Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 1 - 77 | 1.2e-18 | NB-ARC domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 863 |
| AccB1I | GGYRCC | 1 cut(s) | 863 |
| AccII | CGCG | 2 cut(s) | 172, 363 |
| AciI | CCGC | 5 cut(s) | 170, 172, 426, 624, 903 |
| AclWI | GGATC | 1 cut(s) | 140 |
| AcoI | YGGCCR | 2 cut(s) | 911, 931 |
| AcsI | RAATTY | 1 cut(s) | 538 |
| AfaI | GTAC | 2 cut(s) | 556, 865 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 229, 432 |
| AgsI | TTSAA | 4 cut(s) | 371, 742, 793, 802 |
| AjnI | CCWGG | 2 cut(s) | 223, 259 |
| AluBI | AGCT | 3 cut(s) | 71, 195, 574 |
| AluI | AGCT | 3 cut(s) | 71, 195, 574 |
| Alw21I | GWGCWC | 2 cut(s) | 315, 400 |
| Alw26I | GTCTC | 1 cut(s) | 415 |
| AlwI | GGATC | 1 cut(s) | 140 |
| AoxI | GGCC | 2 cut(s) | 911, 931 |
| ApeKI | GCWGC | 2 cut(s) | 71, 471 |
| ApoI | RAATTY | 1 cut(s) | 538 |
| Asp718I | GGTACC | 1 cut(s) | 863 |
| AspLEI | GCGC | 1 cut(s) | 363 |
| AsuHPI | GGTGA | 1 cut(s) | 115 |
| BalI | TGGCCA | 1 cut(s) | 933 |
| BanI | GGYRCC | 1 cut(s) | 863 |
| BauI | CACGAG | 1 cut(s) | 569 |
| Bbv12I | GWGCWC | 2 cut(s) | 315, 400 |
| BbvI | GCAGC | 2 cut(s) | 58, 483 |
| BciT130I | CCWGG | 2 cut(s) | 225, 261 |
| BclI | TGATCA | 1 cut(s) | 390 |
| BcoDI | GTCTC | 1 cut(s) | 415 |
| BfaI | CTAG | 1 cut(s) | 81 |
| BfmI | CTRYAG | 1 cut(s) | 749 |
| BisI | GCNGC | 5 cut(s) | 72, 170, 426, 472, 624 |
| BlsI | GCNGC | 5 cut(s) | 73, 171, 427, 473, 625 |
| Bme1390I | CCNGG | 2 cut(s) | 225, 261 |
| BmiI | GGNNCC | 1 cut(s) | 865 |
| BmrFI | CCNGG | 2 cut(s) | 225, 261 |
| BmsI | GCATC | 2 cut(s) | 498, 590 |
| BpuEI | CTTGAG | 1 cut(s) | 384 |
| BsaJI | CCNNGG | 4 cut(s) | 149, 170, 223, 431 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 229, 432 |
| BseBI | CCWGG | 2 cut(s) | 225, 261 |
| BseDI | CCNNGG | 4 cut(s) | 149, 170, 223, 431 |
| BseGI | GGATG | 7 cut(s) | 64, 180, 238, 489, 581, 615, 792 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 229, 432 |
| BseMII | CTCAG | 1 cut(s) | 517 |
| BseXI | GCAGC | 2 cut(s) | 58, 483 |
| BseYI | CCCAGC | 1 cut(s) | 648 |
| Bsh1236I | CGCG | 2 cut(s) | 172, 363 |
| BshFI | GGCC | 2 cut(s) | 913, 933 |
| BshNI | GGYRCC | 1 cut(s) | 863 |
| BsiHKAI | GWGCWC | 2 cut(s) | 315, 400 |
| BsiSI | CCGG | 1 cut(s) | 914 |
| BslFI | GGGAC | 1 cut(s) | 689 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 229, 432 |
| BsmAI | GTCTC | 1 cut(s) | 415 |
| BsmFI | GGGAC | 1 cut(s) | 689 |
| BsmI | GAATGC | 1 cut(s) | 156 |
| BsnI | GGCC | 2 cut(s) | 913, 933 |
| Bsp1286I | GDGCHC | 2 cut(s) | 315, 400 |
| Bsp143I | GATC | 5 cut(s) | 145, 390, 403, 643, 870 |
| BspACI | CCGC | 5 cut(s) | 170, 172, 426, 624, 903 |
| BspANI | GGCC | 2 cut(s) | 913, 933 |
| BspCNI | CTCAG | 1 cut(s) | 516 |
| BspFNI | CGCG | 2 cut(s) | 172, 363 |
| BspLI | GGNNCC | 1 cut(s) | 865 |
| BspPI | GGATC | 1 cut(s) | 140 |
| BspT107I | GGYRCC | 1 cut(s) | 863 |
| BssECI | CCNNGG | 4 cut(s) | 149, 170, 223, 431 |
| BssMI | GATC | 5 cut(s) | 145, 390, 403, 643, 870 |
| BssSI | CACGAG | 1 cut(s) | 569 |
| BssT1I | CCWWGG | 2 cut(s) | 149, 431 |
| Bst2BI | CACGAG | 1 cut(s) | 569 |
| Bst2UI | CCWGG | 2 cut(s) | 225, 261 |
| Bst4CI | ACNGT | 1 cut(s) | 349 |
| Bst6I | CTCTTC | 1 cut(s) | 259 |
| BstC8I | GCNNGC | 2 cut(s) | 365, 612 |
| BstDEI | CTNAG | 4 cut(s) | 421, 503, 704, 815 |
| BstDSI | CCRYGG | 1 cut(s) | 170 |
| BstEII | GGTNACC | 1 cut(s) | 109 |
| BstF5I | GGATG | 7 cut(s) | 64, 180, 238, 489, 581, 615, 792 |
| BstFNI | CGCG | 2 cut(s) | 172, 363 |
| BstHHI | GCGC | 1 cut(s) | 363 |
| BstKTI | GATC | 5 cut(s) | 148, 393, 406, 646, 873 |
| BstMAI | GTCTC | 1 cut(s) | 415 |
| BstMBI | GATC | 5 cut(s) | 145, 390, 403, 643, 870 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 140, 422, 620, 900 |
| BstNI | CCWGG | 2 cut(s) | 225, 261 |
| BstPI | GGTNACC | 1 cut(s) | 109 |
| BstSCI | CCNGG | 2 cut(s) | 223, 259 |
| BstSFI | CTRYAG | 1 cut(s) | 749 |
| BstUI | CGCG | 2 cut(s) | 172, 363 |
| BstV1I | GCAGC | 2 cut(s) | 58, 483 |
| BstX2I | RGATCY | 1 cut(s) | 145 |
| BstYI | RGATCY | 1 cut(s) | 145 |
| BsuRI | GGCC | 2 cut(s) | 913, 933 |
| BtgI | CCRYGG | 1 cut(s) | 170 |
| BtsCI | GGATG | 7 cut(s) | 64, 180, 238, 489, 581, 615, 792 |
| BtsIMutI | CAGTG | 2 cut(s) | 354, 400 |
| Cac8I | GCNNGC | 2 cut(s) | 365, 612 |
| CfoI | GCGC | 1 cut(s) | 363 |
| Cfr42I | CCGCGG | 1 cut(s) | 173 |
| Csp6I | GTAC | 2 cut(s) | 555, 864 |
| CviAII | CATG | 5 cut(s) | 164, 439, 494, 629, 868 |
| CviJI | RGCY | 8 cut(s) | 71, 169, 195, 425, 574, 610, 913, 933 |
| CviKI_1 | RGCY | 8 cut(s) | 71, 169, 195, 425, 574, 610, 913, 933 |
| CviQI | GTAC | 2 cut(s) | 555, 864 |
| DdeI | CTNAG | 4 cut(s) | 421, 503, 704, 815 |
| DpnI | GATC | 5 cut(s) | 147, 392, 405, 645, 872 |
| DpnII | GATC | 5 cut(s) | 145, 390, 403, 643, 870 |
| EaeI | YGGCCR | 2 cut(s) | 911, 931 |
| Eam1104I | CTCTTC | 1 cut(s) | 259 |
| EarI | CTCTTC | 1 cut(s) | 259 |
| EciI | GGCGGA | 1 cut(s) | 918 |
| Eco130I | CCWWGG | 2 cut(s) | 149, 431 |
| Eco32I | GATATC | 1 cut(s) | 238 |
| Eco91I | GGTNACC | 1 cut(s) | 109 |
| EcoO65I | GGTNACC | 1 cut(s) | 109 |
| EcoRII | CCWGG | 2 cut(s) | 223, 259 |
| EcoRV | GATATC | 1 cut(s) | 238 |
| EcoT14I | CCWWGG | 2 cut(s) | 149, 431 |
| ErhI | CCWWGG | 2 cut(s) | 149, 431 |
| FaeI | CATG | 5 cut(s) | 167, 442, 497, 632, 871 |
| FaqI | GGGAC | 1 cut(s) | 689 |
| FatI | CATG | 5 cut(s) | 163, 438, 493, 628, 867 |
| FbaI | TGATCA | 1 cut(s) | 390 |
| Fnu4HI | GCNGC | 5 cut(s) | 72, 170, 426, 472, 624 |
| FokI | GGATG | 7 cut(s) | 71, 187, 245, 476, 568, 602, 799 |
| Fsp4HI | GCNGC | 5 cut(s) | 72, 170, 426, 472, 624 |
| FspBI | CTAG | 1 cut(s) | 81 |
| GlaI | GCGC | 1 cut(s) | 362 |
| GluI | GCNGC | 5 cut(s) | 72, 170, 426, 472, 624 |
| GsaI | CCCAGC | 1 cut(s) | 652 |
| HaeIII | GGCC | 2 cut(s) | 913, 933 |
| HapII | CCGG | 1 cut(s) | 914 |
| HhaI | GCGC | 1 cut(s) | 363 |
| Hin1II | CATG | 5 cut(s) | 167, 442, 497, 632, 871 |
| Hin6I | GCGC | 1 cut(s) | 361 |
| HinP1I | GCGC | 1 cut(s) | 361 |
| HincII | GTYRAC | 1 cut(s) | 180 |
| HindII | GTYRAC | 1 cut(s) | 180 |
| HinfI | GANTC | 2 cut(s) | 442, 811 |
| HpaI | GTTAAC | 1 cut(s) | 180 |
| HpaII | CCGG | 1 cut(s) | 914 |
| HphI | GGTGA | 1 cut(s) | 115 |
| Hpy166II | GTNNAC | 1 cut(s) | 180 |
| Hpy188I | TCNGA | 4 cut(s) | 317, 506, 701, 781 |
| Hpy188III | TCNNGA | 3 cut(s) | 29, 401, 603 |
| Hpy8I | GTNNAC | 1 cut(s) | 180 |
| HpyAV | CCTTC | 1 cut(s) | 600 |
| HpyCH4III | ACNGT | 1 cut(s) | 349 |
| HpyCH4V | TGCA | 4 cut(s) | 74, 143, 416, 438 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 140, 422, 620, 900 |
| HpyF3I | CTNAG | 4 cut(s) | 421, 503, 704, 815 |
| Hsp92II | CATG | 5 cut(s) | 167, 442, 497, 632, 871 |
| HspAI | GCGC | 1 cut(s) | 361 |
| KpnI | GGTACC | 1 cut(s) | 867 |
| Ksp22I | TGATCA | 1 cut(s) | 390 |
| KspAI | GTTAAC | 1 cut(s) | 180 |
| KspI | CCGCGG | 1 cut(s) | 173 |
| Kzo9I | GATC | 5 cut(s) | 145, 390, 403, 643, 870 |
| LmnI | GCTCC | 2 cut(s) | 153, 358 |
| LpnPI | CCDG | 8 cut(s) | 5, 210, 237, 246, 273, 431, 634, 927 |
| Lsp1109I | GCAGC | 2 cut(s) | 58, 483 |
| LweI | GCATC | 2 cut(s) | 498, 590 |
| MaeI | CTAG | 1 cut(s) | 81 |
| MaeIII | GTNAC | 1 cut(s) | 109 |
| MalI | GATC | 5 cut(s) | 147, 392, 405, 645, 872 |
| MboI | GATC | 5 cut(s) | 145, 390, 403, 643, 870 |
| MboII | GAAGA | 3 cut(s) | 276, 918, 933 |
| MflI | RGATCY | 1 cut(s) | 145 |
| MhlI | GDGCHC | 2 cut(s) | 315, 400 |
| MlsI | TGGCCA | 1 cut(s) | 933 |
| MluCI | AATT | 3 cut(s) | 306, 538, 681 |
| MluNI | TGGCCA | 1 cut(s) | 933 |
| Mox20I | TGGCCA | 1 cut(s) | 933 |
| MscI | TGGCCA | 1 cut(s) | 933 |
| MseI | TTAA | 6 cut(s) | 66, 179, 279, 477, 680, 943 |
| Msp20I | TGGCCA | 1 cut(s) | 933 |
| MspA1I | CMGCKG | 1 cut(s) | 172 |
| MspI | CCGG | 1 cut(s) | 914 |
| MspR9I | CCNGG | 2 cut(s) | 225, 261 |
| Mva1269I | GAATGC | 1 cut(s) | 156 |
| MvaI | CCWGG | 2 cut(s) | 225, 261 |
| MvnI | CGCG | 2 cut(s) | 172, 363 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 140, 422, 620, 900 |
| NdeII | GATC | 5 cut(s) | 145, 390, 403, 643, 870 |
| NlaIII | CATG | 5 cut(s) | 167, 442, 497, 632, 871 |
| NlaIV | GGNNCC | 1 cut(s) | 865 |
| PctI | GAATGC | 1 cut(s) | 156 |
| PfeI | GAWTC | 2 cut(s) | 442, 811 |
| PkrI | GCNGC | 5 cut(s) | 73, 171, 427, 473, 625 |
| Psp6I | CCWGG | 2 cut(s) | 223, 259 |
| PspEI | GGTNACC | 1 cut(s) | 109 |
| PspFI | CCCAGC | 1 cut(s) | 648 |
| PspGI | CCWGG | 2 cut(s) | 223, 259 |
| PspN4I | GGNNCC | 1 cut(s) | 865 |
| PsuI | RGATCY | 1 cut(s) | 145 |
| RsaI | GTAC | 2 cut(s) | 556, 865 |
| RsaNI | GTAC | 2 cut(s) | 555, 864 |
| SacII | CCGCGG | 1 cut(s) | 173 |
| SaqAI | TTAA | 6 cut(s) | 66, 179, 279, 477, 680, 943 |
| SatI | GCNGC | 5 cut(s) | 72, 170, 426, 472, 624 |
| Sau3AI | GATC | 5 cut(s) | 145, 390, 403, 643, 870 |
| ScrFI | CCNGG | 2 cut(s) | 225, 261 |
| SduI | GDGCHC | 2 cut(s) | 315, 400 |
| SfaNI | GCATC | 2 cut(s) | 498, 590 |
| SfcI | CTRYAG | 1 cut(s) | 749 |
| Sfr303I | CCGCGG | 1 cut(s) | 173 |
| SgrBI | CCGCGG | 1 cut(s) | 173 |
| SmlI | CTYRAG | 1 cut(s) | 399 |
| SmoI | CTYRAG | 1 cut(s) | 399 |
| Sse9I | AATT | 3 cut(s) | 306, 538, 681 |
| SsiI | CCGC | 5 cut(s) | 170, 172, 426, 624, 903 |
| SspMI | CTAG | 1 cut(s) | 81 |
| StyD4I | CCNGG | 2 cut(s) | 223, 259 |
| StyI | CCWWGG | 2 cut(s) | 149, 431 |
| TaaI | ACNGT | 1 cut(s) | 349 |
| TaqI | TCGA | 2 cut(s) | 593, 604 |
| TasI | AATT | 3 cut(s) | 306, 538, 681 |
| TauI | GCSGC | 3 cut(s) | 172, 428, 626 |
| TfiI | GAWTC | 2 cut(s) | 442, 811 |
| Tru1I | TTAA | 6 cut(s) | 66, 179, 279, 477, 680, 943 |
| Tru9I | TTAA | 6 cut(s) | 66, 179, 279, 477, 680, 943 |
| TscAI | CASTG | 2 cut(s) | 354, 400 |
| TseI | GCWGC | 2 cut(s) | 71, 471 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 2 cut(s) | 354, 400 |
| XapI | RAATTY | 1 cut(s) | 538 |
| XspI | CTAG | 1 cut(s) | 81 |