RchiOBHm_Chr7g0235971

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000101
Physical Location & Seq
Forward (+)
60862325 .. 60863507
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21146

Sequence Viewer

Length: 723 bp
ATGAAAGTGAAGGAGCTAACAATCAAAGCAATGGCGGAGTCTAAAGTCAAGTCCAATTCCTGTGCGGATGACCTCGAGAAACGTGTAATGAAGGTTTTCAAGGAGGCCACCAAAGACTGTGAGGACAAGGAAGTGAAAGAAATATTTGACATGATTAGGAACTATGACGACCTTAACAAGTATGCAATTTCGGTGTTCAATTCCATGGCAAATGACAAGTTTATTGAGGTAGCTAGAGAGCTCTTTAAGCCTCGCTCTGAGTCTGAGTCTGAGTCGGCTGCCATACTGCCTGATGTGGCCATCTACACCGTTGTCATTTGGGCCTGCATCTCTGCCGGCAAGATCATGGCTGCTCACAAGGTCTACCACCACATGATAGCCAACGGTGTCGCCCCCACCTCCTGCACTTACATTATTCTCATCAACACACTTGCAACCAACTCATCTTCTGATGTCAATTTTATTGGGTATGCCAAGAAGTATTTTTTGGAAATGTTGGATAAGGGGATGATGCCTATCTCATCCTCCTACATGGCCGTCTTCAAAGCCATTGCTCGCCAGGAGCCAGTGGAGAAGGCCAGGGAGTTCCTTGAGCAGATACAAACAAAGGGGTTCAGCCCTAAGTTGGATGTTCCTCACTTTGATGTGGCCTACATGGAAGAAGCAATGAATGCGTTGAAGATGTCTTATGAAGGTTTTCAAGGAAGCCACCAAAGACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

240

Amino Acids

27.17

Weight (kDa)

6.24

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 94 - 144 1.3e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 97 - 145 1.1e-11 PPR repeat family
PPR_long PF17177 105 - 209 5.9e-06 Pentacotripeptide-repeat region of PRORP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 363
AciI CCGC 2 cut(s) 35, 65
AcoI YGGCCR 2 cut(s) 297, 534
AfiI CCNNNNNNNGG 1 cut(s) 625
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 5 cut(s) 100, 199, 544, 679, 701
AjnI CCWGG 2 cut(s) 558, 578
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AluBI AGCT 3 cut(s) 16, 233, 241
AluI AGCT 3 cut(s) 16, 233, 241
Alw21I GWGCWC 1 cut(s) 243
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 6 cut(s) 105, 297, 321, 534, 576, 648
ApeKI GCWGC 2 cut(s) 278, 350
Asp700I GAANNNNTTC 2 cut(s) 95, 696
AspS9I GGNCC 1 cut(s) 321
AvaI CYCGRG 1 cut(s) 74
BalI TGGCCA 1 cut(s) 299
BanII GRGCYC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 532
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 2 cut(s) 265, 337
BccI CCATC 1 cut(s) 308
BceAI ACGGC 1 cut(s) 521
BciT130I CCWGG 2 cut(s) 560, 580
BfaI CTAG 1 cut(s) 234
BisI GCNGC 2 cut(s) 279, 351
BlsI GCNGC 2 cut(s) 280, 352
Bme1390I CCNGG 2 cut(s) 560, 580
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 564
BmrFI CCNGG 2 cut(s) 560, 580
BmsI GCATC 2 cut(s) 336, 501
BpiI GAAGAC 1 cut(s) 532
BpuEI CTTGAG 1 cut(s) 611
BsaBI GATNNNNATC 1 cut(s) 515
BsaJI CCNNGG 2 cut(s) 204, 579
Bsc4I CCNNNNNNNGG 1 cut(s) 625
Bse118I RCCGGY 1 cut(s) 335
Bse1I ACTGG 1 cut(s) 566
Bse3DI GCAATG 3 cut(s) 36, 549, 672
Bse8I GATNNNNATC 1 cut(s) 515
BseBI CCWGG 2 cut(s) 560, 580
BseDI CCNNGG 2 cut(s) 204, 579
BseGI GGATG 4 cut(s) 73, 513, 521, 634
BseJI GATNNNNATC 1 cut(s) 515
BseLI CCNNNNNNNGG 1 cut(s) 625
BseMI GCAATG 3 cut(s) 36, 549, 672
BseMII CTCAG 3 cut(s) 249, 255, 261
BseNI ACTGG 1 cut(s) 566
BseXI GCAGC 2 cut(s) 265, 337
BsgI GTGCAG 1 cut(s) 388
BshFI GGCC 6 cut(s) 107, 299, 323, 536, 578, 650
BsiHKAI GWGCWC 1 cut(s) 243
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 625
BsmI GAATGC 1 cut(s) 676
BsnI GGCC 6 cut(s) 107, 299, 323, 536, 578, 650
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 1 cut(s) 342
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 2 cut(s) 35, 65
BspANI GGCC 6 cut(s) 107, 299, 323, 536, 578, 650
BspCNI CTCAG 3 cut(s) 250, 256, 262
BspLI GGNNCC 1 cut(s) 564
BsrDI GCAATG 3 cut(s) 36, 549, 672
BsrFI RCCGGY 1 cut(s) 335
BsrI ACTGG 1 cut(s) 566
BssAI RCCGGY 1 cut(s) 335
BssECI CCNNGG 2 cut(s) 204, 579
BssMI GATC 1 cut(s) 342
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 2 cut(s) 560, 580
Bst4CI ACNGT 4 cut(s) 119, 310, 386, 720
BstAPI GCANNNNNTGC 1 cut(s) 671
BstC8I GCNNGC 3 cut(s) 325, 337, 556
BstDEI CTNAG 4 cut(s) 258, 264, 270, 621
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 4 cut(s) 73, 513, 521, 634
BstKTI GATC 1 cut(s) 345
BstMBI GATC 1 cut(s) 342
BstMWI GCNNNNNNNGC 2 cut(s) 247, 671
BstNI CCWGG 2 cut(s) 560, 580
BstSCI CCNGG 2 cut(s) 558, 578
BstV1I GCAGC 2 cut(s) 265, 337
BstV2I GAAGAC 1 cut(s) 532
BsuRI GGCC 6 cut(s) 107, 299, 323, 536, 578, 650
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 4 cut(s) 73, 513, 521, 634
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 3 cut(s) 325, 337, 556
Cfr10I RCCGGY 1 cut(s) 335
Cfr13I GGNCC 1 cut(s) 321
CviAII CATG 6 cut(s) 151, 205, 346, 373, 532, 655
DdeI CTNAG 4 cut(s) 258, 264, 270, 621
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
EaeI YGGCCR 2 cut(s) 297, 534
EciI GGCGGA 1 cut(s) 50
Ecl136II GAGCTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 243
Eco53kI GAGCTC 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 558, 578
EcoT14I CCWWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 6 cut(s) 154, 208, 349, 376, 535, 658
FatI CATG 6 cut(s) 150, 204, 345, 372, 531, 654
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 2 cut(s) 279, 351
FokI GGATG 4 cut(s) 80, 508, 520, 641
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 2 cut(s) 279, 351
FspBI CTAG 1 cut(s) 234
GluI GCNGC 2 cut(s) 279, 351
HaeIII GGCC 6 cut(s) 107, 299, 323, 536, 578, 650
HapII CCGG 1 cut(s) 336
Hin1II CATG 6 cut(s) 154, 208, 349, 376, 535, 658
HinfI GANTC 4 cut(s) 38, 260, 266, 272
HpaII CCGG 1 cut(s) 336
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 4 cut(s) 259, 265, 271, 451
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 4 cut(s) 4, 85, 568, 686
HpyCH4III ACNGT 4 cut(s) 119, 310, 386, 720
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 4 cut(s) 185, 327, 405, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 247, 671
HpyF3I CTNAG 4 cut(s) 258, 264, 270, 621
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 6 cut(s) 154, 208, 349, 376, 535, 658
KroI GCCGGC 1 cut(s) 335
KroNI GCCGGC 1 cut(s) 337
Kzo9I GATC 1 cut(s) 342
LmnI GCTCC 2 cut(s) 13, 562
Lsp1109I GCAGC 2 cut(s) 265, 337
LweI GCATC 2 cut(s) 336, 501
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 82
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MboII GAAGA 4 cut(s) 438, 532, 671, 691
MhlI GDGCHC 1 cut(s) 243
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 4 cut(s) 55, 186, 199, 457
MluNI TGGCCA 1 cut(s) 299
MlyI GAGTC 4 cut(s) 47, 269, 275, 281
MmeI TCCRAC 2 cut(s) 477, 606
MnlI CCTC 8 cut(s) 83, 97, 115, 220, 261, 409, 535, 645
Mox20I TGGCCA 1 cut(s) 299
MroNI GCCGGC 1 cut(s) 335
MroXI GAANNNNTTC 2 cut(s) 95, 696
MscI TGGCCA 1 cut(s) 299
MseI TTAA 2 cut(s) 174, 246
MslI CAYNNNNRTG 1 cut(s) 642
Msp20I TGGCCA 1 cut(s) 299
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 2 cut(s) 560, 580
Mva1269I GAATGC 1 cut(s) 676
MvaI CCWGG 2 cut(s) 560, 580
MwoI GCNNNNNNNGC 2 cut(s) 247, 671
NaeI GCCGGC 1 cut(s) 337
NcoI CCATGG 1 cut(s) 204
NdeII GATC 1 cut(s) 342
NgoMIV GCCGGC 1 cut(s) 335
NlaIII CATG 6 cut(s) 154, 208, 349, 376, 535, 658
NlaIV GGNNCC 1 cut(s) 564
PaeR7I CTCGAG 1 cut(s) 74
PctI GAATGC 1 cut(s) 676
PdiI GCCGGC 1 cut(s) 337
PdmI GAANNNNTTC 2 cut(s) 95, 696
PkrI GCNGC 2 cut(s) 280, 352
PleI GAGTC 4 cut(s) 46, 268, 274, 280
PpsI GAGTC 4 cut(s) 46, 268, 274, 280
Psp124BI GAGCTC 1 cut(s) 243
Psp6I CCWGG 2 cut(s) 558, 578
PspGI CCWGG 2 cut(s) 558, 578
PspN4I GGNNCC 1 cut(s) 564
PspPI GGNCC 1 cut(s) 321
RseI CAYNNNNRTG 1 cut(s) 642
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 174, 246
SatI GCNGC 2 cut(s) 279, 351
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 1 cut(s) 321
SchI GAGTC 4 cut(s) 47, 269, 275, 281
ScrFI CCNGG 2 cut(s) 560, 580
SduI GDGCHC 1 cut(s) 243
SfaNI GCATC 2 cut(s) 336, 501
Sfr274I CTCGAG 1 cut(s) 74
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 642
SmlI CTYRAG 2 cut(s) 74, 590
SmoI CTYRAG 2 cut(s) 74, 590
Sse9I AATT 4 cut(s) 55, 186, 199, 457
SsiI CCGC 2 cut(s) 35, 65
SspI AATATT 1 cut(s) 144
SspMI CTAG 1 cut(s) 234
SstI GAGCTC 1 cut(s) 243
StyD4I CCNGG 2 cut(s) 558, 578
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 4 cut(s) 119, 310, 386, 720
TaiI ACGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 75
TasI AATT 4 cut(s) 55, 186, 199, 457
Tru1I TTAA 2 cut(s) 174, 246
Tru9I TTAA 2 cut(s) 174, 246
TscAI CASTG 1 cut(s) 573
TseI GCWGC 2 cut(s) 278, 350
TspDTI ATGAA 4 cut(s) 17, 104, 683, 705
TspRI CASTG 1 cut(s) 573
XhoI CTCGAG 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 2 cut(s) 95, 696
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.