RchiOBHm_Chr7g0218371

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000101
Physical Location & Seq
Reverse (-)
36432241 .. 36432744
504 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19547

Sequence Viewer

Length: 504 bp
ATGTGCCAGGCTTTGATTGAGGATGGCAATGCAGACCAGGCCGTGGAGATTCATCATACCATTGTTAAGATGCGTAACTGGCCCATAGTCCTATTCTACACCTGTGTTATTGAAGCCTACCTGAAGTTTGGCAAGACCAAGGGTGCTCTGGAGACATACCGCGGCATGCTAGATGCTGGGGTTGCCCCAAACTCATACACTTACACTGTTTTAATCAACGATCTCACTGCTGACCCCAACTTCTCTAGAGATGCCAAGAAGTGCCTGCTTGAGATGATGGACAAGGGGATGAGGCCTAATGCTGCTACCTGCACTGCTGTAATAGAGAGCTTTGCAAAGCAAGAGGACGAGGCATCTGAGGAGGAGTGCAAAGAGTTGGTGGAAGTGATGGTGGGTAAGGGCTTTGTGCCAAACGCAAAGGCTATGAGGGAGGTTCTAAAGGGAAGGCCAACACCATTAGTTAAAAGGGTCATGACCATTGTCCTTTCCAACTTGAAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

167

Amino Acids

18.55

Weight (kDa)

6.16

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 11 - 116 1.4e-09 Fungal tetratrico peptide repeats
PPR_2 PF13041 30 - 75 3.4e-12 PPR repeat family
PPR_long PF17177 45 - 140 9.9e-07 Pentacotripeptide-repeat region of PRORP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 317
AccB7I CCANNNNNTGG 1 cut(s) 43
AccII CGCG 1 cut(s) 162
AciI CCGC 2 cut(s) 160, 162
AcuI CTGAAG 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 2 cut(s) 113, 496
AjnI CCWGG 2 cut(s) 6, 36
AluBI AGCT 1 cut(s) 330
AluI AGCT 1 cut(s) 330
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 146
AoxI GGCC 4 cut(s) 39, 80, 293, 446
ApeKI GCWGC 1 cut(s) 302
AspS9I GGNCC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 289
BccI CCATC 3 cut(s) 17, 271, 382
BceAI ACGGC 1 cut(s) 26
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 2 cut(s) 8, 38
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 2 cut(s) 170, 246
BfuAI ACCTGC 1 cut(s) 317
BisI GCNGC 2 cut(s) 163, 303
BlsI GCNGC 2 cut(s) 164, 304
Bme1390I CCNGG 2 cut(s) 8, 38
BmgT120I GGNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 8, 38
BmsI GCATC 4 cut(s) 60, 163, 241, 362
BoxI GACNNNNGTC 1 cut(s) 479
BpmI CTGGAG 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 290
BsaJI CCNNGG 3 cut(s) 42, 138, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 34
BseBI CCWGG 2 cut(s) 8, 38
BseDI CCNNGG 3 cut(s) 42, 138, 160
BseGI GGATG 2 cut(s) 28, 294
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 2 cut(s) 374, 377
BseXI GCAGC 1 cut(s) 289
BseYI CCCAGC 1 cut(s) 176
BsgI GTGCAG 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 4 cut(s) 41, 82, 295, 448
BsiHKAI GWGCWC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 146
BsnI GGCC 4 cut(s) 41, 82, 295, 448
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 2 cut(s) 160, 162
BspANI GGCC 4 cut(s) 41, 82, 295, 448
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 162
BspHI TCATGA 1 cut(s) 471
BspMI ACCTGC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 34
BsrI ACTGG 1 cut(s) 83
BssECI CCNNGG 3 cut(s) 42, 138, 160
BssMI GATC 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 8, 38
Bst4CI ACNGT 1 cut(s) 208
BstC8I GCNNGC 2 cut(s) 167, 266
BstDEI CTNAG 1 cut(s) 357
BstDSI CCRYGG 2 cut(s) 42, 160
BstF5I GGATG 2 cut(s) 28, 294
BstFNI CGCG 1 cut(s) 162
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 3 cut(s) 38, 79, 182
BstNI CCWGG 2 cut(s) 8, 38
BstNSI RCATGY 1 cut(s) 169
BstPAI GACNNNNGTC 1 cut(s) 479
BstSCI CCNGG 2 cut(s) 6, 36
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 289
BsuRI GGCC 4 cut(s) 41, 82, 295, 448
BtgI CCRYGG 2 cut(s) 42, 160
BtsCI GGATG 2 cut(s) 28, 294
BtsI GCAGTG 2 cut(s) 225, 312
BtsIMutI CAGTG 3 cut(s) 204, 225, 312
BveI ACCTGC 1 cut(s) 317
Cac8I GCNNGC 2 cut(s) 167, 266
CciI TCATGA 1 cut(s) 471
Cfr13I GGNCC 1 cut(s) 81
Cfr42I CCGCGG 1 cut(s) 163
CviAII CATG 2 cut(s) 166, 472
DdeI CTNAG 1 cut(s) 357
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 138
Eco147I AGGCCT 1 cut(s) 295
Eco57I CTGAAG 1 cut(s) 143
EcoRII CCWGG 2 cut(s) 6, 36
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 169, 475
FaiI YATR 7 cut(s) 57, 86, 157, 167, 196, 425, 473
FatI CATG 2 cut(s) 165, 471
Fnu4HI GCNGC 2 cut(s) 163, 303
FokI GGATG 2 cut(s) 35, 301
Fsp4HI GCNGC 2 cut(s) 163, 303
FspBI CTAG 2 cut(s) 170, 246
GluI GCNGC 2 cut(s) 163, 303
GsaI CCCAGC 1 cut(s) 180
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 4 cut(s) 41, 82, 295, 448
Hin1II CATG 2 cut(s) 169, 475
HinfI GANTC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 3 cut(s) 149, 246, 472
HpyAV CCTTC 2 cut(s) 438, 490
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 4 cut(s) 32, 312, 335, 369
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 79, 182
HpyF3I CTNAG 1 cut(s) 357
Hsp92II CATG 2 cut(s) 169, 475
KspI CCGCGG 1 cut(s) 163
Kzo9I GATC 1 cut(s) 220
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 4 cut(s) 60, 163, 241, 362
MaeI CTAG 2 cut(s) 170, 246
MaeIII GTNAC 1 cut(s) 74
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 148
MnlI CCTC 8 cut(s) 13, 285, 337, 343, 352, 355, 420, 424
MseI TTAA 3 cut(s) 66, 212, 462
MspA1I CMGCKG 1 cut(s) 162
MspR9I CCNGG 2 cut(s) 8, 38
MvaI CCWGG 2 cut(s) 8, 38
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 3 cut(s) 38, 79, 182
NdeII GATC 1 cut(s) 220
NlaIII CATG 2 cut(s) 169, 475
NspI RCATGY 1 cut(s) 169
PaeI GCATGC 1 cut(s) 169
PagI TCATGA 1 cut(s) 471
PceI AGGCCT 1 cut(s) 295
PfeI GAWTC 1 cut(s) 49
PflMI CCANNNNNTGG 1 cut(s) 43
PkrI GCNGC 2 cut(s) 164, 304
PshAI GACNNNNGTC 1 cut(s) 479
Psp6I CCWGG 2 cut(s) 6, 36
PspFI CCCAGC 1 cut(s) 176
PspGI CCWGG 2 cut(s) 6, 36
PspPI GGNCC 1 cut(s) 81
SacII CCGCGG 1 cut(s) 163
SaqAI TTAA 3 cut(s) 66, 212, 462
SatI GCNGC 2 cut(s) 163, 303
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 81
ScrFI CCNGG 2 cut(s) 8, 38
SduI GDGCHC 1 cut(s) 148
SetI ASST 5 cut(s) 104, 123, 311, 332, 435
SfaNI GCATC 4 cut(s) 60, 163, 241, 362
Sfr303I CCGCGG 1 cut(s) 163
SgrBI CCGCGG 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SphI GCATGC 1 cut(s) 169
SseBI AGGCCT 1 cut(s) 295
SsiI CCGC 2 cut(s) 160, 162
SspMI CTAG 2 cut(s) 170, 246
StuI AGGCCT 1 cut(s) 295
StyD4I CCNGG 2 cut(s) 6, 36
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 208
TauI GCSGC 1 cut(s) 165
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 3 cut(s) 66, 212, 462
Tru9I TTAA 3 cut(s) 66, 212, 462
TscAI CASTG 3 cut(s) 211, 232, 319
TseI GCWGC 1 cut(s) 302
TspDTI ATGAA 1 cut(s) 41
TspRI CASTG 3 cut(s) 211, 232, 319
Van91I CCANNNNNTGG 1 cut(s) 43
XbaI TCTAGA 1 cut(s) 245
XceI RCATGY 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XspI CTAG 2 cut(s) 170, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.