FvH4_5g31070

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000101
Physical Location & Seq
Forward (+)
21976091 .. 21978106
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31070.t1

Sequence Viewer

Length: 1242 bp
ATGGCGGAAACTAGTTCCCGCAAATCCTCTGCTGATGACCTCAAGAAACTTGCAATGAAGGTTTTCGAGGATGCCACCAAAGACTGTGAGGACGAGGAATTGAAAAGAGTATTTCGCACGGTTGGGAGTTGCTACGATTCCCTTAACAATTGGGCAGTTCAAATGTTCAGCTTTATGGCAGATATCGGCCACACTGACAATGCTAGAGAGATGTTTAAGCCTTTCTCTGACTTGGGCATTCTGTCTGAAGTAGCTGTCTTCACCATTGTGATCACTATCTACTCCGGTTCACGGAAGGCCGAGAGTGCACTCAAGGTGTACCACCACATGATAGCCTCTGGTTTCAACCCTGTCTCCTACACTTACACTCAACTCATTTGTGTACTTTCAACAGACTTTTCCAAAGCAAAGTACCTTAGGTATGCCAAGAGGTTTTTTCTGGAACTGTTGGATAAGGGGATGAAGCTCAAGCGTACACCCTTCTGGGATGTTTTGAAGGCCATTGCTTACCGAGAGCCACTGGATAAGTTCAAGGAGTTCATTGAGCAGCTAAAAGCCAGGGGGTTCATTCTTCACGACAATGGGTTTTACTACAACGAAGCTTACCTCGCCGAAGCAAGGGAAACACTGAAGATGCAAGCTCATCTTGTACACAATCACACCGTTGACGAGGATGTTAGAAAATACTTCTTTATGAAGAGCGCCTTCCCTGGCCACATCCAGAAACTGTCGAACAAGATGTACACTGCTTTGATAGTTGACGGAAATTTAGAAGAGGCCGCAAAGTTCAAAAATGAAATTGAGGAGAAGCATGTAGAGCCCATGGTCGTAATCCACACTTCCATTATTAAAGCCTACCTCAAGTTCGACAAGACCAAGGGTGCTCTGGGGGCATACCTAGCCATGTTAGCTGCAGGGGTTTCCCCCAACTCTGTCACTTACACCGTTTTAATCAAGGGACTCAGTGCTGACCCCAATTTTATTGGAGATGCCAAGAAGTATTTGCTTGAGATGATGGACAAGGGAAAGCGACCCAATGCTGCTTCCTTCACTGCGGTCATAGAAGGCTTTGCAAAGCAGGAGGACAAGGCAGCTGAGGAGGAGGGAAAAGAGTGTGTGCGGGTAATGATGGATAAAGGATTTGTGCCTAATGCGAAGGCAATGATGGAGGTTTTAAGGGGTAGACCAACAGCGGTAATTAGAAGGGCCATGAGTATTGTCCTTTCCACCTTGAAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

414

Amino Acids

46.84

Weight (kDa)

8.89

Isoelectric Point (pI)

31.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 84 - 129 7.4e-07 PPR repeat family
PPR_2 PF13041 275 - 321 1e-09 PPR repeat family
TPR_24 PF23276 279 - 363 2.4e-07 Fungal tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1183
AciI CCGC 6 cut(s) 5, 19, 780, 1055, 1120, 1193
AcoI YGGCCR 2 cut(s) 187, 712
AcsI RAATTY 1 cut(s) 766
AcuI CTGAAG 2 cut(s) 267, 650
AfaI GTAC 6 cut(s) 320, 384, 413, 475, 651, 743
AfiI CCNNNNNNNGG 2 cut(s) 291, 618
AgsI TTSAA 8 cut(s) 103, 161, 346, 390, 496, 532, 790, 1234
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 2 cut(s) 557, 709
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 8 cut(s) 171, 254, 466, 550, 602, 641, 911, 1094
AluI AGCT 8 cut(s) 171, 254, 466, 550, 602, 641, 911, 1094
Alw21I GWGCWC 2 cut(s) 310, 886
Alw26I GTCTC 1 cut(s) 358
Alw44I GTGCAC 1 cut(s) 306
AlwNI CAGNNNCTG 1 cut(s) 727
AoxI GGCC 6 cut(s) 187, 297, 498, 712, 777, 1206
ApaLI GTGCAC 1 cut(s) 306
ApeKI GCWGC 4 cut(s) 547, 911, 1040, 1091
ApoI RAATTY 1 cut(s) 766
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 1 cut(s) 704
AspS9I GGNCC 1 cut(s) 1206
AsuHPI GGTGA 1 cut(s) 253
AxyI CCTNAGG 1 cut(s) 416
BaeGI GKGCMC 1 cut(s) 310
BalI TGGCCA 1 cut(s) 714
BanII GRGCYC 1 cut(s) 822
BbsI GAAGAC 1 cut(s) 250
Bbv12I GWGCWC 2 cut(s) 310, 886
BbvCI CCTCAGC 1 cut(s) 1095
BbvI GCAGC 4 cut(s) 559, 898, 1027, 1103
BccI CCATC 3 cut(s) 1009, 1123, 1159
BciT130I CCWGG 2 cut(s) 559, 711
BclI TGATCA 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 358
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 3 cut(s) 12, 204, 899
BfmI CTRYAG 1 cut(s) 912
BfoI RGCGCY 1 cut(s) 705
BisI GCNGC 5 cut(s) 548, 780, 912, 1041, 1092
BlsI GCNGC 5 cut(s) 549, 781, 913, 1042, 1093
Bme1390I CCNGG 2 cut(s) 559, 711
BmgT120I GGNCC 1 cut(s) 1206
BmrFI CCNGG 2 cut(s) 559, 711
BmsI GCATC 3 cut(s) 61, 624, 979
BpiI GAAGAC 1 cut(s) 250
Bpu10I CCTNAGC 1 cut(s) 1095
BpuEI CTTGAG 5 cut(s) 26, 296, 452, 845, 1028
BsaBI GATNNNNATC 1 cut(s) 275
BsaJI CCNNGG 4 cut(s) 558, 709, 822, 876
BsaWI WCCGGW 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 618
Bse1I ACTGG 1 cut(s) 525
Bse21I CCTNAGG 1 cut(s) 416
Bse3DI GCAATG 3 cut(s) 60, 501, 1167
Bse8I GATNNNNATC 1 cut(s) 275
BseBI CCWGG 2 cut(s) 559, 711
BseDI CCNNGG 4 cut(s) 558, 709, 822, 876
BseGI GGATG 5 cut(s) 76, 465, 493, 679, 717
BseJI GATNNNNATC 1 cut(s) 275
BseLI CCNNNNNNNGG 2 cut(s) 291, 618
BseMI GCAATG 3 cut(s) 60, 501, 1167
BseMII CTCAG 2 cut(s) 976, 1086
BseNI ACTGG 1 cut(s) 525
BseRI GAGGAG 3 cut(s) 818, 1112, 1115
BseSI GKGCMC 1 cut(s) 310
BseXI GCAGC 4 cut(s) 559, 898, 1027, 1103
BshFI GGCC 6 cut(s) 189, 299, 500, 714, 779, 1208
BsiHKAI GWGCWC 2 cut(s) 310, 886
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 1 cut(s) 972
BslI CCNNNNNNNGG 2 cut(s) 291, 618
BsmAI GTCTC 1 cut(s) 358
BsmFI GGGAC 1 cut(s) 972
BsmI GAATGC 1 cut(s) 237
BsnI GGCC 6 cut(s) 189, 299, 500, 714, 779, 1208
Bsp1286I GDGCHC 3 cut(s) 310, 822, 886
Bsp1407I TGTACA 2 cut(s) 649, 741
Bsp143I GATC 1 cut(s) 270
Bsp19I CCATGG 1 cut(s) 822
BspACI CCGC 6 cut(s) 5, 19, 780, 1055, 1120, 1193
BspANI GGCC 6 cut(s) 189, 299, 500, 714, 779, 1208
BspCNI CTCAG 2 cut(s) 975, 1087
BspMAI CTGCAG 1 cut(s) 916
BspQI GCTCTTC 1 cut(s) 692
BsrDI GCAATG 3 cut(s) 60, 501, 1167
BsrGI TGTACA 2 cut(s) 649, 741
BsrI ACTGG 1 cut(s) 525
BssECI CCNNGG 4 cut(s) 558, 709, 822, 876
BssMI GATC 1 cut(s) 270
BssT1I CCWWGG 2 cut(s) 822, 876
Bst2UI CCWGG 2 cut(s) 559, 711
Bst4CI ACNGT 6 cut(s) 86, 121, 447, 664, 729, 946
Bst6I CTCTTC 2 cut(s) 692, 768
BstAUI TGTACA 2 cut(s) 649, 741
BstC8I GCNNGC 1 cut(s) 639
BstDEI CTNAG 3 cut(s) 416, 962, 1095
BstDSI CCRYGG 1 cut(s) 822
BstF5I GGATG 5 cut(s) 76, 465, 493, 679, 717
BstH2I RGCGCY 1 cut(s) 705
BstHHI GCGC 1 cut(s) 704
BstKTI GATC 1 cut(s) 273
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 1 cut(s) 270
BstMWI GCNNNNNNNGC 6 cut(s) 305, 608, 817, 890, 899, 908
BstNI CCWGG 2 cut(s) 559, 711
BstNSI RCATGY 1 cut(s) 815
BstSCI CCNGG 2 cut(s) 557, 709
BstSFI CTRYAG 1 cut(s) 912
BstSLI GKGCMC 1 cut(s) 310
BstV1I GCAGC 4 cut(s) 559, 898, 1027, 1103
BstV2I GAAGAC 1 cut(s) 250
Bsu36I CCTNAGG 1 cut(s) 416
BsuRI GGCC 6 cut(s) 189, 299, 500, 714, 779, 1208
BtgI CCRYGG 1 cut(s) 822
BtsCI GGATG 5 cut(s) 76, 465, 493, 679, 717
BtsI GCAGTG 2 cut(s) 744, 1050
BtsIMutI CAGTG 6 cut(s) 192, 518, 626, 744, 970, 1050
Cac8I GCNNGC 1 cut(s) 639
CaiI CAGNNNCTG 1 cut(s) 727
CfoI GCGC 1 cut(s) 704
Cfr13I GGNCC 1 cut(s) 1206
Csp6I GTAC 6 cut(s) 319, 383, 412, 474, 650, 742
CviAII CATG 5 cut(s) 328, 812, 823, 904, 1210
CviQI GTAC 6 cut(s) 319, 383, 412, 474, 650, 742
DdeI CTNAG 3 cut(s) 416, 962, 1095
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
EaeI YGGCCR 2 cut(s) 187, 712
Eam1104I CTCTTC 2 cut(s) 692, 768
EarI CTCTTC 2 cut(s) 692, 768
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 822, 876
Eco24I GRGCYC 1 cut(s) 822
Eco32I GATATC 1 cut(s) 184
Eco57I CTGAAG 2 cut(s) 267, 650
Eco81I CCTNAGG 1 cut(s) 416
EcoRII CCWGG 2 cut(s) 557, 709
EcoRV GATATC 1 cut(s) 184
EcoT14I CCWWGG 2 cut(s) 822, 876
EcoT38I GRGCYC 1 cut(s) 822
ErhI CCWWGG 2 cut(s) 822, 876
FaeI CATG 5 cut(s) 331, 815, 826, 907, 1213
FalI AAGNNNNNCTT 4 cut(s) 630, 662, 689, 721
FaqI GGGAC 1 cut(s) 972
FatI CATG 5 cut(s) 327, 811, 822, 903, 1209
FauI CCCGC 2 cut(s) 26, 1113
FbaI TGATCA 1 cut(s) 270
FblI GTMKAC 1 cut(s) 1183
Fnu4HI GCNGC 5 cut(s) 548, 780, 912, 1041, 1092
FokI GGATG 5 cut(s) 83, 472, 500, 686, 704
FriOI GRGCYC 1 cut(s) 822
Fsp4HI GCNGC 5 cut(s) 548, 780, 912, 1041, 1092
FspBI CTAG 3 cut(s) 12, 204, 899
GlaI GCGC 1 cut(s) 703
GluI GCNGC 5 cut(s) 548, 780, 912, 1041, 1092
HaeII RGCGCY 1 cut(s) 705
HaeIII GGCC 6 cut(s) 189, 299, 500, 714, 779, 1208
HapII CCGG 1 cut(s) 285
HhaI GCGC 1 cut(s) 704
Hin1II CATG 5 cut(s) 331, 815, 826, 907, 1213
Hin6I GCGC 1 cut(s) 702
HinP1I GCGC 1 cut(s) 702
HincII GTYRAC 2 cut(s) 667, 760
HindII GTYRAC 2 cut(s) 667, 760
HindIII AAGCTT 1 cut(s) 600
HinfI GANTC 2 cut(s) 137, 960
HpaII CCGG 1 cut(s) 285
HphI GGTGA 1 cut(s) 253
Hpy188I TCNGA 2 cut(s) 229, 247
Hpy188III TCNNGA 4 cut(s) 43, 440, 575, 721
HpyAV CCTTC 9 cut(s) 52, 289, 490, 490, 715, 1057, 1058, 1150, 1197
HpyCH4III ACNGT 6 cut(s) 86, 121, 447, 664, 729, 946
HpyCH4V TGCA 5 cut(s) 53, 308, 637, 914, 1073
HpyF10VI GCNNNNNNNGC 6 cut(s) 305, 608, 817, 890, 899, 908
HpyF3I CTNAG 3 cut(s) 416, 962, 1095
Hsp92II CATG 5 cut(s) 331, 815, 826, 907, 1213
HspAI GCGC 1 cut(s) 702
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 1 cut(s) 270
LguI GCTCTTC 1 cut(s) 692
Lsp1109I GCAGC 4 cut(s) 559, 898, 1027, 1103
LweI GCATC 3 cut(s) 61, 624, 979
MaeI CTAG 3 cut(s) 12, 204, 899
MaeIII GTNAC 1 cut(s) 934
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MboII GAAGA 5 cut(s) 250, 563, 643, 709, 785
MfeI CAATTG 1 cut(s) 148
MhlI GDGCHC 3 cut(s) 310, 822, 886
MlsI TGGCCA 1 cut(s) 714
MluCI AATT 6 cut(s) 98, 148, 766, 798, 976, 1197
MluNI TGGCCA 1 cut(s) 714
MlyI GAGTC 1 cut(s) 954
MmeI TCCRAC 1 cut(s) 429
Mox20I TGGCCA 1 cut(s) 714
MroXI GAANNNNTTC 1 cut(s) 62
MscI TGGCCA 1 cut(s) 714
MseI TTAA 5 cut(s) 144, 216, 849, 950, 1175
MslI CAYNNNNRTG 2 cut(s) 266, 579
Msp20I TGGCCA 1 cut(s) 714
MspA1I CMGCKG 2 cut(s) 1094, 1193
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 2 cut(s) 559, 711
MunI CAATTG 1 cut(s) 148
Mva1269I GAATGC 1 cut(s) 237
MvaI CCWGG 2 cut(s) 559, 711
MwoI GCNNNNNNNGC 6 cut(s) 305, 608, 817, 890, 899, 908
NcoI CCATGG 1 cut(s) 822
NdeII GATC 1 cut(s) 270
NlaIII CATG 5 cut(s) 331, 815, 826, 907, 1213
NmeAIII GCCGAG 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 934
NspI RCATGY 1 cut(s) 815
OliI CACNNNNGTG 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 692
PctI GAATGC 1 cut(s) 237
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 5 cut(s) 549, 781, 913, 1042, 1093
PleI GAGTC 1 cut(s) 954
PpsI GAGTC 1 cut(s) 954
Psp6I CCWGG 2 cut(s) 557, 709
PspGI CCWGG 2 cut(s) 557, 709
PspPI GGNCC 1 cut(s) 1206
PsrI GAACNNNNNNTAC 2 cut(s) 725, 757
PstI CTGCAG 1 cut(s) 916
PstNI CAGNNNCTG 1 cut(s) 727
PvuII CAGCTG 1 cut(s) 1094
RsaI GTAC 6 cut(s) 320, 384, 413, 475, 651, 743
RsaNI GTAC 6 cut(s) 319, 383, 412, 474, 650, 742
RseI CAYNNNNRTG 2 cut(s) 266, 579
SapI GCTCTTC 1 cut(s) 692
SaqAI TTAA 5 cut(s) 144, 216, 849, 950, 1175
SatI GCNGC 5 cut(s) 548, 780, 912, 1041, 1092
Sau3AI GATC 1 cut(s) 270
Sau96I GGNCC 1 cut(s) 1206
SchI GAGTC 1 cut(s) 954
ScrFI CCNGG 2 cut(s) 559, 711
SduI GDGCHC 3 cut(s) 310, 822, 886
SfaNI GCATC 3 cut(s) 61, 624, 979
SfcI CTRYAG 1 cut(s) 912
SmiMI CAYNNNNRTG 2 cut(s) 266, 579
SmlI CTYRAG 5 cut(s) 41, 311, 467, 860, 1007
SmoI CTYRAG 5 cut(s) 41, 311, 467, 860, 1007
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 6 cut(s) 98, 148, 766, 798, 976, 1197
SsiI CCGC 6 cut(s) 5, 19, 780, 1055, 1120, 1193
SspMI CTAG 3 cut(s) 12, 204, 899
StyD4I CCNGG 2 cut(s) 557, 709
StyI CCWWGG 2 cut(s) 822, 876
TaaI ACNGT 6 cut(s) 86, 121, 447, 664, 729, 946
TaqI TCGA 3 cut(s) 66, 731, 867
TasI AATT 6 cut(s) 98, 148, 766, 798, 976, 1197
TatI WGTACW 3 cut(s) 382, 649, 741
TauI GCSGC 1 cut(s) 782
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 5 cut(s) 144, 216, 849, 950, 1175
Tru9I TTAA 5 cut(s) 144, 216, 849, 950, 1175
TscAI CASTG 6 cut(s) 199, 525, 633, 751, 970, 1057
TseFI GTSAC 1 cut(s) 934
TseI GCWGC 4 cut(s) 547, 911, 1040, 1091
Tsp45I GTSAC 1 cut(s) 934
TspDTI ATGAA 6 cut(s) 71, 476, 529, 556, 710, 810
TspGWI ACGGA 2 cut(s) 307, 777
TspRI CASTG 6 cut(s) 199, 525, 633, 751, 970, 1057
VneI GTGCAC 1 cut(s) 306
XapI RAATTY 1 cut(s) 766
XceI RCATGY 1 cut(s) 815
XcmI CCANNNNNNNNNTGG 1 cut(s) 883
XmiI GTMKAC 1 cut(s) 1183
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 3 cut(s) 12, 204, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.