Rw7G011370

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000101
Physical Location & Seq
Forward (+)
10675180 .. 10677845
2666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G011370.1

Sequence Viewer

Length: 1788 bp
ATGGCGGCGGACGACGCTGAATTGAAATCCACCACTCTCCTCCCCGATGACCTGGAGCGGCCGCCGGAGGACTTGCAAGAAGTACTCGGAAAGATGTTTACTGAGGAAGCTCTGACCAGCAATACAATCAAGATGGTGGAGGGTTTGTTGAGGGATGGCTTTATGAACATGGGATTGGAGATTGGGGCCAAGGTTCAGGAGACCAATGAGGTGCCCAGGGTTGTCACCGACACTGCAGTCATGGAGCACTACATCAATGCCACCGGAGACAGGACCGAGGATGCTCTCAGAGTGTTCAAGCACATGTTGGTTTCAGGGGTGGAACCGAATGCCTACACATATGCCGTCATCATCAAGGCCCTTGCTGCTGCTGACCTAAAGAAGAACCCCAATTTCGTTGTTTATGCCAAGAATTATTTTGTGGAGATGTTGGACAGGGGAATGCAGCCGAATGAGGAGACTTATGAGGCAGTGTTGGAAGGCATTGGCCACACTGAGAATAAGGCCGAGGCTGAGGAGGTGCGCAGGGAGTTTGTGGAGAATGTGAAAGCAAAGGGGTTTGTGCTGGTGCTCCAGAAGGAGGCCAAGGAGAGGGCTAATCCTCCATCATTGAAGTCCGAGATGGATGTGCTTAAGGAACATGTAATGAAGGTGTTTGAGGATGCCACCAGAGACTGTGAAGACGAGAATGCACGAGCAAGATTCAGAGAGATTGGGGAGGACTATGAGTCACTGAGCAAATGTGCATTCGACCTTTTTAATGCTTTGGTACGTAAAGGGCTCAATGAGGAAGCCAAAGAGCTCTTTAAGCCTCTGTTGGATACAGCCATACTGCCCGACGAGGCTGTCTTTATCATCGTCATCCTTTTTAGCAAGACCAAGAGTGATGCTCTGAAGGTGTATGAGCATATGTTAGCTTATGGGATCACCCCCAGCTCCTGCACTTACAATTTACTCATCGCGACGCTTTCTCTTGATCCCAATTTCATTGGGCATGCCAAGAAGTATTACCTGGAAATGTTGGATAAAGGTATGAAGCCCTGTTTGAGGACCAGCTTGGCTTTGTTCAACGGCATTGCTTGCCTGGAATCATTGGAGAATGGCGAGGAGTTTCTTGAGCAGGTAAAGCCAAAGGGGGTCTTGCCTGATGTCGGTGAAGGCCATTTCACTGAGCTAATGAAGGCATTGAAGTTGTATGATGATCTCCAAAAGAGAACCTCGGACAAAGATATTCAAGAAGTTATCTGCAGGGTCACATTAGATGGTTTCAAGAACCAGTCATCGAAAATGTTCTATGCTATGGTAGAAGATGGCAATGTAGGCGAGGCAATGGATCTCTTTCAATCAACAGTTGAGAGTCGCATCAATCCCATGGTCATAGTTCACACTGCTGTTATTGAAGCCTACATCAAATGTAACAATAACAAGGGTGCTCTCCAGACCTACCTGGACATGTTAGCTGCTGGACTTGCACCTAACTCCTACATGTACAATGTTTTGATCAAGGGACTCTCTGTTGATGCCAACTACTTTAAAGATGCTAAGAAATATTTGGTTGAGATGCTGGACAAGGGCATGCATCCAAATGTTGCTACCTACACTGCAGTGTTAGAGGGTTTTGCAAGGCAGGAGGACAAGAAAGCTGAGGAAGAGGGAAAAGAGTTTCTGGAGGTCATGATGGCTAAGGGGTTTGTCCCTGATACCGAGGCTGTGAGGGAGGTGTTAAAGGGCAGACCAACACCTGTAATTAGCAGGGTCATGAGCATTATCCTTTCCAAGTTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

595

Amino Acids

66.8

Weight (kDa)

4.94

Isoelectric Point (pI)

32.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 72 - 122 4.6e-09 PPR repeat family
PPR_2 PF13041 459 - 504 5.8e-08 PPR repeat family
PPR_2 PF13041 497 - 542 5.9e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 236, 845
Acc16I TGCGCA 1 cut(s) 524
Acc36I ACCTGC 1 cut(s) 1111
AccB1I GGYRCC 1 cut(s) 211
AccBSI CCGCTC 1 cut(s) 58
AccII CGCG 1 cut(s) 962
AciI CCGC 4 cut(s) 5, 8, 58, 62
AclWI GGATC 3 cut(s) 932, 971, 1341
AcoI YGGCCR 2 cut(s) 59, 487
AcuI CTGAAG 1 cut(s) 914
AfaI GTAC 3 cut(s) 84, 771, 1490
AfiI CCNNNNNNNGG 5 cut(s) 270, 580, 591, 1047, 1151
AflII CTTAAG 1 cut(s) 632
AflIII ACRYGT 4 cut(s) 303, 640, 1452, 1485
AgsI TTSAA 9 cut(s) 25, 298, 613, 1069, 1189, 1235, 1270, 1343, 1400
AhdI GACNNNNNGTC 1 cut(s) 727
AjnI CCWGG 5 cut(s) 51, 215, 1011, 1083, 1446
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AleI CACNNNNGTG 1 cut(s) 1604
AluBI AGCT 8 cut(s) 110, 802, 917, 936, 1056, 1174, 1460, 1643
AluI AGCT 8 cut(s) 110, 802, 917, 936, 1056, 1174, 1460, 1643
Alw21I GWGCWC 4 cut(s) 249, 573, 804, 1435
Alw26I GTCTC 4 cut(s) 194, 261, 452, 666
AlwI GGATC 3 cut(s) 932, 971, 1341
AlwNI CAGNNNCTG 2 cut(s) 675, 939
AoxI GGCC 7 cut(s) 59, 186, 357, 487, 504, 582, 1159
ApeKI GCWGC 4 cut(s) 365, 368, 445, 1460
Asp700I GAANNNNTTC 1 cut(s) 1289
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 4 cut(s) 186, 273, 358, 1050
AsuHPI GGTGA 3 cut(s) 217, 919, 1166
AvaII GGWCC 2 cut(s) 273, 1050
BaeGI GKGCMC 1 cut(s) 216
BalI TGGCCA 1 cut(s) 489
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 2 cut(s) 783, 804
BauI CACGAG 1 cut(s) 693
BbsI GAAGAC 1 cut(s) 687
Bbv12I GWGCWC 4 cut(s) 249, 573, 804, 1435
BbvCI CCTCAGC 2 cut(s) 513, 1644
BbvI GCAGC 4 cut(s) 352, 355, 457, 1447
BccI CCATC 7 cut(s) 127, 149, 613, 616, 1256, 1304, 1672
BceAI ACGGC 2 cut(s) 329, 1087
BciT130I CCWGG 5 cut(s) 53, 217, 1013, 1085, 1448
BciVI GTATCC 1 cut(s) 814
BclI TGATCA 1 cut(s) 1500
BcoDI GTCTC 4 cut(s) 194, 261, 452, 666
BfmI CTRYAG 3 cut(s) 234, 1246, 1602
BfrI CTTAAG 1 cut(s) 632
BfuAI ACCTGC 1 cut(s) 1111
BfuI GTATCC 1 cut(s) 814
BisI GCNGC 7 cut(s) 6, 59, 62, 366, 369, 446, 1461
BlsI GCNGC 7 cut(s) 7, 60, 63, 367, 370, 447, 1462
BmcAI AGTACT 1 cut(s) 84
Bme1390I CCNGG 5 cut(s) 53, 217, 1013, 1085, 1448
Bme18I GGWCC 2 cut(s) 273, 1050
BmeRI GACNNNNNGTC 1 cut(s) 727
BmgT120I GGNCC 4 cut(s) 186, 273, 358, 1050
BmiI GGNNCC 3 cut(s) 187, 213, 324
BmrFI CCNGG 5 cut(s) 53, 217, 1013, 1085, 1448
BmsI GCATC 8 cut(s) 271, 652, 877, 1371, 1510, 1528, 1551, 1588
BpiI GAAGAC 1 cut(s) 687
BplI GAGNNNNNCTC 2 cut(s) 874, 906
BpmI CTGGAG 4 cut(s) 74, 557, 1421, 1688
Bpu10I CCTNAGC 3 cut(s) 513, 1644, 1683
BpuEI CTTGAG 1 cut(s) 1136
BsaAI YACGTR 1 cut(s) 773
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 9 cut(s) 189, 215, 216, 276, 507, 585, 1218, 1371, 1704
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 5 cut(s) 270, 580, 591, 1047, 1151
Bse1I ACTGG 1 cut(s) 1276
Bse3DI GCAATG 3 cut(s) 1074, 1321, 1335
BseBI CCWGG 5 cut(s) 53, 217, 1013, 1085, 1448
BseDI CCNNGG 9 cut(s) 189, 215, 216, 276, 507, 585, 1218, 1371, 1704
BseGI GGATG 6 cut(s) 160, 286, 631, 667, 861, 1579
BseLI CCNNNNNNNGG 5 cut(s) 270, 580, 591, 1047, 1151
BseMI GCAATG 3 cut(s) 1074, 1321, 1335
BseMII CTCAG 7 cut(s) 93, 301, 486, 504, 725, 1161, 1635
BseNI ACTGG 1 cut(s) 1276
BseRI GAGGAG 4 cut(s) 29, 470, 530, 1121
BseSI GKGCMC 1 cut(s) 216
BseX3I CGGCCG 1 cut(s) 59
BseXI GCAGC 4 cut(s) 352, 355, 457, 1447
BseYI CCCAGC 1 cut(s) 932
BsgI GTGCAG 1 cut(s) 925
Bsh1236I CGCG 1 cut(s) 962
Bsh1285I CGRYCG 1 cut(s) 62
BshFI GGCC 7 cut(s) 61, 188, 359, 489, 506, 584, 1161
BshNI GGYRCC 1 cut(s) 211
BsiEI CGRYCG 1 cut(s) 62
BsiHKAI GWGCWC 4 cut(s) 249, 573, 804, 1435
BsiSI CCGG 2 cut(s) 65, 264
BslFI GGGAC 2 cut(s) 1521, 1679
BslI CCNNNNNNNGG 5 cut(s) 270, 580, 591, 1047, 1151
BsmAI GTCTC 4 cut(s) 194, 261, 452, 666
BsmFI GGGAC 2 cut(s) 1521, 1679
BsmI GAATGC 4 cut(s) 334, 447, 694, 746
BsnI GGCC 7 cut(s) 61, 188, 359, 489, 506, 584, 1161
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 6 cut(s) 216, 249, 573, 783, 804, 1435
Bsp1407I TGTACA 1 cut(s) 1488
Bsp143I GATC 5 cut(s) 924, 976, 1201, 1333, 1500
Bsp19I CCATGG 1 cut(s) 1371
Bsp68I TCGCGA 1 cut(s) 962
BspACI CCGC 4 cut(s) 5, 8, 58, 62
BspANI GGCC 7 cut(s) 61, 188, 359, 489, 506, 584, 1161
BspCNI CTCAG 7 cut(s) 94, 300, 487, 505, 726, 1162, 1636
BspFNI CGCG 1 cut(s) 962
BspHI TCATGA 2 cut(s) 1674, 1758
BspLI GGNNCC 3 cut(s) 187, 213, 324
BspMAI CTGCAG 3 cut(s) 238, 1250, 1606
BspMI ACCTGC 1 cut(s) 1111
BspPI GGATC 3 cut(s) 932, 971, 1341
BspT107I GGYRCC 1 cut(s) 211
BspTI CTTAAG 1 cut(s) 632
BspTNI GGTCTC 1 cut(s) 194
BsrBI CCGCTC 1 cut(s) 58
BsrDI GCAATG 3 cut(s) 1074, 1321, 1335
BsrGI TGTACA 1 cut(s) 1488
BsrI ACTGG 1 cut(s) 1276
BssECI CCNNGG 9 cut(s) 189, 215, 216, 276, 507, 585, 1218, 1371, 1704
BssMI GATC 5 cut(s) 924, 976, 1201, 1333, 1500
BssSI CACGAG 1 cut(s) 693
BssT1I CCWWGG 3 cut(s) 189, 585, 1371
Bst2BI CACGAG 1 cut(s) 693
Bst2UI CCWGG 5 cut(s) 53, 217, 1013, 1085, 1448
Bst4CI ACNGT 2 cut(s) 677, 1351
Bst6I CTCTTC 1 cut(s) 1644
BstAFI CTTAAG 1 cut(s) 632
BstAPI GCANNNNNTGC 1 cut(s) 1080
BstAUI TGTACA 1 cut(s) 1488
BstBAI YACGTR 1 cut(s) 773
BstC8I GCNNGC 3 cut(s) 996, 1081, 1577
BstDEI CTNAG 9 cut(s) 102, 287, 495, 513, 734, 1170, 1542, 1644, 1683
BstDSI CCRYGG 1 cut(s) 1371
BstENI CCTNNNNNAGG 1 cut(s) 1045
BstF5I GGATG 6 cut(s) 160, 286, 631, 667, 861, 1579
BstFNI CGCG 1 cut(s) 962
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 5 cut(s) 927, 979, 1204, 1336, 1503
BstMAI GTCTC 4 cut(s) 194, 261, 452, 666
BstMBI GATC 5 cut(s) 924, 976, 1201, 1333, 1500
BstMCI CGRYCG 1 cut(s) 62
BstMWI GCNNNNNNNGC 7 cut(s) 14, 365, 808, 1080, 1126, 1320, 1469
BstNI CCWGG 5 cut(s) 53, 217, 1013, 1085, 1448
BstNSI RCATGY 6 cut(s) 307, 644, 998, 1456, 1489, 1579
BstSCI CCNGG 5 cut(s) 51, 215, 1011, 1083, 1446
BstSFI CTRYAG 3 cut(s) 234, 1246, 1602
BstSLI GKGCMC 1 cut(s) 216
BstSNI TACGTA 1 cut(s) 773
BstUI CGCG 1 cut(s) 962
BstV1I GCAGC 4 cut(s) 352, 355, 457, 1447
BstV2I GAAGAC 1 cut(s) 687
BstX2I RGATCY 1 cut(s) 1333
BstYI RGATCY 1 cut(s) 1333
BstZI CGGCCG 1 cut(s) 59
BsuI GTATCC 1 cut(s) 814
BsuRI GGCC 7 cut(s) 61, 188, 359, 489, 506, 584, 1161
BtgI CCRYGG 1 cut(s) 1371
BtgZI GCGATG 1 cut(s) 943
BtsCI GGATG 6 cut(s) 160, 286, 631, 667, 861, 1579
BtsI GCAGTG 5 cut(s) 231, 477, 1386, 1599, 1611
BtsIMutI CAGTG 8 cut(s) 231, 477, 492, 731, 1167, 1386, 1599, 1611
BtuMI TCGCGA 1 cut(s) 962
BveI ACCTGC 1 cut(s) 1111
Cac8I GCNNGC 3 cut(s) 996, 1081, 1577
CaiI CAGNNNCTG 2 cut(s) 675, 939
CciI TCATGA 2 cut(s) 1674, 1758
CciNI GCGGCCGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 525
Cfr13I GGNCC 4 cut(s) 186, 273, 358, 1050
CseI GACGC 2 cut(s) 23, 973
Csp6I GTAC 3 cut(s) 83, 770, 1489
CviQI GTAC 3 cut(s) 83, 770, 1489
DdeI CTNAG 9 cut(s) 102, 287, 495, 513, 734, 1170, 1542, 1644, 1683
DpnI GATC 5 cut(s) 926, 978, 1203, 1335, 1502
DpnII GATC 5 cut(s) 924, 976, 1201, 1333, 1500
DraI TTTAAA 1 cut(s) 1534
DrdI GACNNNNNNGTC 2 cut(s) 236, 845
DriI GACNNNNNGTC 1 cut(s) 727
DseDI GACNNNNNNGTC 2 cut(s) 236, 845
EaeI YGGCCR 2 cut(s) 59, 487
EagI CGGCCG 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 1644
Eam1105I GACNNNNNGTC 1 cut(s) 727
EarI CTCTTC 1 cut(s) 1644
EciI GGCGGA 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 802
EclXI CGGCCG 1 cut(s) 59
Eco105I TACGTA 1 cut(s) 773
Eco130I CCWWGG 3 cut(s) 189, 585, 1371
Eco24I GRGCYC 2 cut(s) 783, 804
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 2 cut(s) 273, 1050
Eco52I CGGCCG 1 cut(s) 59
Eco53kI GAGCTC 1 cut(s) 802
Eco57I CTGAAG 1 cut(s) 914
EcoICRI GAGCTC 1 cut(s) 802
EcoNI CCTNNNNNAGG 1 cut(s) 1045
EcoO109I RGGNCCY 1 cut(s) 358
EcoRII CCWGG 5 cut(s) 51, 215, 1011, 1083, 1446
EcoT14I CCWWGG 3 cut(s) 189, 585, 1371
EcoT22I ATGCAT 1 cut(s) 1581
EcoT38I GRGCYC 2 cut(s) 783, 804
ErhI CCWWGG 3 cut(s) 189, 585, 1371
FalI AAGNNNNNCTT 2 cut(s) 1124, 1156
FaqI GGGAC 2 cut(s) 1521, 1679
FauNDI CATATG 2 cut(s) 340, 909
FbaI TGATCA 1 cut(s) 1500
Fnu4HI GCNGC 7 cut(s) 6, 59, 62, 366, 369, 446, 1461
FokI GGATG 6 cut(s) 167, 293, 638, 674, 848, 1566
FriOI GRGCYC 2 cut(s) 783, 804
Fsp4HI GCNGC 7 cut(s) 6, 59, 62, 366, 369, 446, 1461
FspI TGCGCA 1 cut(s) 524
GlaI GCGC 1 cut(s) 524
GluI GCNGC 7 cut(s) 6, 59, 62, 366, 369, 446, 1461
GsaI CCCAGC 1 cut(s) 936
GsuI CTGGAG 4 cut(s) 74, 557, 1421, 1688
HaeIII GGCC 7 cut(s) 61, 188, 359, 489, 506, 584, 1161
HapII CCGG 2 cut(s) 65, 264
HgaI GACGC 2 cut(s) 23, 973
HhaI GCGC 1 cut(s) 525
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HinfI GANTC 5 cut(s) 702, 728, 1088, 1357, 1509
HpaII CCGG 2 cut(s) 65, 264
HphI GGTGA 3 cut(s) 217, 919, 1166
Hpy166II GTNNAC 2 cut(s) 99, 1384
Hpy188I TCNGA 7 cut(s) 89, 114, 290, 619, 707, 894, 1222
Hpy8I GTNNAC 2 cut(s) 99, 1384
Hpy99I CGWCG 3 cut(s) 17, 842, 967
HpyAV CCTTC 6 cut(s) 473, 571, 643, 889, 1151, 1174
HpyCH4III ACNGT 2 cut(s) 677, 1351
HpyCH4IV ACGT 1 cut(s) 772
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 365, 808, 1080, 1126, 1320, 1469
HpyF3I CTNAG 9 cut(s) 102, 287, 495, 513, 734, 1170, 1542, 1644, 1683
HpySE526I ACGT 1 cut(s) 772
HspAI GCGC 1 cut(s) 523
Ksp22I TGATCA 1 cut(s) 1500
Kzo9I GATC 5 cut(s) 924, 976, 1201, 1333, 1500
LmnI GCTCC 4 cut(s) 55, 244, 576, 941
Lsp1109I GCAGC 4 cut(s) 352, 355, 457, 1447
LweI GCATC 8 cut(s) 271, 652, 877, 1371, 1510, 1528, 1551, 1588
MaeII ACGT 1 cut(s) 772
MaeIII GTNAC 4 cut(s) 223, 729, 1252, 1415
MalI GATC 5 cut(s) 926, 978, 1203, 1335, 1502
MbiI CCGCTC 1 cut(s) 58
MboI GATC 5 cut(s) 924, 976, 1201, 1333, 1500
MboII GAAGA 4 cut(s) 394, 692, 1319, 1661
MflI RGATCY 1 cut(s) 1333
MhlI GDGCHC 6 cut(s) 216, 249, 573, 783, 804, 1435
MlsI TGGCCA 1 cut(s) 489
MluCI AATT 6 cut(s) 20, 391, 412, 949, 982, 1746
MluNI TGGCCA 1 cut(s) 489
MlyI GAGTC 3 cut(s) 737, 1366, 1503
MmeI TCCRAC 5 cut(s) 411, 456, 798, 1002, 1761
Mox20I TGGCCA 1 cut(s) 489
Mph1103I ATGCAT 1 cut(s) 1581
MroXI GAANNNNTTC 1 cut(s) 1289
MscI TGGCCA 1 cut(s) 489
MseI TTAA 5 cut(s) 633, 759, 807, 1533, 1724
MslI CAYNNNNRTG 2 cut(s) 1584, 1604
Msp20I TGGCCA 1 cut(s) 489
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 2 cut(s) 65, 264
MspR9I CCNGG 5 cut(s) 53, 217, 1013, 1085, 1448
Mva1269I GAATGC 4 cut(s) 334, 447, 694, 746
MvaI CCWGG 5 cut(s) 53, 217, 1013, 1085, 1448
MvnI CGCG 1 cut(s) 962
MwoI GCNNNNNNNGC 7 cut(s) 14, 365, 808, 1080, 1126, 1320, 1469
NcoI CCATGG 1 cut(s) 1371
NdeI CATATG 2 cut(s) 340, 909
NdeII GATC 5 cut(s) 924, 976, 1201, 1333, 1500
NlaIV GGNNCC 3 cut(s) 187, 213, 324
NmeAIII GCCGAG 1 cut(s) 532
NmuCI GTSAC 3 cut(s) 223, 729, 1252
NotI GCGGCCGC 1 cut(s) 59
NruI TCGCGA 1 cut(s) 962
NsbI TGCGCA 1 cut(s) 524
NsiI ATGCAT 1 cut(s) 1581
NspI RCATGY 6 cut(s) 307, 644, 998, 1456, 1489, 1579
OliI CACNNNNGTG 1 cut(s) 1604
PaeI GCATGC 2 cut(s) 998, 1579
PagI TCATGA 2 cut(s) 1674, 1758
PasI CCCWGGG 1 cut(s) 216
PciI ACATGT 4 cut(s) 303, 640, 1452, 1485
PctI GAATGC 4 cut(s) 334, 447, 694, 746
PdmI GAANNNNTTC 1 cut(s) 1289
PfeI GAWTC 2 cut(s) 702, 1088
PkrI GCNGC 7 cut(s) 7, 60, 63, 367, 370, 447, 1462
PleI GAGTC 3 cut(s) 736, 1365, 1503
PpsI GAGTC 3 cut(s) 736, 1365, 1503
Ppu21I YACGTR 1 cut(s) 773
PscI ACATGT 4 cut(s) 303, 640, 1452, 1485
Psp124BI GAGCTC 1 cut(s) 804
Psp6I CCWGG 5 cut(s) 51, 215, 1011, 1083, 1446
PspFI CCCAGC 1 cut(s) 932
PspGI CCWGG 5 cut(s) 51, 215, 1011, 1083, 1446
PspN4I GGNNCC 3 cut(s) 187, 213, 324
PspPI GGNCC 4 cut(s) 186, 273, 358, 1050
PstI CTGCAG 3 cut(s) 238, 1250, 1606
PstNI CAGNNNCTG 2 cut(s) 675, 939
PsuI RGATCY 1 cut(s) 1333
RruI TCGCGA 1 cut(s) 962
RsaI GTAC 3 cut(s) 84, 771, 1490
RsaNI GTAC 3 cut(s) 83, 770, 1489
RseI CAYNNNNRTG 2 cut(s) 1584, 1604
SacI GAGCTC 1 cut(s) 804
SaqAI TTAA 5 cut(s) 633, 759, 807, 1533, 1724
SatI GCNGC 7 cut(s) 6, 59, 62, 366, 369, 446, 1461
Sau3AI GATC 5 cut(s) 924, 976, 1201, 1333, 1500
Sau96I GGNCC 4 cut(s) 186, 273, 358, 1050
ScaI AGTACT 1 cut(s) 84
SchI GAGTC 3 cut(s) 737, 1366, 1503
ScrFI CCNGG 5 cut(s) 53, 217, 1013, 1085, 1448
SduI GDGCHC 6 cut(s) 216, 249, 573, 783, 804, 1435
SfaNI GCATC 8 cut(s) 271, 652, 877, 1371, 1510, 1528, 1551, 1588
SfcI CTRYAG 3 cut(s) 234, 1246, 1602
SinI GGWCC 2 cut(s) 273, 1050
SmiMI CAYNNNNRTG 2 cut(s) 1584, 1604
SmlI CTYRAG 2 cut(s) 632, 1115
SmoI CTYRAG 2 cut(s) 632, 1115
SnaBI TACGTA 1 cut(s) 773
SphI GCATGC 2 cut(s) 998, 1579
Sse9I AATT 6 cut(s) 20, 391, 412, 949, 982, 1746
SsiI CCGC 4 cut(s) 5, 8, 58, 62
SspI AATATT 1 cut(s) 1550
SstI GAGCTC 1 cut(s) 804
StyD4I CCNGG 5 cut(s) 51, 215, 1011, 1083, 1446
StyI CCWWGG 3 cut(s) 189, 585, 1371
TaaI ACNGT 2 cut(s) 677, 1351
TaiI ACGT 1 cut(s) 775
TaqI TCGA 2 cut(s) 750, 1283
TaqII GACCGA 1 cut(s) 290
TasI AATT 6 cut(s) 20, 391, 412, 949, 982, 1746
TatI WGTACW 2 cut(s) 82, 1488
TauI GCSGC 3 cut(s) 8, 61, 64
TfiI GAWTC 2 cut(s) 702, 1088
Tru1I TTAA 5 cut(s) 633, 759, 807, 1533, 1724
Tru9I TTAA 5 cut(s) 633, 759, 807, 1533, 1724
TscAI CASTG 8 cut(s) 238, 477, 499, 738, 1174, 1393, 1606, 1611
TseFI GTSAC 3 cut(s) 223, 729, 1252
TseI GCWGC 4 cut(s) 365, 368, 445, 1460
Tsp45I GTSAC 3 cut(s) 223, 729, 1252
TspDTI ATGAA 5 cut(s) 179, 662, 976, 1049, 1193
TspRI CASTG 8 cut(s) 238, 477, 499, 738, 1174, 1393, 1606, 1611
Vha464I CTTAAG 1 cut(s) 632
VpaK11BI GGWCC 2 cut(s) 273, 1050
XagI CCTNNNNNAGG 1 cut(s) 1045
XceI RCATGY 6 cut(s) 307, 644, 998, 1456, 1489, 1579
XmnI GAANNNNTTC 1 cut(s) 1289
ZrmI AGTACT 1 cut(s) 84
Zsp2I ATGCAT 1 cut(s) 1581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.