RLG00000007792

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000101
Physical Location & Seq
Reverse (-)
21165201 .. 21166178
978 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007792

Sequence Viewer

Length: 819 bp
ATGGCTCTCAACGTTTACAGGTACATGTTAACCATTGGAGTTACTCCCAGCAGCTACACATACAATTTACTCATCGTGGGACTTACGGTTGCAGCTCAATCGGACGCTAATATGCTTGGTGTTGCCAAGAAGTGTTTTGTAGAAATGTTGGATAAGGGCAGGAAGCCCAATTTTGATGTTTACTGTAGGGTGTTTGAAGGCATTGCCTGTGTGGAGAGTCGGGACACCCAGAAACAGGCAGATAATATGTACAAGGCTTTACTTGATGATGGAAATAGACACGAGGTGTGGATGCTCTTTCAGAAGCAGTACCATGAGTCGAGCGTGCACCACATGGTTGTCCTGTATACCTGTTTTATTGAAATCTTCATCAATGCTGGCAAGGCCAAGGGTGCTTTGGAGGTGTACCAGCGCATGTTGGATGATGGGTATTCCCCGTGCTCCTACACATACTCTATTTTGATCAAGGCACTAGCTGCTGACCCCAGCTTCTTTGGAGATGCAAAGAAGTACTTTCTTGAGATGATGGAGAAAGGCATGCGGCCCAATGCTGCTACCTACACTGCGGTGTTAGAGGGGTTTGCGAGGCAGGAGGACAATGCAGCTGGGGAGGAAGAAAAAAAAGGTTGTGAAGGTGATGATGGGCAAGGGGTTTGTGCCTTACGTCGAGGATGTAAGGAAGGTTCTAAGGGGGAAAACAGCACCTGTAGTTACAACGGTCATGGACATCATCTCTTCCAAGTGGAAAGACTGGATGGTTTATCAATGTTTGCACTCTCAACAGCTAATATTTGGATTAGGGTTCAGATATGGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

273

Amino Acids

30.53

Weight (kDa)

6.0

Isoelectric Point (pI)

26.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 113 - 159 1.7e-10 PPR repeat family
PPR_3 PF13812 113 - 158 8.6e-06 Pentatricopeptide repeat domain
TPR_24 PF23276 114 - 200 2e-06 Fungal tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 347
AciI CCGC 2 cut(s) 541, 566
AclI AACGTT 1 cut(s) 12
AdeI CACNNNGTG 1 cut(s) 286
AfaI GTAC 5 cut(s) 23, 251, 311, 407, 512
AfiI CCNNNNNNNGG 1 cut(s) 235
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 2 cut(s) 197, 362
AleI CACNNNNGTG 1 cut(s) 566
AluBI AGCT 7 cut(s) 54, 95, 476, 489, 605, 785, 816
AluI AGCT 7 cut(s) 54, 95, 476, 489, 605, 785, 816
Alw21I GWGCWC 2 cut(s) 330, 443
Alw44I GTGCAC 1 cut(s) 326
AlwNI CAGNNNCTG 1 cut(s) 705
AoxI GGCC 2 cut(s) 384, 542
ApaLI GTGCAC 1 cut(s) 326
ApeKI GCWGC 5 cut(s) 51, 92, 476, 551, 602
AspLEI GCGC 1 cut(s) 414
AspS9I GGNCC 1 cut(s) 543
AsuHPI GGTGA 1 cut(s) 647
BaeGI GKGCMC 1 cut(s) 330
BauI CACGAG 1 cut(s) 281
Bbv12I GWGCWC 2 cut(s) 330, 443
BbvI GCAGC 5 cut(s) 63, 104, 463, 538, 614
BccI CCATC 5 cut(s) 263, 419, 520, 635, 749
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BclI TGATCA 1 cut(s) 462
BfaI CTAG 1 cut(s) 473
BfmI CTRYAG 2 cut(s) 184, 706
BisI GCNGC 6 cut(s) 52, 93, 477, 542, 552, 603
BlsI GCNGC 6 cut(s) 53, 94, 478, 543, 553, 604
BmcAI AGTACT 1 cut(s) 512
BmgT120I GGNCC 1 cut(s) 543
BmsI GCATC 2 cut(s) 282, 490
BpuEI CTTGAG 1 cut(s) 539
BsaJI CCNNGG 1 cut(s) 387
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 756
Bse3DI GCAATG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 4 cut(s) 297, 427, 677, 760
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 756
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 5 cut(s) 63, 104, 463, 538, 614
BseYI CCCAGC 3 cut(s) 47, 485, 605
BshFI GGCC 2 cut(s) 386, 544
BsiHKAI GWGCWC 2 cut(s) 330, 443
BslFI GGGAC 2 cut(s) 93, 236
BslI CCNNNNNNNGG 1 cut(s) 235
BsmFI GGGAC 2 cut(s) 93, 236
BsnI GGCC 2 cut(s) 386, 544
Bsp1286I GDGCHC 2 cut(s) 330, 443
Bsp1407I TGTACA 1 cut(s) 249
Bsp143I GATC 1 cut(s) 462
BspACI CCGC 2 cut(s) 541, 566
BspANI GGCC 2 cut(s) 386, 544
BsrDI GCAATG 1 cut(s) 201
BsrGI TGTACA 1 cut(s) 249
BsrI ACTGG 1 cut(s) 756
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 1 cut(s) 462
BssNAI GTATAC 1 cut(s) 348
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 387
Bst1107I GTATAC 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 281
Bst4CI ACNGT 3 cut(s) 88, 185, 719
Bst6I CTCTTC 1 cut(s) 740
BstAPI GCANNNNNTGC 1 cut(s) 476
BstAUI TGTACA 1 cut(s) 249
BstC8I GCNNGC 3 cut(s) 326, 379, 539
BstDEI CTNAG 1 cut(s) 687
BstF5I GGATG 4 cut(s) 297, 427, 677, 760
BstHHI GCGC 1 cut(s) 414
BstKTI GATC 1 cut(s) 465
BstMBI GATC 1 cut(s) 462
BstMWI GCNNNNNNNGC 3 cut(s) 383, 392, 476
BstNSI RCATGY 3 cut(s) 28, 418, 541
BstSFI CTRYAG 2 cut(s) 184, 706
BstSLI GKGCMC 1 cut(s) 330
BstV1I GCAGC 5 cut(s) 63, 104, 463, 538, 614
BstZ17I GTATAC 1 cut(s) 348
BsuRI GGCC 2 cut(s) 386, 544
BtsCI GGATG 4 cut(s) 297, 427, 677, 760
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 1 cut(s) 561
Cac8I GCNNGC 3 cut(s) 326, 379, 539
CaiI CAGNNNCTG 1 cut(s) 705
CfoI GCGC 1 cut(s) 414
Cfr13I GGNCC 1 cut(s) 543
CseI GACGC 1 cut(s) 113
Csp6I GTAC 5 cut(s) 22, 250, 310, 406, 511
CviAII CATG 6 cut(s) 25, 314, 334, 415, 538, 722
CviQI GTAC 5 cut(s) 22, 250, 310, 406, 511
DdeI CTNAG 1 cut(s) 687
DpnI GATC 1 cut(s) 464
DpnII GATC 1 cut(s) 462
DraIII CACNNNGTG 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 740
EarI CTCTTC 1 cut(s) 740
Eco130I CCWWGG 1 cut(s) 387
EcoT14I CCWWGG 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 6 cut(s) 28, 317, 337, 418, 541, 725
FalI AAGNNNNNCTT 2 cut(s) 497, 529
FaqI GGGAC 2 cut(s) 93, 236
FatI CATG 6 cut(s) 24, 313, 333, 414, 537, 721
FbaI TGATCA 1 cut(s) 462
FblI GTMKAC 1 cut(s) 347
Fnu4HI GCNGC 6 cut(s) 52, 93, 477, 542, 552, 603
FokI GGATG 4 cut(s) 304, 434, 684, 767
Fsp4HI GCNGC 6 cut(s) 52, 93, 477, 542, 552, 603
FspBI CTAG 1 cut(s) 473
GlaI GCGC 1 cut(s) 413
GluI GCNGC 6 cut(s) 52, 93, 477, 542, 552, 603
GsaI CCCAGC 3 cut(s) 51, 489, 609
HaeIII GGCC 2 cut(s) 386, 544
HgaI GACGC 1 cut(s) 113
HhaI GCGC 1 cut(s) 414
Hin1II CATG 6 cut(s) 28, 317, 337, 418, 541, 725
Hin6I GCGC 1 cut(s) 412
HinP1I GCGC 1 cut(s) 412
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 217, 317
HpaI GTTAAC 1 cut(s) 30
HphI GGTGA 1 cut(s) 647
Hpy166II GTNNAC 6 cut(s) 16, 30, 181, 328, 348, 406
Hpy188I TCNGA 3 cut(s) 103, 303, 807
Hpy188III TCNNGA 2 cut(s) 221, 518
Hpy8I GTNNAC 6 cut(s) 16, 30, 181, 328, 348, 406
Hpy99I CGWCG 1 cut(s) 669
HpyAV CCTTC 3 cut(s) 191, 626, 674
HpyCH4III ACNGT 3 cut(s) 88, 185, 719
HpyCH4IV ACGT 2 cut(s) 12, 664
HpyCH4V TGCA 5 cut(s) 92, 328, 503, 602, 773
HpyF10VI GCNNNNNNNGC 3 cut(s) 383, 392, 476
HpyF3I CTNAG 1 cut(s) 687
HpySE526I ACGT 2 cut(s) 12, 664
Hsp92II CATG 6 cut(s) 28, 317, 337, 418, 541, 725
HspAI GCGC 1 cut(s) 412
Ksp22I TGATCA 1 cut(s) 462
KspAI GTTAAC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 462
LmnI GCTCC 2 cut(s) 446, 813
Lsp1109I GCAGC 5 cut(s) 63, 104, 463, 538, 614
LweI GCATC 2 cut(s) 282, 490
MaeI CTAG 1 cut(s) 473
MaeII ACGT 2 cut(s) 12, 664
MaeIII GTNAC 2 cut(s) 40, 710
MalI GATC 1 cut(s) 464
MboI GATC 1 cut(s) 462
MboII GAAGA 3 cut(s) 358, 626, 727
MhlI GDGCHC 2 cut(s) 330, 443
MluCI AATT 2 cut(s) 64, 169
MlyI GAGTC 2 cut(s) 226, 326
MmeI TCCRAC 2 cut(s) 129, 399
MnlI CCTC 7 cut(s) 277, 394, 568, 579, 586, 604, 662
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 566
MspA1I CMGCKG 1 cut(s) 605
MwoI GCNNNNNNNGC 3 cut(s) 383, 392, 476
NdeII GATC 1 cut(s) 462
NlaIII CATG 6 cut(s) 28, 317, 337, 418, 541, 725
NspI RCATGY 3 cut(s) 28, 418, 541
OliI CACNNNNGTG 1 cut(s) 566
PaeI GCATGC 1 cut(s) 541
PciI ACATGT 1 cut(s) 24
PkrI GCNGC 6 cut(s) 53, 94, 478, 543, 553, 604
PleI GAGTC 2 cut(s) 225, 325
PpsI GAGTC 2 cut(s) 225, 325
PscI ACATGT 1 cut(s) 24
Psp1406I AACGTT 1 cut(s) 12
PspFI CCCAGC 3 cut(s) 47, 485, 605
PspPI GGNCC 1 cut(s) 543
PsrI GAACNNNNNNTAC 2 cut(s) 667, 699
PstNI CAGNNNCTG 1 cut(s) 705
PvuII CAGCTG 1 cut(s) 605
RsaI GTAC 5 cut(s) 23, 251, 311, 407, 512
RsaNI GTAC 5 cut(s) 22, 250, 310, 406, 511
RseI CAYNNNNRTG 1 cut(s) 566
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 6 cut(s) 52, 93, 477, 542, 552, 603
Sau3AI GATC 1 cut(s) 462
Sau96I GGNCC 1 cut(s) 543
ScaI AGTACT 1 cut(s) 512
SchI GAGTC 2 cut(s) 226, 326
SduI GDGCHC 2 cut(s) 330, 443
SfaNI GCATC 2 cut(s) 282, 490
SfcI CTRYAG 2 cut(s) 184, 706
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
SphI GCATGC 1 cut(s) 541
Sse9I AATT 2 cut(s) 64, 169
SsiI CCGC 2 cut(s) 541, 566
SspI AATATT 1 cut(s) 790
SspMI CTAG 1 cut(s) 473
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 3 cut(s) 88, 185, 719
TaiI ACGT 2 cut(s) 15, 667
TaqI TCGA 2 cut(s) 320, 667
TasI AATT 2 cut(s) 64, 169
TatI WGTACW 2 cut(s) 249, 510
TauI GCSGC 1 cut(s) 544
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 568
TseI GCWGC 5 cut(s) 51, 92, 476, 551, 602
TspDTI ATGAA 1 cut(s) 358
TspRI CASTG 1 cut(s) 568
VneI GTGCAC 1 cut(s) 326
XceI RCATGY 3 cut(s) 28, 418, 541
XcmI CCANNNNNNNNNTGG 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 347
XspI CTAG 1 cut(s) 473
ZrmI AGTACT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.