Rmu_sc0008941.1_g000005

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008941.1
OG0000101
Physical Location & Seq
Reverse (-)
15821 .. 19376
3556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008941.1_g000005.1.cds

Sequence Viewer

Length: 1422 bp
atggctgatgatctcaagagacatgtaatgaaggttttcgaggatgcgaccaaagactgtgtggacagagaagtgaaagaactattcggcatggttcgggactacgattccctcaatcgaaatgcgattatcatgttcaattccatggcaaatcacggcatggttcacgaagccagagatctctttaagcctgtcactgagccggccacactgccggaagtggtgtacgtattcacatttgttattttggtgtacgcccatgccggcaagaccaaggctgctctcaaggtctaccaccacatgttatccactggtgtcactcccactgcctacacatacactgtactcatcaccgcatttggaagagactcttcgggtttcaattttgttggatatgctaagaaattctttttggaaatgttggataaggggatgaaacccctttctgcaacctacatgattgtgttggacctcgttgcctacagagaaccggcggacaaggccaaggagttccttgcgcagatagaagctaagggttggttaagccctggctccaatgcttatcaattcaaagaaggtcacctcacagacgcaatgcacataatcaagatgtatgctgatcttgtcaacaacatcgcggatgagggtgtgcaaacattcttccgcaagtcgcgcacctgcccaggtggcgtcaacaaacggtcgaggaagatgcagaaggctttgaaagaagacggaaatgtagacgagagcatagagatttttagcaccattcttcagacaggcatggagcccatggtcctactccacacctccgttattgaagcctacttaaagtttggcaagatcaagggtgctctggaggtgtactggggcatgttagctgctggggggcgctgggtgatagagggctttgcaaagctggggggcaaggcagctgaggaggagggaaaagagtttgtggtggtattgagggacaaggggttcatgcctaatgcaaaggcaatgagggatgttttaaagggcagaccaacacctgttatcagaagagtcatgagaatgattgtgttggacctcgttgcctacagagaaccggtggacaaggccaaggagttccttgagcagatagaagctaagggtagatatcctttccaccaatctattgtgtggccttaccttcttgttggctttgtgaaactgaatgtggatggcagtagtagtagtctctgctctgggatgtctggtattggtctaattagcacttggggatgtaatcaggtcttctatcattacttgtcaggttttggggattggctttgggatttgttccatgacctcagacttacctctgatcttggtcatagagctgttctggtggaacccgacttgagttccattgtttctgttgttccaactaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

473

Amino Acids

53.11

Weight (kDa)

8.12

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 686
Acc16I TGCGCA 1 cut(s) 519
Acc36I ACCTGC 1 cut(s) 686
AccI GTMKAC 2 cut(s) 291, 744
AccII CGCG 2 cut(s) 638, 673
AciI CCGC 4 cut(s) 354, 494, 638, 664
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 1 cut(s) 404
AcuI CTGAAG 1 cut(s) 761
AcyI GRCGYC 1 cut(s) 690
AfaI GTAC 4 cut(s) 227, 254, 345, 869
AflIII ACRYGT 2 cut(s) 22, 300
AgeI ACCGGT 1 cut(s) 1093
AgsI TTSAA 5 cut(s) 139, 382, 571, 727, 824
AjnI CCWGG 2 cut(s) 547, 682
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AloI GAACNNNNNNTCC 2 cut(s) 968, 1000
AluBI AGCT 6 cut(s) 530, 884, 922, 938, 1133, 1367
AluI AGCT 6 cut(s) 530, 884, 922, 938, 1133, 1367
Alw21I GWGCWC 1 cut(s) 859
Alw26I GTCTC 3 cut(s) 13, 360, 1229
AoxI GGCC 4 cut(s) 204, 501, 1104, 1169
ApeKI GCWGC 3 cut(s) 278, 884, 935
ApoI RAATTY 1 cut(s) 404
AsiGI ACCGGT 1 cut(s) 1093
Asp700I GAANNNNTTC 1 cut(s) 35
AspLEI GCGC 3 cut(s) 520, 675, 897
AspS9I GGNCC 3 cut(s) 469, 799, 1072
AsuHPI GGTGA 3 cut(s) 343, 572, 913
AvaII GGWCC 3 cut(s) 469, 799, 1072
BanII GRGCYC 1 cut(s) 795
BbsI GAAGAC 2 cut(s) 738, 1273
Bbv12I GWGCWC 1 cut(s) 859
BbvCI CCTCAGC 1 cut(s) 939
BbvI GCAGC 3 cut(s) 265, 871, 947
BccI CCATC 1 cut(s) 1202
BceAI ACGGC 1 cut(s) 172
BcgI CGANNNNNNTGC 2 cut(s) 694, 728
BciT130I CCWGG 2 cut(s) 549, 684
BcoDI GTCTC 3 cut(s) 13, 360, 1229
BfaI CTAG 1 cut(s) 1420
BfmI CTRYAG 2 cut(s) 481, 1084
BfoI RGCGCY 1 cut(s) 898
BfuAI ACCTGC 1 cut(s) 686
BglI GCCNNNNNGGC 1 cut(s) 687
BglII AGATCT 1 cut(s) 178
BisI GCNGC 3 cut(s) 279, 885, 936
BlsI GCNGC 3 cut(s) 280, 886, 937
Bme1390I CCNGG 2 cut(s) 549, 684
Bme18I GGWCC 3 cut(s) 469, 799, 1072
BmgT120I GGNCC 3 cut(s) 469, 799, 1072
BmiI GGNNCC 3 cut(s) 553, 792, 1380
BmrFI CCNGG 2 cut(s) 549, 684
BmrI ACTGGG 1 cut(s) 880
BmsI GCATC 2 cut(s) 34, 702
BmuI ACTGGG 1 cut(s) 880
BpiI GAAGAC 2 cut(s) 738, 1273
BpmI CTGGAG 1 cut(s) 881
Bpu10I CCTNAGC 3 cut(s) 531, 939, 1134
BpuEI CTTGAG 3 cut(s) 269, 1139, 1408
BsaAI YACGTR 1 cut(s) 229
BsaHI GRCGYC 1 cut(s) 690
BsaJI CCNNGG 7 cut(s) 144, 273, 504, 547, 682, 795, 1107
BsaWI WCCGGW 1 cut(s) 1093
Bse118I RCCGGY 4 cut(s) 202, 263, 490, 1093
Bse1I ACTGG 2 cut(s) 316, 875
Bse3DI GCAATG 2 cut(s) 600, 1011
BseBI CCWGG 2 cut(s) 549, 684
BseDI CCNNGG 7 cut(s) 144, 273, 504, 547, 682, 795, 1107
BseGI GGATG 7 cut(s) 49, 438, 646, 1018, 1213, 1242, 1274
BseMI GCAATG 2 cut(s) 600, 1011
BseMII CTCAG 3 cut(s) 189, 930, 1351
BseNI ACTGG 2 cut(s) 316, 875
BseRI GAGGAG 2 cut(s) 956, 959
BseXI GCAGC 3 cut(s) 265, 871, 947
BseYI CCCAGC 3 cut(s) 887, 897, 922
Bsh1236I CGCG 2 cut(s) 638, 673
Bsh1285I CGRYCG 1 cut(s) 704
BshFI GGCC 4 cut(s) 206, 503, 1106, 1171
BshTI ACCGGT 1 cut(s) 1093
BsiEI CGRYCG 1 cut(s) 704
BsiHKAI GWGCWC 1 cut(s) 859
BsiSI CCGG 5 cut(s) 203, 215, 264, 491, 1094
BslFI GGGAC 2 cut(s) 113, 989
BsmAI GTCTC 3 cut(s) 13, 360, 1229
BsmFI GGGAC 2 cut(s) 113, 989
BsnI GGCC 4 cut(s) 206, 503, 1106, 1171
Bsp1286I GDGCHC 2 cut(s) 795, 859
Bsp143I GATC 5 cut(s) 10, 178, 619, 846, 1351
Bsp19I CCATGG 2 cut(s) 144, 795
BspACI CCGC 4 cut(s) 354, 494, 638, 664
BspANI GGCC 4 cut(s) 206, 503, 1106, 1171
BspCNI CTCAG 3 cut(s) 190, 931, 1350
BspFNI CGCG 2 cut(s) 638, 673
BspHI TCATGA 1 cut(s) 1053
BspLI GGNNCC 3 cut(s) 553, 792, 1380
BspMI ACCTGC 1 cut(s) 686
BsrDI GCAATG 2 cut(s) 600, 1011
BsrFI RCCGGY 4 cut(s) 202, 263, 490, 1093
BsrI ACTGG 2 cut(s) 316, 875
BssAI RCCGGY 4 cut(s) 202, 263, 490, 1093
BssECI CCNNGG 7 cut(s) 144, 273, 504, 547, 682, 795, 1107
BssMI GATC 5 cut(s) 10, 178, 619, 846, 1351
BssNI GRCGYC 1 cut(s) 690
BssT1I CCWWGG 5 cut(s) 144, 273, 504, 795, 1107
Bst2UI CCWGG 2 cut(s) 549, 684
Bst4CI ACNGT 3 cut(s) 59, 343, 702
Bst6I CTCTTC 3 cut(s) 358, 376, 1042
BstACI GRCGYC 1 cut(s) 690
BstBAI YACGTR 1 cut(s) 229
BstC8I GCNNGC 2 cut(s) 204, 265
BstDEI CTNAG 6 cut(s) 198, 399, 531, 939, 1134, 1337
BstDSI CCRYGG 2 cut(s) 144, 795
BstEII GGTNACC 1 cut(s) 578
BstF5I GGATG 7 cut(s) 49, 438, 646, 1018, 1213, 1242, 1274
BstFNI CGCG 2 cut(s) 638, 673
BstH2I RGCGCY 1 cut(s) 898
BstHHI GCGC 3 cut(s) 520, 675, 897
BstKTI GATC 5 cut(s) 13, 181, 622, 849, 1354
BstMAI GTCTC 3 cut(s) 13, 360, 1229
BstMBI GATC 5 cut(s) 10, 178, 619, 846, 1351
BstMCI CGRYCG 1 cut(s) 704
BstMWI GCNNNNNNNGC 3 cut(s) 500, 672, 687
BstNI CCWGG 2 cut(s) 549, 684
BstNSI RCATGY 3 cut(s) 26, 304, 880
BstPI GGTNACC 1 cut(s) 578
BstSCI CCNGG 2 cut(s) 547, 682
BstSFI CTRYAG 2 cut(s) 481, 1084
BstSNI TACGTA 1 cut(s) 229
BstUI CGCG 2 cut(s) 638, 673
BstV1I GCAGC 3 cut(s) 265, 871, 947
BstV2I GAAGAC 2 cut(s) 738, 1273
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 4 cut(s) 206, 503, 1106, 1171
BtgI CCRYGG 2 cut(s) 144, 795
BtgZI GCGATG 1 cut(s) 619
BtsCI GGATG 7 cut(s) 49, 438, 646, 1018, 1213, 1242, 1274
BtsI GCAGTG 2 cut(s) 209, 324
BtsIMutI CAGTG 5 cut(s) 195, 209, 309, 324, 339
BveI ACCTGC 1 cut(s) 686
Cac8I GCNNGC 2 cut(s) 204, 265
CciI TCATGA 1 cut(s) 1053
CfoI GCGC 3 cut(s) 520, 675, 897
Cfr10I RCCGGY 4 cut(s) 202, 263, 490, 1093
Cfr13I GGNCC 3 cut(s) 469, 799, 1072
CseI GACGC 2 cut(s) 599, 679
Csp6I GTAC 4 cut(s) 226, 253, 344, 868
CspAI ACCGGT 1 cut(s) 1093
CviQI GTAC 4 cut(s) 226, 253, 344, 868
DdeI CTNAG 6 cut(s) 198, 399, 531, 939, 1134, 1337
DpnI GATC 5 cut(s) 12, 180, 621, 848, 1353
DpnII GATC 5 cut(s) 10, 178, 619, 846, 1351
DraI TTTAAA 1 cut(s) 1020
EaeI YGGCCR 1 cut(s) 204
Eam1104I CTCTTC 3 cut(s) 358, 376, 1042
EarI CTCTTC 3 cut(s) 358, 376, 1042
EciI GGCGGA 1 cut(s) 509
Eco105I TACGTA 1 cut(s) 229
Eco130I CCWWGG 5 cut(s) 144, 273, 504, 795, 1107
Eco24I GRGCYC 1 cut(s) 795
Eco32I GATATC 1 cut(s) 1145
Eco47I GGWCC 3 cut(s) 469, 799, 1072
Eco57I CTGAAG 1 cut(s) 761
Eco91I GGTNACC 1 cut(s) 578
EcoO65I GGTNACC 1 cut(s) 578
EcoRII CCWGG 2 cut(s) 547, 682
EcoRV GATATC 1 cut(s) 1145
EcoT14I CCWWGG 5 cut(s) 144, 273, 504, 795, 1107
EcoT38I GRGCYC 1 cut(s) 795
ErhI CCWWGG 5 cut(s) 144, 273, 504, 795, 1107
FalI AAGNNNNNCTT 4 cut(s) 355, 387, 392, 424
FaqI GGGAC 2 cut(s) 113, 989
FblI GTMKAC 2 cut(s) 291, 744
Fnu4HI GCNGC 3 cut(s) 279, 885, 936
FokI GGATG 7 cut(s) 56, 445, 653, 1025, 1220, 1249, 1281
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 3 cut(s) 279, 885, 936
FspBI CTAG 1 cut(s) 1420
FspI TGCGCA 1 cut(s) 519
GlaI GCGC 3 cut(s) 519, 674, 896
GluI GCNGC 3 cut(s) 279, 885, 936
GsaI CCCAGC 3 cut(s) 891, 901, 926
GsuI CTGGAG 1 cut(s) 881
HaeII RGCGCY 1 cut(s) 898
HaeIII GGCC 4 cut(s) 206, 503, 1106, 1171
HapII CCGG 5 cut(s) 203, 215, 264, 491, 1094
HgaI GACGC 2 cut(s) 599, 679
HhaI GCGC 3 cut(s) 520, 675, 897
Hin1I GRCGYC 1 cut(s) 690
Hin6I GCGC 3 cut(s) 518, 673, 895
HinP1I GCGC 3 cut(s) 518, 673, 895
HincII GTYRAC 2 cut(s) 628, 694
HindII GTYRAC 2 cut(s) 628, 694
HinfI GANTC 3 cut(s) 107, 368, 1050
HpaII CCGG 5 cut(s) 203, 215, 264, 491, 1094
HphI GGTGA 3 cut(s) 343, 572, 913
Hpy188I TCNGA 4 cut(s) 780, 1046, 1340, 1351
Hpy188III TCNNGA 6 cut(s) 16, 98, 167, 607, 860, 1054
HpyAV CCTTC 4 cut(s) 25, 569, 712, 1187
HpyCH4III ACNGT 3 cut(s) 59, 343, 702
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 6 cut(s) 449, 598, 652, 715, 917, 998
HpyF10VI GCNNNNNNNGC 3 cut(s) 500, 672, 687
HpyF3I CTNAG 6 cut(s) 198, 399, 531, 939, 1134, 1337
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 690
HspAI GCGC 3 cut(s) 518, 673, 895
KroI GCCGGC 2 cut(s) 202, 263
KroNI GCCGGC 2 cut(s) 204, 265
Kzo9I GATC 5 cut(s) 10, 178, 619, 846, 1351
LmnI GCTCC 2 cut(s) 557, 790
Lsp1109I GCAGC 3 cut(s) 265, 871, 947
LweI GCATC 2 cut(s) 34, 702
MaeI CTAG 1 cut(s) 1420
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 3 cut(s) 193, 316, 578
MalI GATC 5 cut(s) 12, 180, 621, 848, 1353
MboI GATC 5 cut(s) 10, 178, 619, 846, 1351
MboII GAAGA 8 cut(s) 363, 375, 652, 721, 743, 767, 1059, 1273
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 2 cut(s) 795, 859
MluCI AATT 5 cut(s) 139, 382, 404, 566, 1254
MlyI GAGTC 2 cut(s) 362, 1059
MmeI TCCRAC 4 cut(s) 370, 402, 447, 1050
MroNI GCCGGC 2 cut(s) 202, 263
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 4 cut(s) 186, 542, 833, 1019
MslI CAYNNNNRTG 2 cut(s) 461, 1058
MspA1I CMGCKG 1 cut(s) 938
MspI CCGG 5 cut(s) 203, 215, 264, 491, 1094
MspR9I CCNGG 2 cut(s) 549, 684
MvaI CCWGG 2 cut(s) 549, 684
MvnI CGCG 2 cut(s) 638, 673
MwoI GCNNNNNNNGC 3 cut(s) 500, 672, 687
NaeI GCCGGC 2 cut(s) 204, 265
NcoI CCATGG 2 cut(s) 144, 795
NdeII GATC 5 cut(s) 10, 178, 619, 846, 1351
NgoMIV GCCGGC 2 cut(s) 202, 263
NlaIV GGNNCC 3 cut(s) 553, 792, 1380
NmuCI GTSAC 3 cut(s) 193, 316, 578
NsbI TGCGCA 1 cut(s) 519
NspI RCATGY 3 cut(s) 26, 304, 880
PagI TCATGA 1 cut(s) 1053
PaqCI CACCTGC 1 cut(s) 686
PciI ACATGT 2 cut(s) 22, 300
PdiI GCCGGC 2 cut(s) 204, 265
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 1 cut(s) 107
PinAI ACCGGT 1 cut(s) 1093
PkrI GCNGC 3 cut(s) 280, 886, 937
PleI GAGTC 2 cut(s) 362, 1058
PpsI GAGTC 2 cut(s) 362, 1058
Ppu21I YACGTR 1 cut(s) 229
PscI ACATGT 2 cut(s) 22, 300
Psp6I CCWGG 2 cut(s) 547, 682
PspEI GGTNACC 1 cut(s) 578
PspFI CCCAGC 3 cut(s) 887, 897, 922
PspGI CCWGG 2 cut(s) 547, 682
PspN4I GGNNCC 3 cut(s) 553, 792, 1380
PspPI GGNCC 3 cut(s) 469, 799, 1072
PsuI RGATCY 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 938
RsaI GTAC 4 cut(s) 227, 254, 345, 869
RsaNI GTAC 4 cut(s) 226, 253, 344, 868
RseI CAYNNNNRTG 2 cut(s) 461, 1058
SaqAI TTAA 4 cut(s) 186, 542, 833, 1019
SatI GCNGC 3 cut(s) 279, 885, 936
Sau3AI GATC 5 cut(s) 10, 178, 619, 846, 1351
Sau96I GGNCC 3 cut(s) 469, 799, 1072
SchI GAGTC 2 cut(s) 362, 1059
ScrFI CCNGG 2 cut(s) 549, 684
SduI GDGCHC 2 cut(s) 795, 859
SfaNI GCATC 2 cut(s) 34, 702
SfcI CTRYAG 2 cut(s) 481, 1084
SinI GGWCC 3 cut(s) 469, 799, 1072
SmiMI CAYNNNNRTG 2 cut(s) 461, 1058
SmlI CTYRAG 4 cut(s) 14, 284, 1118, 1387
SmoI CTYRAG 4 cut(s) 14, 284, 1118, 1387
SnaBI TACGTA 1 cut(s) 229
Sse9I AATT 5 cut(s) 139, 382, 404, 566, 1254
SsiI CCGC 4 cut(s) 354, 494, 638, 664
SspMI CTAG 1 cut(s) 1420
StyD4I CCNGG 2 cut(s) 547, 682
StyI CCWWGG 5 cut(s) 144, 273, 504, 795, 1107
TaaI ACNGT 3 cut(s) 59, 343, 702
TaiI ACGT 1 cut(s) 231
TaqI TCGA 3 cut(s) 39, 118, 704
TasI AATT 5 cut(s) 139, 382, 404, 566, 1254
TatI WGTACW 2 cut(s) 343, 867
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 4 cut(s) 186, 542, 833, 1019
Tru9I TTAA 4 cut(s) 186, 542, 833, 1019
TscAI CASTG 5 cut(s) 202, 216, 316, 331, 346
TseFI GTSAC 3 cut(s) 193, 316, 578
TseI GCWGC 3 cut(s) 278, 884, 935
Tsp45I GTSAC 3 cut(s) 193, 316, 578
TspDTI ATGAA 3 cut(s) 44, 449, 976
TspGWI ACGGA 2 cut(s) 750, 805
TspRI CASTG 5 cut(s) 202, 216, 316, 331, 346
VpaK11BI GGWCC 3 cut(s) 469, 799, 1072
XapI RAATTY 1 cut(s) 404
XceI RCATGY 3 cut(s) 26, 304, 880
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XmiI GTMKAC 2 cut(s) 291, 744
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 1 cut(s) 1420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.