC 1 cut(s) 803
BpiI GAAGAC 1 cut(s) 1135
Bpu10I CCTNAGC 1 cut(s) 1041
BpuEI CTTGAG 5 cut(s) 35, 302, 515, 854, 974
BpuMI CCSGG 1 cut(s) 464
BsaI GGTCTC 2 cut(s) 74, 791
BsaJI CCNNGG 5 cut(s) 12, 238, 421, 483, 729
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 469, 565
Bse118I RCCGGY 1 cut(s) 766
Bse1I ACTGG 1 cut(s) 654
Bse3DI GCAATG 1 cut(s) 453
BseBI CCWGG 2 cut(s) 239, 484
BseDI CCNNGG 5 cut(s) 12, 238, 421, 483, 729
BseGI GGATG 1 cut(s) 715
BseLI CCNNNNNNNGG 3 cut(s) 30, 469, 565
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 2 cut(s) 87, 1032
BseNI ACTGG 1 cut(s) 654
BseRI GAGGAG 3 cut(s) 92, 1058, 1061
BseSI GKGCMC 1 cut(s) 653
BseX3I CGGCCG 1 cut(s) 768
BseXI GCAGC 3 cut(s) 298, 844, 1049
BseYI CCCAGC 1 cut(s) 860
Bsh1236I CGCG 1 cut(s) 302
Bsh1285I CGRYCG 1 cut(s) 771
BshFI GGCC 5 cut(s) 372, 482, 728, 770, 979
BsiEI CGRYCG 1 cut(s) 771
BsiHKAI GWGCWC 3 cut(s) 219, 653, 832
BsiSI CCGG 2 cut(s) 463, 767
BslFI GGGAC 2 cut(s) 479, 918
BslI CCNNNNNNNGG 3 cut(s) 30, 469, 565
BsmAI GTCTC 2 cut(s) 74, 791
BsmFI GGGAC 2 cut(s) 479, 918
BsnI GGCC 5 cut(s) 372, 482, 728, 770, 979
Bso31I GGTCTC 2 cut(s) 74, 791
Bsp1286I GDGCHC 3 cut(s) 219, 653, 832
Bsp1407I TGTACA 1 cut(s) 690
Bsp143I GATC 3 cut(s) 303, 595, 819
Bsp19I CCATGG 2 cut(s) 421, 729
BspACI CCGC 3 cut(s) 460, 640, 976
BspANI GGCC 5 cut(s) 372, 482, 728, 770, 979
BspCNI CTCAG 2 cut(s) 88, 1033
BspFNI CGCG 1 cut(s) 302
BspHI TCATGA 1 cut(s) 1155
BspMAI CTGCAG 1 cut(s) 1003
BspMI ACCTGC 1 cut(s) 794
BspQI GCTCTTC 1 cut(s) 641
BspTI CTTAAG 1 cut(s) 524
BspTNI GGTCTC 2 cut(s) 74, 791
BsrDI GCAATG 1 cut(s) 453
BsrFI RCCGGY 1 cut(s) 766
BsrGI TGTACA 1 cut(s) 690
BsrI ACTGG 1 cut(s) 654
BssAI RCCGGY 1 cut(s) 766
BssECI CCNNGG 5 cut(s) 12, 238, 421, 483, 729
BssMI GATC 3 cut(s) 303, 595, 819
BssT1I CCWWGG 2 cut(s) 421, 729
Bst2UI CCWGG 2 cut(s) 239, 484
Bst6I CTCTTC 2 cut(s) 355, 641
BstAFI CTTAAG 1 cut(s) 524
BstAPI GCANNNNNTGC 1 cut(s) 648
BstAUI TGTACA 1 cut(s) 690
BstC8I GCNNGC 3 cut(s) 298, 460, 814
BstDEI CTNAG 3 cut(s) 96, 1041, 1173
BstDSI CCRYGG 2 cut(s) 421, 729
BstENI CCTNNNNNAGG 1 cut(s) 563
BstF5I GGATG 1 cut(s) 715
BstFNI CGCG 1 cut(s) 302
BstHHI GCGC 2 cut(s) 302, 333
BstKTI GATC 3 cut(s) 306, 598, 822
BstMAI GTCTC 2 cut(s) 74, 791
BstMBI GATC 3 cut(s) 303, 595, 819
BstMCI CGRYCG 1 cut(s) 771
BstMWI GCNNNNNNNGC 7 cut(s) 223, 256, 308, 648, 725, 836, 866
BstNI CCWGG 2 cut(s) 239, 484
BstNSI RCATGY 3 cut(s) 62, 337, 853
BstPAI GACNNNNGTC 1 cut(s) 803
BstSCI CCNGG 3 cut(s) 237, 462, 482
BstSFI CTRYAG 1 cut(s) 999
BstSLI GKGCMC 1 cut(s) 653
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 3 cut(s) 298, 844, 1049
BstV2I GAAGAC 1 cut(s) 1135
BstZI CGGCCG 1 cut(s) 768
BsuRI GGCC 5 cut(s) 372, 482, 728, 770, 979
BtgI CCRYGG 2 cut(s) 421, 729
BtgZI GCGATG 1 cut(s) 584
BtrI CACGTC 1 cut(s) 256
BtsCI GGATG 1 cut(s) 715
BtsI GCAGTG 3 cut(s) 909, 996, 1008
BtsIMutI CAGTG 4 cut(s) 661, 909, 996, 1008
BveI ACCTGC 1 cut(s) 794
Cac8I GCNNGC 3 cut(s) 298, 460, 814
CciI TCATGA 1 cut(s) 1155
CfoI GCGC 2 cut(s) 302, 333
Cfr10I RCCGGY 1 cut(s) 766
Cfr13I GGNCC 1 cut(s) 978
Csp6I GTAC 2 cut(s) 691, 841
CviAII CATG 9 cut(s) 59, 127, 334, 422, 593, 662, 730, 850, 1156
CviQI GTAC 2 cut(s) 691, 841
DdeI CTNAG 3 cut(s) 96, 1041, 1173
DpnI GATC 3 cut(s) 305, 597, 821
DpnII GATC 3 cut(s) 303, 595, 819
DraI TTTAAA 1 cut(s) 1122
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
EaeI YGGCCR 1 cut(s) 768
EagI CGGCCG 1 cut(s) 768
Eam1104I CTCTTC 2 cut(s) 355, 641
EarI CTCTTC 2 cut(s) 355, 641
Ecl136II GAGCTC 1 cut(s) 217
EclXI CGGCCG 1 cut(s) 768
Eco130I CCWWGG 2 cut(s) 421, 729
Eco24I GRGCYC 1 cut(s) 219
Eco31I GGTCTC 2 cut(s) 74, 791
Eco52I CGGCCG 1 cut(s) 768
Eco53kI GAGCTC 1 cut(s) 217
EcoICRI GAGCTC 1 cut(s) 217
EcoNI CCTNNNNNAGG 1 cut(s) 563
EcoRII CCWGG 2 cut(s) 237, 482
EcoT14I CCWWGG 2 cut(s) 421, 729
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 2 cut(s) 421, 729
FaeI CATG 9 cut(s) 62, 130, 337, 425, 596, 665, 733, 853, 1159
FaqI GGGAC 2 cut(s) 479, 918
FatI CATG 9 cut(s) 58, 126, 333, 421, 592, 661, 729, 849, 1155
FauI CCCGC 1 cut(s) 467
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 4 cut(s) 312, 858, 977, 1038
FokI GGATG 1 cut(s) 722
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 4 cut(s) 312, 858, 977, 1038
GlaI GCGC 2 cut(s) 301, 332
GluI GCNGC 4 cut(s) 312, 858, 977, 1038
GsaI CCCAGC 1 cut(s) 864
HaeIII GGCC 5 cut(s) 372, 482, 728, 770, 979
HapII CCGG 2 cut(s) 463, 767
HhaI GCGC 2 cut(s) 302, 333
Hin1II CATG 9 cut(s) 62, 130, 337, 425, 596, 665, 733, 853, 1159
Hin6I GCGC 2 cut(s) 300, 331
HinP1I GCGC 2 cut(s) 300, 331
HinfI GANTC 7 cut(s) 92, 130, 176, 347, 467, 677, 906
HpaII CCGG 2 cut(s) 463, 767
HphI GGTGA 3 cut(s) 259, 715, 1081
Hpy166II GTNNAC 4 cut(s) 24, 325, 651, 659
Hpy188I TCNGA 3 cut(s) 97, 235, 355
Hpy188III TCNNGA 4 cut(s) 52, 670, 833, 1156
Hpy8I GTNNAC 4 cut(s) 24, 325, 651, 659
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 5 cut(s) 206, 472, 700, 1143, 1174
HpyCH4IV ACGT 2 cut(s) 255, 804
HpyCH4V TGCA 4 cut(s) 651, 719, 1001, 1019
HpyF10VI GCNNNNNNNGC 7 cut(s) 223, 256, 308, 648, 725, 836, 866
HpyF3I CTNAG 3 cut(s) 96, 1041, 1173
HpySE526I ACGT 2 cut(s) 255, 804
Hsp92II CATG 9 cut(s) 62, 130, 337, 425, 596, 665, 733, 853, 1159
HspAI GCGC 2 cut(s) 300, 331
Kzo9I GATC 3 cut(s) 303, 595, 819
LguI GCTCTTC 1 cut(s) 641
LmnI GCTCC 1 cut(s) 594
Lsp1109I GCAGC 3 cut(s) 298, 844, 1049
LweI GCATC 2 cut(s) 439, 925
MaeII ACGT 2 cut(s) 255, 804
MalI GATC 3 cut(s) 305, 597, 821
MboI GATC 3 cut(s) 303, 595, 819
MboII GAAGA 5 cut(s) 342, 586, 628, 697, 1140
MfeI CAATTG 2 cut(s) 27, 361
MhlI GDGCHC 3 cut(s) 219, 653, 832
MluCI AATT 3 cut(s) 27, 119, 361
MlyI GAGTC 5 cut(s) 86, 341, 461, 686, 900
MmeI TCCRAC 1 cut(s) 381
MseI TTAA 6 cut(s) 150, 222, 525, 753, 896, 1121
MslI CAYNNNNRTG 1 cut(s) 1001
MspA1I CMGCKG 2 cut(s) 1040, 1139
MspCI CTTAAG 1 cut(s) 524
MspI CCGG 2 cut(s) 463, 767
MspR9I CCNGG 3 cut(s) 239, 464, 484
MunI CAATTG 2 cut(s) 27, 361
MvaI CCWGG 2 cut(s) 239, 484
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 7 cut(s) 223, 256, 308, 648, 725, 836, 866
NciI CCSGG 1 cut(s) 464
NcoI CCATGG 2 cut(s) 421, 729
NdeII GATC 3 cut(s) 303, 595, 819
NlaIII CATG 9 cut(s) 62, 130, 337, 425, 596, 665, 733, 853, 1159
NspI RCATGY 3 cut(s) 62, 337, 853
OliI CACNNNNGTG 1 cut(s) 1001
PagI TCATGA 1 cut(s) 1155
PciI ACATGT 2 cut(s) 58, 849
PciSI GCTCTTC 1 cut(s) 641
PfeI GAWTC 2 cut(s) 130, 176
PkrI GCNGC 4 cut(s) 313, 859, 978, 1039
PleI GAGTC 5 cut(s) 86, 341, 461, 685, 900
PpsI GAGTC 5 cut(s) 86, 341, 461, 685, 900
PscI ACATGT 2 cut(s) 58, 849
PshAI GACNNNNGTC 1 cut(s) 803
Psp124BI GAGCTC 1 cut(s) 219
Psp6I CCWGG 2 cut(s) 237, 482
PspFI CCCAGC 1 cut(s) 860
PspGI CCWGG 2 cut(s) 237, 482
PspPI GGNCC 1 cut(s) 978
PstI CTGCAG 1 cut(s) 1003
PvuII CAGCTG 2 cut(s) 1040, 1139
RsaI GTAC 2 cut(s) 692, 842
RsaNI GTAC 2 cut(s) 691, 841
RseI CAYNNNNRTG 1 cut(s) 1001
SacI GAGCTC 1 cut(s) 219
SapI GCTCTTC 1 cut(s) 641
SaqAI TTAA 6 cut(s) 150, 222, 525, 753, 896, 1121
SatI GCNGC 4 cut(s) 312, 858, 977, 1038
Sau3AI GATC 3 cut(s) 303, 595, 819
Sau96I GGNCC 1 cut(s) 978
SchI GAGTC 5 cut(s) 86, 341, 461, 686, 900
ScrFI CCNGG 3 cut(s) 239, 464, 484
SduI GDGCHC 3 cut(s) 219, 653, 832
SfaNI GCATC 2 cut(s) 439, 925
SfcI CTRYAG 1 cut(s) 999
SmiMI CAYNNNNRTG 1 cut(s) 1001
SmlI CTYRAG 6 cut(s) 50, 317, 494, 524, 833, 953
SmoI CTYRAG 6 cut(s) 50, 317, 494, 524, 833, 953
Sse9I AATT 3 cut(s) 27, 119, 361
SsiI CCGC 3 cut(s) 460, 640, 976
SspI AATATT 2 cut(s) 171, 386
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 3 cut(s) 237, 462, 482
StyI CCWWGG 2 cut(s) 421, 729
TaiI ACGT 2 cut(s) 258, 807
TaqI TCGA 2 cut(s) 174, 179
TasI AATT 3 cut(s) 27, 119, 361
TatI WGTACW 1 cut(s) 690
TauI GCSGC 1 cut(s) 979
TfiI GAWTC 2 cut(s) 130, 176
Tru1I TTAA 6 cut(s) 150, 222, 525, 753, 896, 1121
Tru9I TTAA 6 cut(s) 150, 222, 525, 753, 896, 1121
TscAI CASTG 4 cut(s) 661, 916, 1003, 1008
TseI GCWGC 3 cut(s) 311, 857, 1037
TspDTI ATGAA 5 cut(s) 407, 587, 698, 739, 1172
TspRI CASTG 4 cut(s) 661, 916, 1003, 1008
Vha464I CTTAAG 1 cut(s) 524
VneI GTGCAC 1 cut(s) 649
XagI CCTNNNNNAGG 1 cut(s) 563
XapI RAATTY 1 cut(s) 119
XceI RCATGY 3 cut(s) 62, 337, 853
XmiI GTMKAC 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.