RLG00000001131

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000101
Physical Location & Seq
Reverse (-)
10627337 .. 10628575
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001131

Sequence Viewer

Length: 1239 bp
ATGGCGGAAACTAGTTCCCCCAATTCTTCTGCTGATGACCTCAAGAACCGTGTAATGAAGATTTTCGAGGATGCAACCAAAGACTGTGAGGACGAGTACTCGAAAAGAGAATTTGGCACCATTGGGAGGAGCTACGATTCCCTTAACGATTTTTCGATTAAGTTGTTCAATTCTATGGCAGATACTGGCATCATTGACAGAGCTAGAGAGATGTTTAAGCCTGTCTCTGACTTGGGCATTCTTTCTCCAGTGGCTATCTTCACCATTGTGATTATGACCTACGCCGGTAATCACAAGGCCAAGAGTGCTCTCAAGGTCTACCGGCACATGATAGCCACCGGTGTCAACCCTGCCTCCTACACTTATGTTCAACTCATCTGTGTACTTGCAACAGACTTTTCCAATGTAAAGTTCCTTAGGTATGCCAAGAAGTATTTTCTTGAAATGTTGGATAAGGGGATGAAGCCCAATCCTACACCCTTTTGGAACATTATGGAGGCCATTGCCTACCGAGAGCCAGTGGAGAAGGCCAAGGAGTTCCTTGAGCAGGTAAAAGCCAAGGGGTTCATGCCCCCCGACAGTGGTTTTCACTACAAAGAAGCCTACCTCGCCAAAGGAATGCAAACACTGAAGATGTATGCTAATCTTGTCCACAATGACACCATTGACAAGGATGTTAGAAATTACTTCTATTTGTTGCGCACCTCCACTGGCCATGCCAAAAAACTGGCAAAGATGTACAATGCTTTGGTAGAGGATGGAAATGTAGATGAGGCCACAGAGTTCTTTAACGAAGTTGAGGAGACGGGTATAGAGCCCATGGTTGTAATCCACACCACTGTTATTGAAGCCTACCTCTCGTTTGGCAAGACCAAGGGTGCTCTGGAGGCATACCTGGCCATGTTAGCTGCTGGGGTTGCCCCCAACTCCTACACTTACACTGTTTTAATCAAGGGACTAAGTGCTGACTCCAACTTCTTTGGAGATGCCAAGAAGTATTTGCTCGAGATGATGGACAAGGGGAAGCGGCCCAATGCTGCTACCTTCACTGCGGTGATAGAGGGCTTTGCAAAGCAGGGGGACAAGGCAGTTGAGGAGGAGGGAAAAGAGTTTGTGCAGGTAATGCTGGATAAAGGGTTTGTGCCTAATGCGAAGGCAATGATGGAGGTTTTAAAGGGTAGACCAACATCGGTAATTAGAAGTGCCATGAGTATTGTCCTTTCCACCTTGAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

413

Amino Acids

46.11

Weight (kDa)

7.02

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 254 - 362 9.6e-09 Fungal tetratrico peptide repeats
PPR_3 PF13812 263 - 318 7e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 274 - 320 1.1e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 701
Acc36I ACCTGC 2 cut(s) 538, 1108
AccB1I GGYRCC 1 cut(s) 116
AccI GTMKAC 2 cut(s) 318, 1180
AciI CCGC 3 cut(s) 5, 1027, 1052
AcoI YGGCCR 2 cut(s) 712, 897
AcsI RAATTY 1 cut(s) 110
AcuI CTGAAG 1 cut(s) 650
AfaI GTAC 3 cut(s) 98, 384, 740
AfiI CCNNNNNNNGG 3 cut(s) 126, 547, 581
AgeI ACCGGT 1 cut(s) 338
AgsI TTSAA 5 cut(s) 169, 371, 443, 848, 1231
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 1 cut(s) 894
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AleI CACNNNNGTG 2 cut(s) 266, 1052
AluBI AGCT 3 cut(s) 132, 203, 908
AluI AGCT 3 cut(s) 132, 203, 908
Alw21I GWGCWC 2 cut(s) 310, 883
Alw26I GTCTC 2 cut(s) 229, 797
AlwNI CAGNNNCTG 1 cut(s) 185
Ama87I CYCGRG 1 cut(s) 1004
AoxI GGCC 7 cut(s) 297, 498, 528, 712, 774, 897, 1028
ApeKI GCWGC 2 cut(s) 908, 1037
ApoI RAATTY 1 cut(s) 110
AsiGI ACCGGT 1 cut(s) 338
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 1 cut(s) 702
AspS9I GGNCC 1 cut(s) 1029
AsuHPI GGTGA 2 cut(s) 253, 1066
AvaI CYCGRG 1 cut(s) 1004
AxyI CCTNAGG 1 cut(s) 416
BalI TGGCCA 2 cut(s) 714, 899
BanI GGYRCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 819
Bbv12I GWGCWC 2 cut(s) 310, 883
BbvI GCAGC 2 cut(s) 895, 1024
BccI CCATC 3 cut(s) 752, 1006, 1156
BciT130I CCWGG 1 cut(s) 896
BcoDI GTCTC 2 cut(s) 229, 797
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 204
BfuAI ACCTGC 2 cut(s) 538, 1108
BisI GCNGC 3 cut(s) 909, 1028, 1038
BlsI GCNGC 3 cut(s) 910, 1029, 1039
BmcAI AGTACT 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 896
BmeT110I CYCGRG 1 cut(s) 1004
BmgT120I GGNCC 1 cut(s) 1029
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 896
BmsI GCATC 3 cut(s) 61, 198, 976
BpmI CTGGAG 2 cut(s) 231, 905
BpuEI CTTGAG 3 cut(s) 26, 296, 563
BsaJI CCNNGG 4 cut(s) 531, 558, 819, 873
BsaWI WCCGGW 1 cut(s) 338
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 547, 581
Bse118I RCCGGY 3 cut(s) 284, 321, 338
Bse1I ACTGG 5 cut(s) 190, 248, 518, 715, 732
Bse21I CCTNAGG 1 cut(s) 416
Bse3DI GCAATG 2 cut(s) 501, 1164
BseBI CCWGG 1 cut(s) 896
BseDI CCNNGG 4 cut(s) 531, 558, 819, 873
BseGI GGATG 4 cut(s) 76, 465, 679, 763
BseLI CCNNNNNNNGG 3 cut(s) 126, 547, 581
BseMI GCAATG 2 cut(s) 501, 1164
BseNI ACTGG 5 cut(s) 190, 248, 518, 715, 732
BseRI GAGGAG 4 cut(s) 142, 815, 1109, 1112
BseXI GCAGC 2 cut(s) 895, 1024
BseYI CCCAGC 1 cut(s) 911
BsgI GTGCAG 1 cut(s) 1136
BshFI GGCC 7 cut(s) 299, 500, 530, 714, 776, 899, 1030
BshNI GGYRCC 1 cut(s) 116
BshTI ACCGGT 1 cut(s) 338
BsiHKAI GWGCWC 2 cut(s) 310, 883
BsiHKCI CYCGRG 1 cut(s) 1004
BsiSI CCGG 3 cut(s) 285, 322, 339
BslFI GGGAC 2 cut(s) 969, 1094
BslI CCNNNNNNNGG 3 cut(s) 126, 547, 581
BsmAI GTCTC 2 cut(s) 229, 797
BsmBI CGTCTC 1 cut(s) 797
BsmFI GGGAC 2 cut(s) 969, 1094
BsmI GAATGC 2 cut(s) 237, 624
BsnI GGCC 7 cut(s) 299, 500, 530, 714, 776, 899, 1030
BsoBI CYCGRG 1 cut(s) 1004
Bsp1286I GDGCHC 3 cut(s) 310, 819, 883
Bsp1407I TGTACA 1 cut(s) 738
Bsp19I CCATGG 1 cut(s) 819
BspACI CCGC 3 cut(s) 5, 1027, 1052
BspANI GGCC 7 cut(s) 299, 500, 530, 714, 776, 899, 1030
BspLI GGNNCC 1 cut(s) 118
BspMI ACCTGC 2 cut(s) 538, 1108
BspT107I GGYRCC 1 cut(s) 116
BsrDI GCAATG 2 cut(s) 501, 1164
BsrFI RCCGGY 3 cut(s) 284, 321, 338
BsrGI TGTACA 1 cut(s) 738
BsrI ACTGG 5 cut(s) 190, 248, 518, 715, 732
BssAI RCCGGY 3 cut(s) 284, 321, 338
BssECI CCNNGG 4 cut(s) 531, 558, 819, 873
BssT1I CCWWGG 4 cut(s) 531, 558, 819, 873
Bst2UI CCWGG 1 cut(s) 896
Bst4CI ACNGT 5 cut(s) 50, 86, 581, 841, 943
BstAPI GCANNNNNTGC 1 cut(s) 1123
BstAUI TGTACA 1 cut(s) 738
BstDEI CTNAG 2 cut(s) 416, 959
BstDSI CCRYGG 1 cut(s) 819
BstENI CCTNNNNNAGG 1 cut(s) 545
BstF5I GGATG 4 cut(s) 76, 465, 679, 763
BstHHI GCGC 1 cut(s) 702
BstMAI GTCTC 2 cut(s) 229, 797
BstMWI GCNNNNNNNGC 7 cut(s) 305, 608, 887, 896, 905, 917, 1123
BstNI CCWGG 1 cut(s) 896
BstSCI CCNGG 1 cut(s) 894
BstV1I GCAGC 2 cut(s) 895, 1024
BstXI CCANNNNNNTGG 1 cut(s) 727
Bsu36I CCTNAGG 1 cut(s) 416
BsuRI GGCC 7 cut(s) 299, 500, 530, 714, 776, 899, 1030
BtgI CCRYGG 1 cut(s) 819
BtsCI GGATG 4 cut(s) 76, 465, 679, 763
BtsI GCAGTG 1 cut(s) 1047
BtsIMutI CAGTG 8 cut(s) 255, 525, 586, 626, 708, 837, 939, 1047
BveI ACCTGC 2 cut(s) 538, 1108
CaiI CAGNNNCTG 1 cut(s) 185
CfoI GCGC 1 cut(s) 702
Cfr10I RCCGGY 3 cut(s) 284, 321, 338
Cfr13I GGNCC 1 cut(s) 1029
Csp6I GTAC 3 cut(s) 97, 383, 739
CspAI ACCGGT 1 cut(s) 338
CspCI CAANNNNNGTGG 2 cut(s) 826, 861
CviAII CATG 6 cut(s) 328, 568, 716, 820, 901, 1207
CviQI GTAC 3 cut(s) 97, 383, 739
DdeI CTNAG 2 cut(s) 416, 959
DraI TTTAAA 1 cut(s) 1173
EaeI YGGCCR 2 cut(s) 712, 897
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 4 cut(s) 531, 558, 819, 873
Eco24I GRGCYC 1 cut(s) 819
Eco57I CTGAAG 1 cut(s) 650
Eco81I CCTNAGG 1 cut(s) 416
Eco88I CYCGRG 1 cut(s) 1004
EcoNI CCTNNNNNAGG 1 cut(s) 545
EcoRII CCWGG 1 cut(s) 894
EcoT14I CCWWGG 4 cut(s) 531, 558, 819, 873
EcoT38I GRGCYC 1 cut(s) 819
ErhI CCWWGG 4 cut(s) 531, 558, 819, 873
Esp3I CGTCTC 1 cut(s) 797
FaeI CATG 6 cut(s) 331, 571, 719, 823, 904, 1210
FaqI GGGAC 2 cut(s) 969, 1094
FatI CATG 6 cut(s) 327, 567, 715, 819, 900, 1206
FblI GTMKAC 2 cut(s) 318, 1180
Fnu4HI GCNGC 3 cut(s) 909, 1028, 1038
FokI GGATG 4 cut(s) 83, 472, 686, 770
FriOI GRGCYC 1 cut(s) 819
Fsp4HI GCNGC 3 cut(s) 909, 1028, 1038
FspBI CTAG 2 cut(s) 12, 204
FspI TGCGCA 1 cut(s) 701
GlaI GCGC 1 cut(s) 701
GluI GCNGC 3 cut(s) 909, 1028, 1038
GsaI CCCAGC 1 cut(s) 915
GsuI CTGGAG 2 cut(s) 231, 905
HaeIII GGCC 7 cut(s) 299, 500, 530, 714, 776, 899, 1030
HapII CCGG 3 cut(s) 285, 322, 339
HhaI GCGC 1 cut(s) 702
Hin1II CATG 6 cut(s) 331, 571, 719, 823, 904, 1210
Hin6I GCGC 1 cut(s) 700
HinP1I GCGC 1 cut(s) 700
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 2 cut(s) 137, 968
HpaII CCGG 3 cut(s) 285, 322, 339
HphI GGTGA 2 cut(s) 253, 1066
Hpy166II GTNNAC 5 cut(s) 319, 346, 383, 652, 1181
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 4 cut(s) 43, 440, 884, 1006
Hpy8I GTNNAC 5 cut(s) 319, 346, 383, 652, 1181
HpyAV CCTTC 3 cut(s) 520, 1054, 1147
HpyCH4III ACNGT 5 cut(s) 50, 86, 581, 841, 943
HpyCH4V TGCA 5 cut(s) 74, 389, 622, 1070, 1117
HpyF10VI GCNNNNNNNGC 7 cut(s) 305, 608, 887, 896, 905, 917, 1123
HpyF3I CTNAG 2 cut(s) 416, 959
Hsp92II CATG 6 cut(s) 331, 571, 719, 823, 904, 1210
HspAI GCGC 1 cut(s) 700
LmnI GCTCC 1 cut(s) 129
Lsp1109I GCAGC 2 cut(s) 895, 1024
LweI GCATC 3 cut(s) 61, 198, 976
MaeI CTAG 2 cut(s) 12, 204
MboII GAAGA 4 cut(s) 18, 70, 250, 643
MhlI GDGCHC 3 cut(s) 310, 819, 883
MlsI TGGCCA 2 cut(s) 714, 899
MluCI AATT 5 cut(s) 22, 110, 169, 682, 1194
MluNI TGGCCA 2 cut(s) 714, 899
MlyI GAGTC 1 cut(s) 962
MmeI TCCRAC 2 cut(s) 429, 996
Mox20I TGGCCA 2 cut(s) 714, 899
MroXI GAANNNNTTC 1 cut(s) 62
MscI TGGCCA 2 cut(s) 714, 899
MseI TTAA 6 cut(s) 144, 159, 216, 789, 947, 1172
MslI CAYNNNNRTG 2 cut(s) 266, 1052
Msp20I TGGCCA 2 cut(s) 714, 899
MspI CCGG 3 cut(s) 285, 322, 339
MspR9I CCNGG 1 cut(s) 896
Mva1269I GAATGC 2 cut(s) 237, 624
MvaI CCWGG 1 cut(s) 896
MwoI GCNNNNNNNGC 7 cut(s) 305, 608, 887, 896, 905, 917, 1123
NcoI CCATGG 1 cut(s) 819
NlaIII CATG 6 cut(s) 331, 571, 719, 823, 904, 1210
NlaIV GGNNCC 1 cut(s) 118
NsbI TGCGCA 1 cut(s) 701
OliI CACNNNNGTG 2 cut(s) 266, 1052
PaeR7I CTCGAG 1 cut(s) 1004
PctI GAATGC 2 cut(s) 237, 624
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 137
PinAI ACCGGT 1 cut(s) 338
PkrI GCNGC 3 cut(s) 910, 1029, 1039
PleI GAGTC 1 cut(s) 962
PpsI GAGTC 1 cut(s) 962
Psp6I CCWGG 1 cut(s) 894
PspFI CCCAGC 1 cut(s) 911
PspGI CCWGG 1 cut(s) 894
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 1029
PstNI CAGNNNCTG 1 cut(s) 185
RsaI GTAC 3 cut(s) 98, 384, 740
RsaNI GTAC 3 cut(s) 97, 383, 739
RseI CAYNNNNRTG 2 cut(s) 266, 1052
SaqAI TTAA 6 cut(s) 144, 159, 216, 789, 947, 1172
SatI GCNGC 3 cut(s) 909, 1028, 1038
Sau96I GGNCC 1 cut(s) 1029
ScaI AGTACT 1 cut(s) 98
SchI GAGTC 1 cut(s) 962
ScrFI CCNGG 1 cut(s) 896
SduI GDGCHC 3 cut(s) 310, 819, 883
SfaNI GCATC 3 cut(s) 61, 198, 976
Sfr274I CTCGAG 1 cut(s) 1004
SgrAI CRCCGGYG 1 cut(s) 338
SlaI CTCGAG 1 cut(s) 1004
SmiMI CAYNNNNRTG 2 cut(s) 266, 1052
SmlI CTYRAG 4 cut(s) 41, 311, 542, 1004
SmoI CTYRAG 4 cut(s) 41, 311, 542, 1004
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 5 cut(s) 22, 110, 169, 682, 1194
SsiI CCGC 3 cut(s) 5, 1027, 1052
SspMI CTAG 2 cut(s) 12, 204
StyD4I CCNGG 1 cut(s) 894
StyI CCWWGG 4 cut(s) 531, 558, 819, 873
TaaI ACNGT 5 cut(s) 50, 86, 581, 841, 943
TaqI TCGA 4 cut(s) 66, 101, 155, 1005
TasI AATT 5 cut(s) 22, 110, 169, 682, 1194
TatI WGTACW 3 cut(s) 96, 382, 738
TauI GCSGC 1 cut(s) 1030
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 6 cut(s) 144, 159, 216, 789, 947, 1172
Tru9I TTAA 6 cut(s) 144, 159, 216, 789, 947, 1172
TscAI CASTG 8 cut(s) 255, 525, 586, 633, 715, 844, 946, 1054
TseI GCWGC 2 cut(s) 908, 1037
TspDTI ATGAA 3 cut(s) 71, 476, 556
TspRI CASTG 8 cut(s) 255, 525, 586, 633, 715, 844, 946, 1054
XagI CCTNNNNNAGG 1 cut(s) 545
XapI RAATTY 1 cut(s) 110
XcmI CCANNNNNNNNNTGG 1 cut(s) 880
XhoI CTCGAG 1 cut(s) 1004
XmiI GTMKAC 2 cut(s) 318, 1180
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 2 cut(s) 12, 204
ZrmI AGTACT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.