Rmu_sc0036318.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036318.1
OG0000101
Physical Location & Seq
Reverse (-)
2 .. 774
773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036318.1_g000001.1.cds

Sequence Viewer

Length: 773 bp
atggcggaaactagttcccccaattcttctgctgatgacctcaagaaccatgtaatgaagattttcaaggaagccaccaaagactgtgaggacgagtgcttgaaaagagtatttggcaccattgggaggagctacgattcccttaacgattattcgattatgttgttcaatactatggcagataccggcatcattgacagagctagagagatgtttaagcctgtctctgacttgggcattctgtctccagtggctgtcttcacctttgtgattatgctctacgccggtgagcgcaaggccaagagcgctctcaaggttttccagcacatgatagccactggtgtcaaccccgcctgctacacttatgttcaactcatcactgtacttgcaacagacttttccaatgtaaagttccttaggtatgccaagaagtattttcttgaaatgttggataaggggatgaagcccagtcctacacccttctggaagattatggaggccattgcctaccgagagccagtggagaaggccaaggagttccttgagcagataaaagccaaggggttcatgccttccgacagtggttttcactacaaagaagcctacctcgccgaaggaatgcaaacactgaagatgtatgctgatcttgtccacaatgagaccattgacaaggatgttagaaagtacttctatgtgttgcgcgcctgccctggccacgctgaaaaactggggagcataatgtacagtgctctgatagatgatggaaatgtaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

257

Amino Acids

29.16

Weight (kDa)

6.96

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 116
AccII CGCG 1 cut(s) 702
AciI CCGC 2 cut(s) 5, 351
AcoI YGGCCR 1 cut(s) 712
AcuI CTGAAG 1 cut(s) 650
AfaI GTAC 3 cut(s) 384, 686, 743
AfeI AGCGCT 1 cut(s) 307
AfiI CCNNNNNNNGG 1 cut(s) 126
AgsI TTSAA 5 cut(s) 67, 103, 169, 371, 443
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 1 cut(s) 709
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 2 cut(s) 132, 203
AluI AGCT 2 cut(s) 132, 203
Alw21I GWGCWC 1 cut(s) 751
Alw26I GTCTC 3 cut(s) 229, 249, 653
AlwNI CAGNNNCTG 1 cut(s) 254
Aor51HI AGCGCT 1 cut(s) 307
AoxI GGCC 4 cut(s) 297, 498, 528, 712
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 4 cut(s) 294, 308, 702, 704
AsuHPI GGTGA 2 cut(s) 253, 299
AxyI CCTNAGG 1 cut(s) 416
BalI TGGCCA 1 cut(s) 714
BanI GGYRCC 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 751
BccI CCATC 1 cut(s) 755
BciT130I CCWGG 1 cut(s) 711
BcoDI GTCTC 3 cut(s) 229, 249, 653
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 204
BfoI RGCGCY 1 cut(s) 309
BmcAI AGTACT 1 cut(s) 686
Bme1390I CCNGG 1 cut(s) 711
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 711
BmrI ACTGGG 2 cut(s) 462, 737
BmsI GCATC 1 cut(s) 198
BmuI ACTGGG 2 cut(s) 462, 737
BpiI GAAGAC 1 cut(s) 250
BpmI CTGGAG 1 cut(s) 231
BpuEI CTTGAG 3 cut(s) 26, 296, 563
BsaI GGTCTC 1 cut(s) 653
BsaJI CCNNGG 3 cut(s) 531, 558, 709
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse118I RCCGGY 2 cut(s) 185, 284
Bse1I ACTGG 5 cut(s) 248, 343, 468, 518, 732
Bse21I CCTNAGG 1 cut(s) 416
Bse3DI GCAATG 1 cut(s) 501
BseBI CCWGG 1 cut(s) 711
BseDI CCNNGG 3 cut(s) 531, 558, 709
BseGI GGATG 2 cut(s) 465, 679
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMI GCAATG 1 cut(s) 501
BseNI ACTGG 5 cut(s) 248, 343, 468, 518, 732
BsePI GCGCGC 1 cut(s) 700
BseRI GAGGAG 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 702
BshFI GGCC 4 cut(s) 299, 500, 530, 714
BshNI GGYRCC 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 751
BsiSI CCGG 2 cut(s) 186, 285
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 3 cut(s) 229, 249, 653
BsmI GAATGC 2 cut(s) 237, 624
BsnI GGCC 4 cut(s) 299, 500, 530, 714
Bso31I GGTCTC 1 cut(s) 653
Bsp1286I GDGCHC 1 cut(s) 751
Bsp1407I TGTACA 1 cut(s) 741
Bsp143I GATC 1 cut(s) 643
BspACI CCGC 2 cut(s) 5, 351
BspANI GGCC 4 cut(s) 299, 500, 530, 714
BspFNI CGCG 1 cut(s) 702
BspLI GGNNCC 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 653
BsrDI GCAATG 1 cut(s) 501
BsrFI RCCGGY 2 cut(s) 185, 284
BsrGI TGTACA 1 cut(s) 741
BsrI ACTGG 5 cut(s) 248, 343, 468, 518, 732
BssAI RCCGGY 2 cut(s) 185, 284
BssECI CCNNGG 3 cut(s) 531, 558, 709
BssHII GCGCGC 1 cut(s) 700
BssMI GATC 1 cut(s) 643
BssT1I CCWWGG 2 cut(s) 531, 558
Bst2UI CCWGG 1 cut(s) 711
Bst4CI ACNGT 4 cut(s) 86, 382, 581, 746
BstAUI TGTACA 1 cut(s) 741
BstC8I GCNNGC 3 cut(s) 355, 702, 706
BstDEI CTNAG 1 cut(s) 416
BstF5I GGATG 2 cut(s) 465, 679
BstFNI CGCG 1 cut(s) 702
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 4 cut(s) 294, 308, 702, 704
BstKTI GATC 1 cut(s) 646
BstMAI GTCTC 3 cut(s) 229, 249, 653
BstMBI GATC 1 cut(s) 643
BstMWI GCNNNNNNNGC 2 cut(s) 305, 608
BstNI CCWGG 1 cut(s) 711
BstSCI CCNGG 1 cut(s) 709
BstUI CGCG 1 cut(s) 702
BstV2I GAAGAC 1 cut(s) 250
Bsu36I CCTNAGG 1 cut(s) 416
BsuRI GGCC 4 cut(s) 299, 500, 530, 714
BtsCI GGATG 2 cut(s) 465, 679
BtsIMutI CAGTG 7 cut(s) 255, 336, 378, 525, 586, 626, 751
Cac8I GCNNGC 3 cut(s) 355, 702, 706
CaiI CAGNNNCTG 1 cut(s) 254
CfoI GCGC 4 cut(s) 294, 308, 702, 704
Cfr10I RCCGGY 2 cut(s) 185, 284
Csp6I GTAC 3 cut(s) 383, 685, 742
CviAII CATG 3 cut(s) 50, 328, 568
CviQI GTAC 3 cut(s) 383, 685, 742
DdeI CTNAG 1 cut(s) 416
DpnI GATC 1 cut(s) 645
DpnII GATC 1 cut(s) 643
EaeI YGGCCR 1 cut(s) 712
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 531, 558
Eco31I GGTCTC 1 cut(s) 653
Eco47III AGCGCT 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 650
Eco81I CCTNAGG 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 709
EcoT14I CCWWGG 2 cut(s) 531, 558
ErhI CCWWGG 2 cut(s) 531, 558
FaeI CATG 3 cut(s) 53, 331, 571
FatI CATG 3 cut(s) 49, 327, 567
FauI CCCGC 1 cut(s) 358
FokI GGATG 2 cut(s) 472, 686
FspBI CTAG 2 cut(s) 12, 204
GlaI GCGC 4 cut(s) 293, 307, 701, 703
GsuI CTGGAG 1 cut(s) 231
HaeII RGCGCY 1 cut(s) 309
HaeIII GGCC 4 cut(s) 299, 500, 530, 714
HapII CCGG 2 cut(s) 186, 285
HhaI GCGC 4 cut(s) 294, 308, 702, 704
Hin1II CATG 3 cut(s) 53, 331, 571
Hin6I GCGC 4 cut(s) 292, 306, 700, 702
HinP1I GCGC 4 cut(s) 292, 306, 700, 702
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 1 cut(s) 137
HpaII CCGG 2 cut(s) 186, 285
HphI GGTGA 2 cut(s) 253, 299
Hpy166II GTNNAC 2 cut(s) 346, 652
Hpy188I TCNGA 3 cut(s) 229, 577, 753
Hpy188III TCNNGA 3 cut(s) 43, 440, 484
Hpy8I GTNNAC 2 cut(s) 346, 652
HpyAV CCTTC 4 cut(s) 490, 520, 582, 608
HpyCH4III ACNGT 4 cut(s) 86, 382, 581, 746
HpyCH4V TGCA 2 cut(s) 389, 622
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 608
HpyF3I CTNAG 1 cut(s) 416
Hsp92II CATG 3 cut(s) 53, 331, 571
HspAI GCGC 4 cut(s) 292, 306, 700, 702
Kzo9I GATC 1 cut(s) 643
LmnI GCTCC 2 cut(s) 129, 732
LweI GCATC 1 cut(s) 198
MaeI CTAG 2 cut(s) 12, 204
MalI GATC 1 cut(s) 645
MboI GATC 1 cut(s) 643
MboII GAAGA 5 cut(s) 18, 70, 250, 499, 643
MhlI GDGCHC 1 cut(s) 751
MlsI TGGCCA 1 cut(s) 714
MluCI AATT 1 cut(s) 22
MluNI TGGCCA 1 cut(s) 714
MmeI TCCRAC 2 cut(s) 429, 600
MnlI CCTC 5 cut(s) 50, 82, 120, 490, 617
Mox20I TGGCCA 1 cut(s) 714
MroXI GAANNNNTTC 1 cut(s) 62
MscI TGGCCA 1 cut(s) 714
MseI TTAA 2 cut(s) 144, 216
MslI CAYNNNNRTG 1 cut(s) 266
Msp20I TGGCCA 1 cut(s) 714
MspI CCGG 2 cut(s) 186, 285
MspR9I CCNGG 1 cut(s) 711
Mva1269I GAATGC 2 cut(s) 237, 624
MvaI CCWGG 1 cut(s) 711
MvnI CGCG 1 cut(s) 702
MwoI GCNNNNNNNGC 2 cut(s) 305, 608
NdeII GATC 1 cut(s) 643
NlaIII CATG 3 cut(s) 53, 331, 571
NlaIV GGNNCC 1 cut(s) 118
OliI CACNNNNGTG 1 cut(s) 266
PauI GCGCGC 1 cut(s) 700
PctI GAATGC 2 cut(s) 237, 624
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 709
PspGI CCWGG 1 cut(s) 709
PspN4I GGNNCC 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 254
PteI GCGCGC 1 cut(s) 700
RsaI GTAC 3 cut(s) 384, 686, 743
RsaNI GTAC 3 cut(s) 383, 685, 742
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 2 cut(s) 144, 216
Sau3AI GATC 1 cut(s) 643
ScaI AGTACT 1 cut(s) 686
ScrFI CCNGG 1 cut(s) 711
SduI GDGCHC 1 cut(s) 751
SetI ASST 7 cut(s) 42, 134, 205, 266, 318, 422, 609
SfaNI GCATC 1 cut(s) 198
SgrAI CRCCGGYG 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 3 cut(s) 41, 311, 542
SmoI CTYRAG 3 cut(s) 41, 311, 542
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 1 cut(s) 22
SsiI CCGC 2 cut(s) 5, 351
SspMI CTAG 2 cut(s) 12, 204
StyD4I CCNGG 1 cut(s) 709
StyI CCWWGG 2 cut(s) 531, 558
TaaI ACNGT 4 cut(s) 86, 382, 581, 746
TaqI TCGA 1 cut(s) 155
TasI AATT 1 cut(s) 22
TatI WGTACW 3 cut(s) 382, 684, 741
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 2 cut(s) 144, 216
Tru9I TTAA 2 cut(s) 144, 216
TscAI CASTG 7 cut(s) 255, 343, 385, 525, 586, 633, 751
TspDTI ATGAA 3 cut(s) 71, 476, 556
TspRI CASTG 7 cut(s) 255, 343, 385, 525, 586, 633, 751
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 2 cut(s) 12, 204
ZrmI AGTACT 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.