Rw7G037220

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000101
Physical Location & Seq
Forward (+)
56561885 .. 56563650
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G037220.1

Sequence Viewer

Length: 381 bp
ATGAAGATGATCAATGCACTGGTGAAGGATGGCAACCTAGATGAATCCATGGAGATGTATAGGGACATCATTGAGACAGGAAGAGAACCTTTTGTCCTACTCCACACCTGTGTTATTAAAGCTTATCTCAAGTCTGGCAAGACCAAGAGTGCTTTTGAGCTGTACCAGGGTATGTTAGCTGCAGGTGTTTCCCCCAACTCATACACTTATACAGTTTTAATCAAGGGACTCGCTGCTGACCCCAACTTCTTTGGAGAAGCCAAGAAGTGCTTGCTTGAAATGATGGACAGGGGGAAACCGCCCAATGCTGCTACCTACACTGCTGTGATAGAGCTATTTGCAAGGGAGGAGGACAAGGCAGCTGAGGAGGAGGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

126

Amino Acids

13.99

Weight (kDa)

4.96

Isoelectric Point (pI)

25.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 32 - 121 1.8e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 36 - 78 1.5e-14 PPR repeat family
TPR_24 PF23276 36 - 119 1.4e-08 Fungal tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 173
Acc36I ACCTGC 1 cut(s) 173
AciI CCGC 1 cut(s) 299
AfaI GTAC 1 cut(s) 164
AgsI TTSAA 1 cut(s) 278
AjnI CCWGG 1 cut(s) 165
AleI CACNNNNGTG 2 cut(s) 108, 323
AloI GAACNNNNNNTCC 2 cut(s) 78, 110
AluBI AGCT 5 cut(s) 122, 160, 179, 334, 362
AluI AGCT 5 cut(s) 122, 160, 179, 334, 362
Alw26I GTCTC 1 cut(s) 68
ApeKI GCWGC 4 cut(s) 179, 233, 308, 359
AsuHPI GGTGA 1 cut(s) 34
BbvCI CCTCAGC 1 cut(s) 363
BbvI GCAGC 4 cut(s) 166, 220, 295, 371
BccI CCATC 2 cut(s) 23, 277
BciT130I CCWGG 1 cut(s) 167
BclI TGATCA 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 68
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 173
BisI GCNGC 4 cut(s) 180, 234, 309, 360
BlsI GCNGC 4 cut(s) 181, 235, 310, 361
Bme1390I CCNGG 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 167
Bpu10I CCTNAGC 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 48, 166
Bse1I ACTGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 2 cut(s) 48, 166
BseGI GGATG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 1 cut(s) 24
BseRI GAGGAG 2 cut(s) 362, 380
BseXI GCAGC 4 cut(s) 166, 220, 295, 371
BslFI GGGAC 2 cut(s) 77, 240
BsmAI GTCTC 1 cut(s) 68
BsmFI GGGAC 2 cut(s) 77, 240
Bsp143I GATC 1 cut(s) 9
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 1 cut(s) 299
BspCNI CTCAG 1 cut(s) 355
BspMAI CTGCAG 1 cut(s) 184
BspMI ACCTGC 1 cut(s) 173
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 48, 166
BssMI GATC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 363
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 1 cut(s) 9
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 4 cut(s) 166, 220, 295, 371
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 17, 318
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 163
CviAII CATG 1 cut(s) 49
CviJI RGCY 7 cut(s) 122, 160, 179, 260, 334, 362, 374
CviKI_1 RGCY 7 cut(s) 122, 160, 179, 260, 334, 362, 374
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 1 cut(s) 363
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 1 cut(s) 52
FaiI YATR 5 cut(s) 50, 60, 173, 202, 210
FalI AAGNNNNNCTT 4 cut(s) 73, 105, 254, 286
FaqI GGGAC 2 cut(s) 77, 240
FatI CATG 1 cut(s) 48
FbaI TGATCA 1 cut(s) 9
Fnu4HI GCNGC 4 cut(s) 180, 234, 309, 360
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 4 cut(s) 180, 234, 309, 360
FspBI CTAG 1 cut(s) 38
GluI GCNGC 4 cut(s) 180, 234, 309, 360
Hin1II CATG 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 2 cut(s) 44, 228
HphI GGTGA 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 3 cut(s) 17, 182, 341
HpyF3I CTNAG 1 cut(s) 363
Hsp92II CATG 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 1 cut(s) 9
LpnPI CCDG 8 cut(s) 5, 63, 120, 121, 152, 168, 179, 274
Lsp1109I GCAGC 4 cut(s) 166, 220, 295, 371
MaeI CTAG 1 cut(s) 38
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 2 cut(s) 16, 93
MlyI GAGTC 1 cut(s) 222
MnlI CCTC 5 cut(s) 340, 343, 358, 361, 364
MseI TTAA 2 cut(s) 117, 218
MslI CAYNNNNRTG 3 cut(s) 53, 108, 323
MspA1I CMGCKG 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
NcoI CCATGG 1 cut(s) 48
NdeII GATC 1 cut(s) 9
NlaIII CATG 1 cut(s) 52
OliI CACNNNNGTG 2 cut(s) 108, 323
PaqCI CACCTGC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 4 cut(s) 181, 235, 310, 361
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PstI CTGCAG 1 cut(s) 184
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
RseI CAYNNNNRTG 3 cut(s) 53, 108, 323
SaqAI TTAA 2 cut(s) 117, 218
SatI GCNGC 4 cut(s) 180, 234, 309, 360
Sau3AI GATC 1 cut(s) 9
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 167
SfcI CTRYAG 1 cut(s) 180
SmiMI CAYNNNNRTG 3 cut(s) 53, 108, 323
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SsiI CCGC 1 cut(s) 299
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 214
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 2 cut(s) 117, 218
Tru9I TTAA 2 cut(s) 117, 218
TscAI CASTG 2 cut(s) 24, 325
TseI GCWGC 4 cut(s) 179, 233, 308, 359
TspDTI ATGAA 2 cut(s) 17, 57
TspRI CASTG 2 cut(s) 24, 325
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.