Rh7DG439300

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000101
Physical Location & Seq
Forward (+)
62455716 .. 62478404
22689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG439300.1

Sequence Viewer

Length: 1890 bp
ATGGAGGACAGTACTAGTTCCCCCAATTCTTCCGCCGATGACCTCAAGAAACGTGTCATGAAGGTTTTCAAGGATGCGACCAAAGACTGTGAGGACAAGGTCTTGAAAAAAATGTTTGACTCCATTGGCGACTATGACTCCCTTAACAACTATGCCTTTCATATGTTCAGAACATTGGCAAATTCCGGCATCCCTGAGGAAGCCAAAGAGCTCTTTAAGCCAAAGAGCTCTAAGTTGGCTGTACTGCCTGACGTGGCCATCTTCACCATTGTCATTCGGGACTATGCCAATGCCGGCAAGACCAAGGCTGCCCACAAGGTCTACCAGCAAATGATAGCCGCCGGTGTCACCCCCACCTCCTGCACTCACACTATACTCATCACGGCACTTGCAACAGACTCGTCTTCTGATGTCAATTTTGTTGGGTATGCCAAGAAGTACTTTTTGGAAATGTTGGATATGGGGATGAAGCCCCATTCTGCCTCCTGCATGACTGTGTTCGACGCCATTGCCTGCCAAGAGTCAGTGGAGAAGATCAGGGAGTTCCTTGAGCAGATACAAGCAAAGGGGTTCGTTCCTGAGTCCAAAATTTTTCAGTTTGGAGAAACCCACCTTGCAGAAGCAATGGAGGGAATGAAGATGTATGATGATCTCATCACCAATACCACTAACAAGGATGTGCAAAAAGTATTCTGCACGTGGAACACCAAGCCAGGTTGCCTCTACAAAAAGGCGTTGAAGATGTACAAGGCTTTGATTGAGGATGGCAATGCAGAACAGGCCATGGAGCTTGATAAGCGCGTTGCTGAGATGCGTATGCAGCCCATGGTTGTAGTGCACACCTCCGTTATTGAAGCCTATCTCAAGTTTGGCAAGACCAAGGGTGCTCTGGAGGCATACTACGGCATGTTAGCTGCTGGGGTTGCCCCAAACTCCTACACTTACACTGTTTTAATCAAGGGACTCACTGCTGACCCCAACTACTCTGGAGATGCCAAGAAGTGCTTGCTTGAGATGATGGACAAGGGGATGAGGCCTAATGCTGCCACCTACACTGCTGTGATAGAGAGCTTTGTAAAGCAAGAGGATGAGGCATCTGAGAAGGAGTGCAAAGAGTTGGTGGAGGTGATGATGGGTAAGGGGCAACAACTTATGAAGAGACTACAATATTGGAGACCAAGGACTGAAATGCAACATCTTAAAAAATCTTGTATAGCTAGCAAGACATTCTCAGTGAAACAGAAGAAAGGAAAAGCTTTGAAAGGCATGTGGATTTCTTCCATTTATAAGGGAGAGGCTGCCATTTGGAGTATTATGAATGTGCCAGTTGATGAAGGGTTGCTTCTCTCCGTGCTTCTAAAGATCAATGCAAAGAAGACATTGGAGTTGGGAGTGTTTACTGGTTATTCTCTTCTGACCACCGCTCTTGCCCTACCGGCTGATGGCAAAATAACAGCAATCGATCCAGATAAAGAAGCCTACGAGGTTGGATTGCCGTTCATTCAAAAGGCCGGGGTGGAGCATAAGATTGACTTCTTTCACTCAGATGCCTTCTCAGTCCTAAAGGATCTCATTAACAATGGCAAGGAAGAAGGGAGCTTTGACTTCGCATTTGTGGATGCTGACAAGGAGAACTACATCAATTATCACAAGCTGCTAGTAAAGCTTGTTAAAGTTGGTGGGATAATAGCTTACGATAACACACTGTGGTTTGGATCGGTTGCAGAACCGGAGGAGACGGTGGCGAAACCTTTAAGGGCAGGCAGAAATCATGTGATGATTAAGCTGAACAACTTTCTGGCAGGCGATTCTCGTGTTGAACTAGCTTTTGTTTCAATCGGGGATGGCCTCACCCTATGCAGGCGCCTAGCCTCTACTGAAACTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

629

Amino Acids

69.99

Weight (kDa)

7.51

Isoelectric Point (pI)

30.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 83 - 131 7.9e-11 PPR repeat family
TPR_24 PF23276 258 - 363 3.1e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 276 - 322 6.1e-10 PPR repeat family
Methyltransf_3 PF01596 435 - 623 4.7e-74 O-methyltransferase
Methyltransf_24 PF13578 461 - 567 1.5e-10 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1287
AccB1I GGYRCC 1 cut(s) 1863
AccBSI CCGCTC 1 cut(s) 1424
AccI GTMKAC 1 cut(s) 321
AccII CGCG 1 cut(s) 801
AciI CCGC 3 cut(s) 33, 339, 1422
AclWI GGATC 3 cut(s) 1457, 1575, 1723
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 2 cut(s) 181, 588
AcvI CACGTG 1 cut(s) 699
AcyI GRCGYC 2 cut(s) 504, 1864
AdeI CACNNNGTG 1 cut(s) 1707
AfaI GTAC 4 cut(s) 13, 243, 440, 746
AfiI CCNNNNNNNGG 2 cut(s) 1442, 1860
AflIII ACRYGT 1 cut(s) 52
AgsI TTSAA 8 cut(s) 70, 106, 739, 854, 1261, 1505, 1820, 1836
AhlI ACTAGT 1 cut(s) 14
AjiI CACGTC 1 cut(s) 253
AjnI CCWGG 1 cut(s) 712
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AleI CACNNNNGTG 1 cut(s) 1058
Alw21I GWGCWC 4 cut(s) 213, 230, 840, 889
Alw26I GTCTC 3 cut(s) 1153, 1168, 1730
Alw44I GTGCAC 1 cut(s) 836
AlwI GGATC 3 cut(s) 1457, 1575, 1723
AoxI GGCC 5 cut(s) 255, 780, 1034, 1509, 1846
ApaLI GTGCAC 1 cut(s) 836
ApeKI GCWGC 6 cut(s) 308, 820, 914, 1043, 1298, 1654
ApoI RAATTY 2 cut(s) 181, 588
ArsI GACNNNNNNTTYG 2 cut(s) 1595, 1627
Asp700I GAANNNNTTC 1 cut(s) 65
AspLEI GCGC 2 cut(s) 801, 1866
AsuC2I CCSGG 1 cut(s) 1513
AsuHPI GGTGA 5 cut(s) 256, 340, 649, 1138, 1843
AsuNHI GCTAGC 1 cut(s) 1217
AxyI CCTNAGG 1 cut(s) 195
BaeGI GKGCMC 1 cut(s) 840
BalI TGGCCA 1 cut(s) 257
BanI GGYRCC 1 cut(s) 1863
BanII GRGCYC 2 cut(s) 213, 230
BauI CACGAG 1 cut(s) 1812
BbrPI CACGTG 1 cut(s) 699
BbsI GAAGAC 2 cut(s) 396, 1382
Bbv12I GWGCWC 4 cut(s) 213, 230, 840, 889
BbvI GCAGC 6 cut(s) 295, 832, 901, 1030, 1285, 1641
BccI CCATC 6 cut(s) 266, 758, 1012, 1126, 1436, 1838
BceAI ACGGC 3 cut(s) 399, 919, 1480
BcgI CGANNNNNNTGC 4 cut(s) 381, 415, 491, 525
BciT130I CCWGG 1 cut(s) 714
BcnI CCSGG 1 cut(s) 1513
BcoDI GTCTC 3 cut(s) 1153, 1168, 1730
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 5 cut(s) 15, 1218, 1658, 1823, 1868
BfoI RGCGCY 1 cut(s) 1867
BglI GCCNNNNNGGC 1 cut(s) 1436
BisI GCNGC 7 cut(s) 309, 339, 821, 915, 1044, 1299, 1655
BlsI GCNGC 7 cut(s) 310, 340, 822, 916, 1045, 1300, 1656
BmcAI AGTACT 2 cut(s) 13, 440
Bme1390I CCNGG 2 cut(s) 714, 1513
BmgBI CACGTC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 1865
BmrFI CCNGG 2 cut(s) 714, 1513
BmsI GCATC 7 cut(s) 64, 198, 801, 982, 1103, 1537, 1609
BmtI GCTAGC 1 cut(s) 1221
BpiI GAAGAC 2 cut(s) 396, 1382
BpmI CTGGAG 2 cut(s) 911, 1008
BpuEI CTTGAG 4 cut(s) 29, 569, 848, 1031
BpuMI CCSGG 1 cut(s) 1513
Bsa29I ATCGAT 1 cut(s) 1461
BsaAI YACGTR 1 cut(s) 699
BsaHI GRCGYC 2 cut(s) 504, 1864
BsaI GGTCTC 1 cut(s) 1168
BsaJI CCNNGG 6 cut(s) 303, 783, 825, 879, 1178, 1512
BsaWI WCCGGW 1 cut(s) 1729
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 2 cut(s) 1442, 1860
Bse118I RCCGGY 3 cut(s) 293, 341, 1435
Bse1I ACTGG 2 cut(s) 1325, 1405
Bse21I CCTNAGG 1 cut(s) 195
Bse3DI GCAATG 3 cut(s) 507, 630, 775
BseBI CCWGG 1 cut(s) 714
BseCI ATCGAT 1 cut(s) 1461
BseDI CCNNGG 6 cut(s) 303, 783, 825, 879, 1178, 1512
BseGI GGATG 9 cut(s) 79, 189, 471, 682, 769, 1035, 1093, 1624, 1849
BseLI CCNNNNNNNGG 2 cut(s) 1442, 1860
BseMI GCAATG 3 cut(s) 507, 630, 775
BseMII CTCAG 7 cut(s) 186, 570, 798, 1089, 1245, 1557, 1569
BseNI ACTGG 2 cut(s) 1325, 1405
BseRI GAGGAG 1 cut(s) 1748
BseSI GKGCMC 1 cut(s) 840
BseXI GCAGC 6 cut(s) 295, 832, 901, 1030, 1285, 1641
BseYI CCCAGC 1 cut(s) 917
BsgI GTGCAG 2 cut(s) 346, 679
Bsh1236I CGCG 1 cut(s) 801
BshFI GGCC 5 cut(s) 257, 782, 1036, 1511, 1848
BshNI GGYRCC 1 cut(s) 1863
BshVI ATCGAT 1 cut(s) 1461
BsiHKAI GWGCWC 4 cut(s) 213, 230, 840, 889
BsiSI CCGG 6 cut(s) 186, 294, 342, 1436, 1512, 1730
BslFI GGGAC 2 cut(s) 293, 975
BslI CCNNNNNNNGG 2 cut(s) 1442, 1860
BsmAI GTCTC 3 cut(s) 1153, 1168, 1730
BsmBI CGTCTC 1 cut(s) 1730
BsmFI GGGAC 2 cut(s) 293, 975
BsnI GGCC 5 cut(s) 257, 782, 1036, 1511, 1848
Bso31I GGTCTC 1 cut(s) 1168
Bsp1286I GDGCHC 4 cut(s) 213, 230, 840, 889
Bsp1407I TGTACA 1 cut(s) 744
Bsp143I GATC 6 cut(s) 534, 649, 1362, 1462, 1567, 1715
Bsp19I CCATGG 2 cut(s) 783, 825
BspACI CCGC 3 cut(s) 33, 339, 1422
BspANI GGCC 5 cut(s) 257, 782, 1036, 1511, 1848
BspCNI CTCAG 7 cut(s) 187, 571, 799, 1090, 1244, 1556, 1568
BspDI ATCGAT 1 cut(s) 1461
BspFNI CGCG 1 cut(s) 801
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 1865
BspOI GCTAGC 1 cut(s) 1221
BspPI GGATC 3 cut(s) 1457, 1575, 1723
BspT107I GGYRCC 1 cut(s) 1863
BspTNI GGTCTC 1 cut(s) 1168
BsrBI CCGCTC 1 cut(s) 1424
BsrDI GCAATG 3 cut(s) 507, 630, 775
BsrFI RCCGGY 3 cut(s) 293, 341, 1435
BsrGI TGTACA 1 cut(s) 744
BsrI ACTGG 2 cut(s) 1325, 1405
BssAI RCCGGY 3 cut(s) 293, 341, 1435
BssECI CCNNGG 6 cut(s) 303, 783, 825, 879, 1178, 1512
BssMI GATC 6 cut(s) 534, 649, 1362, 1462, 1567, 1715
BssNI GRCGYC 2 cut(s) 504, 1864
BssSI CACGAG 1 cut(s) 1812
BssT1I CCWWGG 5 cut(s) 303, 783, 825, 879, 1178
Bst2BI CACGAG 1 cut(s) 1812
Bst2UI CCWGG 1 cut(s) 714
Bst4CI ACNGT 6 cut(s) 11, 89, 496, 949, 1707, 1741
Bst6I CTCTTC 2 cut(s) 1151, 1416
BstACI GRCGYC 2 cut(s) 504, 1864
BstAUI TGTACA 1 cut(s) 744
BstBAI YACGTR 1 cut(s) 699
BstC8I GCNNGC 7 cut(s) 295, 514, 1007, 1219, 1762, 1804, 1862
BstDEI CTNAG 8 cut(s) 195, 231, 579, 807, 1098, 1231, 1543, 1555
BstDSI CCRYGG 2 cut(s) 783, 825
BstF5I GGATG 9 cut(s) 79, 189, 471, 682, 769, 1035, 1093, 1624, 1849
BstFNI CGCG 1 cut(s) 801
BstH2I RGCGCY 1 cut(s) 1867
BstHHI GCGC 2 cut(s) 801, 1866
BstKTI GATC 6 cut(s) 537, 652, 1365, 1465, 1570, 1718
BstMAI GTCTC 3 cut(s) 1153, 1168, 1730
BstMBI GATC 6 cut(s) 534, 649, 1362, 1462, 1567, 1715
BstMWI GCNNNNNNNGC 8 cut(s) 217, 779, 796, 820, 893, 923, 1436, 1663
BstNI CCWGG 1 cut(s) 714
BstNSI RCATGY 2 cut(s) 910, 1270
BstSCI CCNGG 2 cut(s) 712, 1511
BstSLI GKGCMC 1 cut(s) 840
BstUI CGCG 1 cut(s) 801
BstV1I GCAGC 6 cut(s) 295, 832, 901, 1030, 1285, 1641
BstV2I GAAGAC 2 cut(s) 396, 1382
BstX2I RGATCY 1 cut(s) 1567
BstYI RGATCY 1 cut(s) 1567
Bsu15I ATCGAT 1 cut(s) 1461
Bsu36I CCTNAGG 1 cut(s) 195
BsuRI GGCC 5 cut(s) 257, 782, 1036, 1511, 1848
BsuTUI ATCGAT 1 cut(s) 1461
BtgI CCRYGG 2 cut(s) 783, 825
BtrI CACGTC 1 cut(s) 253
BtsCI GGATG 9 cut(s) 79, 189, 471, 682, 769, 1035, 1093, 1624, 1849
BtsI GCAGTG 2 cut(s) 966, 1053
BtsIMutI CAGTG 6 cut(s) 531, 945, 966, 1053, 1239, 1703
Cac8I GCNNGC 7 cut(s) 295, 514, 1007, 1219, 1762, 1804, 1862
CciI TCATGA 1 cut(s) 57
CfoI GCGC 2 cut(s) 801, 1866
Cfr10I RCCGGY 3 cut(s) 293, 341, 1435
ClaI ATCGAT 1 cut(s) 1461
CseI GACGC 1 cut(s) 512
Csp6I GTAC 4 cut(s) 12, 242, 439, 745
CspCI CAANNNNNGTGG 2 cut(s) 1408, 1443
CviAII CATG 7 cut(s) 58, 490, 784, 826, 907, 1267, 1772
CviQI GTAC 4 cut(s) 12, 242, 439, 745
DdeI CTNAG 8 cut(s) 195, 231, 579, 807, 1098, 1231, 1543, 1555
DinI GGCGCC 1 cut(s) 1865
DpnI GATC 6 cut(s) 536, 651, 1364, 1464, 1569, 1717
DpnII GATC 6 cut(s) 534, 649, 1362, 1462, 1567, 1715
DraIII CACNNNGTG 1 cut(s) 1707
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 2 cut(s) 1151, 1416
EarI CTCTTC 2 cut(s) 1151, 1416
EciI GGCGGA 1 cut(s) 22
Ecl136II GAGCTC 2 cut(s) 211, 228
Eco130I CCWWGG 5 cut(s) 303, 783, 825, 879, 1178
Eco147I AGGCCT 1 cut(s) 1036
Eco24I GRGCYC 2 cut(s) 213, 230
Eco31I GGTCTC 1 cut(s) 1168
Eco53kI GAGCTC 2 cut(s) 211, 228
Eco72I CACGTG 1 cut(s) 699
Eco81I CCTNAGG 1 cut(s) 195
EcoICRI GAGCTC 2 cut(s) 211, 228
EcoRII CCWGG 1 cut(s) 712
EcoT14I CCWWGG 5 cut(s) 303, 783, 825, 879, 1178
EcoT38I GRGCYC 2 cut(s) 213, 230
EgeI GGCGCC 1 cut(s) 1865
EheI GGCGCC 1 cut(s) 1865
ErhI CCWWGG 5 cut(s) 303, 783, 825, 879, 1178
Esp3I CGTCTC 1 cut(s) 1730
FaeI CATG 7 cut(s) 61, 493, 787, 829, 910, 1270, 1775
FalI AAGNNNNNCTT 8 cut(s) 425, 457, 989, 1021, 1326, 1358, 1517, 1549
FaqI GGGAC 2 cut(s) 293, 975
FatI CATG 7 cut(s) 57, 489, 783, 825, 906, 1266, 1771
FauNDI CATATG 1 cut(s) 162
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 7 cut(s) 309, 339, 821, 915, 1044, 1299, 1655
FokI GGATG 9 cut(s) 86, 176, 478, 689, 776, 1042, 1100, 1631, 1856
FriOI GRGCYC 2 cut(s) 213, 230
Fsp4HI GCNGC 7 cut(s) 309, 339, 821, 915, 1044, 1299, 1655
FspBI CTAG 5 cut(s) 15, 1218, 1658, 1823, 1868
GlaI GCGC 2 cut(s) 800, 1865
GluI GCNGC 7 cut(s) 309, 339, 821, 915, 1044, 1299, 1655
GsaI CCCAGC 1 cut(s) 921
GsuI CTGGAG 2 cut(s) 911, 1008
HaeII RGCGCY 1 cut(s) 1867
HaeIII GGCC 5 cut(s) 257, 782, 1036, 1511, 1848
HapII CCGG 6 cut(s) 186, 294, 342, 1436, 1512, 1730
HgaI GACGC 1 cut(s) 512
HhaI GCGC 2 cut(s) 801, 1866
Hin1I GRCGYC 2 cut(s) 504, 1864
Hin1II CATG 7 cut(s) 61, 493, 787, 829, 910, 1270, 1775
Hin6I GCGC 2 cut(s) 799, 1864
HinP1I GCGC 2 cut(s) 799, 1864
HindIII AAGCTT 2 cut(s) 1254, 1664
HinfI GANTC 7 cut(s) 119, 137, 398, 521, 581, 963, 1808
HpaII CCGG 6 cut(s) 186, 294, 342, 1436, 1512, 1730
HphI GGTGA 5 cut(s) 256, 340, 649, 1138, 1843
Hpy166II GTNNAC 3 cut(s) 322, 838, 1398
Hpy188I TCNGA 5 cut(s) 170, 409, 1099, 1416, 1546
Hpy188III TCNNGA 8 cut(s) 46, 58, 103, 278, 578, 890, 987, 1466
Hpy8I GTNNAC 3 cut(s) 322, 838, 1398
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 5 cut(s) 55, 1096, 1328, 1561, 1586
HpyCH4III ACNGT 6 cut(s) 11, 89, 496, 949, 1707, 1741
HpyCH4IV ACGT 3 cut(s) 52, 252, 698
HpyF10VI GCNNNNNNNGC 8 cut(s) 217, 779, 796, 820, 893, 923, 1436, 1663
HpyF3I CTNAG 8 cut(s) 195, 231, 579, 807, 1098, 1231, 1543, 1555
HpySE526I ACGT 3 cut(s) 52, 252, 698
Hsp92I GRCGYC 2 cut(s) 504, 1864
Hsp92II CATG 7 cut(s) 61, 493, 787, 829, 910, 1270, 1775
HspAI GCGC 2 cut(s) 799, 1864
KasI GGCGCC 1 cut(s) 1863
KroI GCCGGC 1 cut(s) 293
KroNI GCCGGC 1 cut(s) 295
Kzo9I GATC 6 cut(s) 534, 649, 1362, 1462, 1567, 1715
LmnI GCTCC 3 cut(s) 787, 1519, 1596
Lsp1109I GCAGC 6 cut(s) 295, 832, 901, 1030, 1285, 1641
LweI GCATC 7 cut(s) 64, 198, 801, 982, 1103, 1537, 1609
MaeI CTAG 5 cut(s) 15, 1218, 1658, 1823, 1868
MaeII ACGT 3 cut(s) 52, 252, 698
MaeIII GTNAC 1 cut(s) 346
MalI GATC 6 cut(s) 536, 651, 1364, 1464, 1569, 1717
MbiI CCGCTC 1 cut(s) 1424
MboI GATC 6 cut(s) 534, 649, 1362, 1462, 1567, 1715
MflI RGATCY 1 cut(s) 1567
MhlI GDGCHC 4 cut(s) 213, 230, 840, 889
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 6 cut(s) 25, 181, 415, 588, 1642, 1885
MluNI TGGCCA 1 cut(s) 257
Mly113I GGCGCC 1 cut(s) 1864
MlyI GAGTC 6 cut(s) 113, 131, 392, 530, 590, 957
MmeI TCCRAC 2 cut(s) 435, 1468
Mox20I TGGCCA 1 cut(s) 257
MroNI GCCGGC 1 cut(s) 293
MroXI GAANNNNTTC 1 cut(s) 65
MscI TGGCCA 1 cut(s) 257
MseI TTAA 8 cut(s) 144, 216, 953, 1200, 1575, 1671, 1754, 1782
MslI CAYNNNNRTG 3 cut(s) 494, 1058, 1545
Msp20I TGGCCA 1 cut(s) 257
MspI CCGG 6 cut(s) 186, 294, 342, 1436, 1512, 1730
MspR9I CCNGG 2 cut(s) 714, 1513
MvaI CCWGG 1 cut(s) 714
MvnI CGCG 1 cut(s) 801
MwoI GCNNNNNNNGC 8 cut(s) 217, 779, 796, 820, 893, 923, 1436, 1663
NaeI GCCGGC 1 cut(s) 295
NarI GGCGCC 1 cut(s) 1864
NciI CCSGG 1 cut(s) 1513
NcoI CCATGG 2 cut(s) 783, 825
NdeI CATATG 1 cut(s) 162
NdeII GATC 6 cut(s) 534, 649, 1362, 1462, 1567, 1715
NgoMIV GCCGGC 1 cut(s) 293
NheI GCTAGC 1 cut(s) 1217
NlaIII CATG 7 cut(s) 61, 493, 787, 829, 910, 1270, 1775
NlaIV GGNNCC 1 cut(s) 1865
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 2 cut(s) 910, 1270
OliI CACNNNNGTG 1 cut(s) 1058
PagI TCATGA 1 cut(s) 57
PceI AGGCCT 1 cut(s) 1036
PdiI GCCGGC 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 1808
PflFI GACNNNGTC 1 cut(s) 98
PkrI GCNGC 7 cut(s) 310, 340, 822, 916, 1045, 1300, 1656
PleI GAGTC 6 cut(s) 113, 131, 392, 529, 589, 957
PluTI GGCGCC 1 cut(s) 1867
PmaCI CACGTG 1 cut(s) 699
PmlI CACGTG 1 cut(s) 699
PpsI GAGTC 6 cut(s) 113, 131, 392, 529, 589, 957
Ppu21I YACGTR 1 cut(s) 699
PsiI TTATAA 1 cut(s) 1287
Psp124BI GAGCTC 2 cut(s) 213, 230
Psp6I CCWGG 1 cut(s) 712
PspCI CACGTG 1 cut(s) 699
PspFI CCCAGC 1 cut(s) 917
PspGI CCWGG 1 cut(s) 712
PspN4I GGNNCC 1 cut(s) 1865
PsuI RGATCY 1 cut(s) 1567
PsyI GACNNNGTC 1 cut(s) 98
RsaI GTAC 4 cut(s) 13, 243, 440, 746
RsaNI GTAC 4 cut(s) 12, 242, 439, 745
RseI CAYNNNNRTG 3 cut(s) 494, 1058, 1545
SacI GAGCTC 2 cut(s) 213, 230
SaqAI TTAA 8 cut(s) 144, 216, 953, 1200, 1575, 1671, 1754, 1782
SatI GCNGC 7 cut(s) 309, 339, 821, 915, 1044, 1299, 1655
Sau3AI GATC 6 cut(s) 534, 649, 1362, 1462, 1567, 1715
ScaI AGTACT 2 cut(s) 13, 440
SchI GAGTC 6 cut(s) 113, 131, 392, 530, 590, 957
ScrFI CCNGG 2 cut(s) 714, 1513
SduI GDGCHC 4 cut(s) 213, 230, 840, 889
SfaNI GCATC 7 cut(s) 64, 198, 801, 982, 1103, 1537, 1609
SfoI GGCGCC 1 cut(s) 1865
SgrAI CRCCGGYG 1 cut(s) 341
SmiMI CAYNNNNRTG 3 cut(s) 494, 1058, 1545
SmlI CTYRAG 4 cut(s) 44, 548, 863, 1010
SmoI CTYRAG 4 cut(s) 44, 548, 863, 1010
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 6 cut(s) 25, 181, 415, 588, 1642, 1885
SseBI AGGCCT 1 cut(s) 1036
SsiI CCGC 3 cut(s) 33, 339, 1422
SspDI GGCGCC 1 cut(s) 1863
SspI AATATT 1 cut(s) 1169
SspMI CTAG 5 cut(s) 15, 1218, 1658, 1823, 1868
SstI GAGCTC 2 cut(s) 213, 230
StuI AGGCCT 1 cut(s) 1036
StyD4I CCNGG 2 cut(s) 712, 1511
StyI CCWWGG 5 cut(s) 303, 783, 825, 879, 1178
TaaI ACNGT 6 cut(s) 11, 89, 496, 949, 1707, 1741
TaiI ACGT 3 cut(s) 55, 255, 701
TaqI TCGA 2 cut(s) 501, 1461
TasI AATT 6 cut(s) 25, 181, 415, 588, 1642, 1885
TatI WGTACW 4 cut(s) 11, 241, 438, 744
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 1 cut(s) 1808
Tru1I TTAA 8 cut(s) 144, 216, 953, 1200, 1575, 1671, 1754, 1782
Tru9I TTAA 8 cut(s) 144, 216, 953, 1200, 1575, 1671, 1754, 1782
TscAI CASTG 6 cut(s) 531, 952, 973, 1060, 1239, 1710
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 6 cut(s) 308, 820, 914, 1043, 1298, 1654
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 8 cut(s) 74, 149, 482, 650, 1169, 1331, 1347, 1489
TspGWI ACGGA 2 cut(s) 835, 1339
TspRI CASTG 6 cut(s) 531, 952, 973, 1060, 1239, 1710
Tth111I GACNNNGTC 1 cut(s) 98
VneI GTGCAC 1 cut(s) 836
XapI RAATTY 2 cut(s) 181, 588
XceI RCATGY 2 cut(s) 910, 1270
XcmI CCANNNNNNNNNTGG 1 cut(s) 886
XmiI GTMKAC 1 cut(s) 321
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 5 cut(s) 15, 1218, 1658, 1823, 1868
ZrmI AGTACT 2 cut(s) 13, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.