RLG00000002624

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000101
Physical Location & Seq
Reverse (-)
37170002 .. 37171414
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002624

Sequence Viewer

Length: 1413 bp
ATGGCGGAAACCACCAAACTGCACTTGGCTTATTCTGCTGCCGATGATCTGAAGAAGCCGCCGGAGAACTTGCAAGAAGTCCTCGCCAAGATGCCTACGCAGGAAGCTCTGATCAGCAGTACAACCAAGGTGGTGGAGGGTTTGTCAAGAGACGGCTTCATGAACGTGGGCTTGGAGATTGGGGCCAAACAAGCTCCCCCGTTGAAGAGCGAGACAGACAAGCTTAAGGAACACGTAATGAAGGTGTTCGAGGATGCCACCAAAGATTGTGAAGACGAGAATGTGCAGGCAAGATTCAGACAGATTGGGGAGGACTATGAATCACTGAGCGAATTTGCATTCATCCTTTTTAAGGCTTTGGTAAGTGAAGGGCTCAACGAGGAAGCTGGAGAGCTATTTAAGCCTCTGTTCGAGACAGCCATACTGCCCGATGAGGCCATCTTCACCATTGTCATCTATATCTATGGCGCTGGCAAGACCATGGGTAATGCTCTGAAGGCGTACCAGCACATGTTATCTCATGGGATCACCCCCAGCTCTTGCACTTACAACGTACTCATCTCGATACTTGCAACTGACCCCAACTCCATTGGGCATGCCAAGGAGCTATTTCTCGAAATGTTGGATAAGAGTATCAGCCCCTTTTTTGGAACCTATATGGTTCTGTTCAACGGTATTGCTCGCCTGGAGTCCTTGGAGAAGGGGAAGGAGTTTCTTGAGCAGATAAAGCCTAAGGGGGTCTTGCCTGGGCTGGACGAAGGCTGTTTCACAGAGGCAATGAAGGCAATGAAGTTGTATGCTGATCTTGAGAAGAAGACCACTGACAAAGATGTTCTAGAAGTTATCCACAATATCTACCTTAATGGCTTCGACAAAGAGTTAACAACGATGTTATGTGCTATGATAGCAGATGGCAATGTAGATGAGGCAATGAGGCTATATCAGTCGACAGGTCAGCCTCTCCTAAATCCCATGGTCATAGTCCACACCGCTGTTATTGAAGCCTACATCAATGTTGGCAAGACCGAGGGTGCTCTCCAGACCTACCAGGACATGCTAGCTGCTGGACTTGCCCCTATATCCTACACTTACTCTGTTTTGATCAAGGGACTCGCTGCTGACCCCAACTTCTTTGGAGATGCCAAGAAGTATCTGATTGAGATGATGGACATCGGTATGCATCCTAATGCTCCTACGTACACTGCAGTTTTTGAGGCCTTTGCAAGGGAAGATGACAAGGCAACTGAGGAGGAGGGCAAAAAGTTTCTGGAGGTCATGATGGCCCAGGGGTTTGTACCTGATCCCGTGGCTGTGAAGGAGGAGTTAACAGGCAGACCAACAGCTGTGATTCGCAGGGTCATGAACATCATCCTTTCGAGTAGAAGCACTGATGAGCAGCATTATCAATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

471

Amino Acids

52.09

Weight (kDa)

4.83

Isoelectric Point (pI)

35.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 143 - 191 1.1e-06 PPR repeat family
PPR_2 PF13041 326 - 372 2.6e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 947
AciI CCGC 3 cut(s) 5, 59, 990
AclWI GGATC 2 cut(s) 533, 1295
AcsI RAATTY 1 cut(s) 332
AcuI CTGAAG 2 cut(s) 71, 515
AfaI GTAC 5 cut(s) 121, 503, 555, 1199, 1296
AfiI CCNNNNNNNGG 3 cut(s) 352, 647, 1224
AflII CTTAAG 1 cut(s) 224
AflIII ACRYGT 2 cut(s) 232, 510
AgsI TTSAA 3 cut(s) 205, 670, 1001
AjnI CCWGG 4 cut(s) 684, 745, 1047, 1284
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 9 cut(s) 107, 194, 223, 386, 394, 537, 607, 1061, 1343
AluI AGCT 9 cut(s) 107, 194, 223, 386, 394, 537, 607, 1061, 1343
Alw21I GWGCWC 1 cut(s) 1036
Alw26I GTCTC 3 cut(s) 144, 206, 407
AlwI GGATC 2 cut(s) 533, 1295
AoxI GGCC 4 cut(s) 183, 435, 1215, 1281
ApeKI GCWGC 4 cut(s) 38, 1061, 1115, 1396
ApoI RAATTY 1 cut(s) 332
Asp700I GAANNNNTTC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 470
AspS9I GGNCC 2 cut(s) 183, 1282
AsuHPI GGTGA 2 cut(s) 436, 520
AsuNHI GCTAGC 1 cut(s) 1057
AxyI CCTNAGG 1 cut(s) 732
BanII GRGCYC 1 cut(s) 375
BbsI GAAGAC 2 cut(s) 279, 821
Bbv12I GWGCWC 1 cut(s) 1036
BbvI GCAGC 4 cut(s) 25, 1048, 1102, 1408
BccI CCATC 4 cut(s) 446, 905, 1159, 1273
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 4 cut(s) 686, 747, 1049, 1286
BclI TGATCA 2 cut(s) 111, 1101
BcoDI GTCTC 3 cut(s) 144, 206, 407
BfaI CTAG 2 cut(s) 836, 1058
BfmI CTRYAG 1 cut(s) 1203
BfoI RGCGCY 1 cut(s) 471
BfrI CTTAAG 1 cut(s) 224
BisI GCNGC 5 cut(s) 39, 59, 1062, 1116, 1397
BlsI GCNGC 5 cut(s) 40, 60, 1063, 1117, 1398
Bme1390I CCNGG 4 cut(s) 686, 747, 1049, 1286
BmgT120I GGNCC 2 cut(s) 183, 1282
BmiI GGNNCC 2 cut(s) 184, 652
BmrFI CCNGG 4 cut(s) 686, 747, 1049, 1286
BmsI GCATC 4 cut(s) 81, 244, 1129, 1189
BmtI GCTAGC 1 cut(s) 1061
BpiI GAAGAC 2 cut(s) 279, 821
BpmI CTGGAG 4 cut(s) 408, 707, 1022, 1289
BpuEI CTTGAG 2 cut(s) 737, 827
BsaAI YACGTR 2 cut(s) 235, 1197
BsaBI GATNNNNATC 1 cut(s) 1169
BsaXI ACNNNNNCTCC 4 cut(s) 128, 158, 569, 599
Bsc4I CCNNNNNNNGG 3 cut(s) 352, 647, 1224
Bse21I CCTNAGG 1 cut(s) 732
Bse3DI GCAATG 4 cut(s) 783, 792, 922, 936
Bse8I GATNNNNATC 1 cut(s) 1169
BseBI CCWGG 4 cut(s) 686, 747, 1049, 1286
BseGI GGATG 4 cut(s) 259, 342, 1180, 1368
BseJI GATNNNNATC 1 cut(s) 1169
BseLI CCNNNNNNNGG 3 cut(s) 352, 647, 1224
BseMI GCAATG 4 cut(s) 783, 792, 922, 936
BseMII CTCAG 2 cut(s) 317, 1236
BseRI GAGGAG 3 cut(s) 1262, 1265, 1334
BseXI GCAGC 4 cut(s) 25, 1048, 1102, 1408
BseYI CCCAGC 1 cut(s) 533
BsgI GTGCAG 2 cut(s) 5, 305
BshFI GGCC 4 cut(s) 185, 437, 1217, 1283
BsiHKAI GWGCWC 1 cut(s) 1036
BsiSI CCGG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 1122
BslI CCNNNNNNNGG 3 cut(s) 352, 647, 1224
BsmAI GTCTC 3 cut(s) 144, 206, 407
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 1122
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 4 cut(s) 185, 437, 1217, 1283
Bsp1286I GDGCHC 2 cut(s) 375, 1036
Bsp143I GATC 6 cut(s) 46, 111, 525, 802, 1101, 1300
Bsp19I CCATGG 2 cut(s) 480, 972
BspACI CCGC 3 cut(s) 5, 59, 990
BspANI GGCC 4 cut(s) 185, 437, 1217, 1283
BspCNI CTCAG 2 cut(s) 318, 1237
BspHI TCATGA 3 cut(s) 159, 1275, 1359
BspLI GGNNCC 2 cut(s) 184, 652
BspMAI CTGCAG 1 cut(s) 1207
BspOI GCTAGC 1 cut(s) 1061
BspPI GGATC 2 cut(s) 533, 1295
BspQI GCTCTTC 1 cut(s) 200
BspTI CTTAAG 1 cut(s) 224
BsrDI GCAATG 4 cut(s) 783, 792, 922, 936
BssMI GATC 6 cut(s) 46, 111, 525, 802, 1101, 1300
BssT1I CCWWGG 5 cut(s) 126, 480, 600, 693, 972
Bst2UI CCWGG 4 cut(s) 686, 747, 1049, 1286
Bst4CI ACNGT 1 cut(s) 674
Bst6I CTCTTC 1 cut(s) 200
BstAFI CTTAAG 1 cut(s) 224
BstBAI YACGTR 2 cut(s) 235, 1197
BstC8I GCNNGC 5 cut(s) 288, 472, 597, 682, 1059
BstDEI CTNAG 3 cut(s) 326, 732, 1245
BstDSI CCRYGG 3 cut(s) 480, 972, 1305
BstENI CCTNNNNNAGG 2 cut(s) 350, 1222
BstF5I GGATG 4 cut(s) 259, 342, 1180, 1368
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 6 cut(s) 49, 114, 528, 805, 1104, 1303
BstMAI GTCTC 3 cut(s) 144, 206, 407
BstMBI GATC 6 cut(s) 46, 111, 525, 802, 1101, 1300
BstMWI GCNNNNNNNGC 8 cut(s) 35, 191, 400, 497, 727, 782, 905, 1070
BstNI CCWGG 4 cut(s) 686, 747, 1049, 1286
BstNSI RCATGY 3 cut(s) 514, 599, 1057
BstSCI CCNGG 4 cut(s) 684, 745, 1047, 1284
BstSFI CTRYAG 1 cut(s) 1203
BstSNI TACGTA 1 cut(s) 1197
BstV1I GCAGC 4 cut(s) 25, 1048, 1102, 1408
BstV2I GAAGAC 2 cut(s) 279, 821
BstXI CCANNNNNNTGG 1 cut(s) 133
Bsu36I CCTNAGG 1 cut(s) 732
BsuRI GGCC 4 cut(s) 185, 437, 1217, 1283
BtgI CCRYGG 3 cut(s) 480, 972, 1305
BtsCI GGATG 4 cut(s) 259, 342, 1180, 1368
BtsI GCAGTG 1 cut(s) 1200
BtsIMutI CAGTG 4 cut(s) 323, 819, 1200, 1386
Cac8I GCNNGC 5 cut(s) 288, 472, 597, 682, 1059
CciI TCATGA 3 cut(s) 159, 1275, 1359
CfoI GCGC 1 cut(s) 470
Cfr13I GGNCC 2 cut(s) 183, 1282
Csp6I GTAC 5 cut(s) 120, 502, 554, 1198, 1295
CspCI CAANNNNNGTGG 2 cut(s) 111, 146
CviAII CATG 9 cut(s) 160, 481, 511, 521, 596, 973, 1054, 1276, 1360
CviQI GTAC 5 cut(s) 120, 502, 554, 1198, 1295
DdeI CTNAG 3 cut(s) 326, 732, 1245
DpnI GATC 6 cut(s) 48, 113, 527, 804, 1103, 1302
DpnII GATC 6 cut(s) 46, 111, 525, 802, 1101, 1300
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
EciI GGCGGA 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 1197
Eco130I CCWWGG 5 cut(s) 126, 480, 600, 693, 972
Eco147I AGGCCT 1 cut(s) 1217
Eco24I GRGCYC 1 cut(s) 375
Eco57I CTGAAG 2 cut(s) 71, 515
Eco81I CCTNAGG 1 cut(s) 732
EcoNI CCTNNNNNAGG 2 cut(s) 350, 1222
EcoRII CCWGG 4 cut(s) 684, 745, 1047, 1284
EcoT14I CCWWGG 5 cut(s) 126, 480, 600, 693, 972
EcoT22I ATGCAT 1 cut(s) 1182
EcoT38I GRGCYC 1 cut(s) 375
ErhI CCWWGG 5 cut(s) 126, 480, 600, 693, 972
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 9 cut(s) 163, 484, 514, 524, 599, 976, 1057, 1279, 1363
FalI AAGNNNNNCTT 2 cut(s) 725, 757
FaqI GGGAC 1 cut(s) 1122
FatI CATG 9 cut(s) 159, 480, 510, 520, 595, 972, 1053, 1275, 1359
FbaI TGATCA 2 cut(s) 111, 1101
FblI GTMKAC 1 cut(s) 947
Fnu4HI GCNGC 5 cut(s) 39, 59, 1062, 1116, 1397
FokI GGATG 4 cut(s) 266, 329, 1167, 1355
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 5 cut(s) 39, 59, 1062, 1116, 1397
FspBI CTAG 2 cut(s) 836, 1058
GlaI GCGC 1 cut(s) 469
GluI GCNGC 5 cut(s) 39, 59, 1062, 1116, 1397
GsaI CCCAGC 1 cut(s) 537
GsuI CTGGAG 4 cut(s) 408, 707, 1022, 1289
HaeII RGCGCY 1 cut(s) 471
HaeIII GGCC 4 cut(s) 185, 437, 1217, 1283
HapII CCGG 1 cut(s) 62
HhaI GCGC 1 cut(s) 470
Hin1II CATG 9 cut(s) 163, 484, 514, 524, 599, 976, 1057, 1279, 1363
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HincII GTYRAC 3 cut(s) 882, 948, 1326
HindII GTYRAC 3 cut(s) 882, 948, 1326
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 5 cut(s) 294, 320, 689, 1110, 1348
HpaI GTTAAC 2 cut(s) 882, 1326
HpaII CCGG 1 cut(s) 62
HphI GGTGA 2 cut(s) 436, 520
Hpy166II GTNNAC 5 cut(s) 882, 948, 985, 1200, 1326
Hpy188I TCNGA 5 cut(s) 51, 111, 299, 495, 1155
Hpy8I GTNNAC 5 cut(s) 882, 948, 985, 1200, 1326
HpyAV CCTTC 8 cut(s) 235, 362, 490, 694, 700, 752, 775, 1309
HpyCH4III ACNGT 1 cut(s) 674
HpyCH4IV ACGT 4 cut(s) 165, 234, 552, 1196
HpyCH4V TGCA 9 cut(s) 22, 73, 286, 338, 543, 572, 1180, 1205, 1223
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 191, 400, 497, 727, 782, 905, 1070
HpyF3I CTNAG 3 cut(s) 326, 732, 1245
HpySE526I ACGT 4 cut(s) 165, 234, 552, 1196
Hsp92II CATG 9 cut(s) 163, 484, 514, 524, 599, 976, 1057, 1279, 1363
HspAI GCGC 1 cut(s) 468
Ksp22I TGATCA 2 cut(s) 111, 1101
KspAI GTTAAC 2 cut(s) 882, 1326
Kzo9I GATC 6 cut(s) 46, 111, 525, 802, 1101, 1300
LguI GCTCTTC 1 cut(s) 200
LmnI GCTCC 3 cut(s) 199, 604, 1195
Lsp1109I GCAGC 4 cut(s) 25, 1048, 1102, 1408
LweI GCATC 4 cut(s) 81, 244, 1129, 1189
MaeI CTAG 2 cut(s) 836, 1058
MaeII ACGT 4 cut(s) 165, 234, 552, 1196
MalI GATC 6 cut(s) 48, 113, 527, 804, 1103, 1302
MboI GATC 6 cut(s) 46, 111, 525, 802, 1101, 1300
MboII GAAGA 7 cut(s) 64, 217, 284, 433, 823, 826, 1241
MhlI GDGCHC 2 cut(s) 375, 1036
MluCI AATT 1 cut(s) 332
MlyI GAGTC 2 cut(s) 698, 1104
MmeI TCCRAC 1 cut(s) 603
Mph1103I ATGCAT 1 cut(s) 1182
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 6 cut(s) 225, 351, 399, 861, 881, 1325
MslI CAYNNNNRTG 3 cut(s) 164, 1175, 1185
MspA1I CMGCKG 2 cut(s) 992, 1343
MspCI CTTAAG 1 cut(s) 224
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 4 cut(s) 686, 747, 1049, 1286
Mva1269I GAATGC 1 cut(s) 338
MvaI CCWGG 4 cut(s) 686, 747, 1049, 1286
MwoI GCNNNNNNNGC 8 cut(s) 35, 191, 400, 497, 727, 782, 905, 1070
NcoI CCATGG 2 cut(s) 480, 972
NdeII GATC 6 cut(s) 46, 111, 525, 802, 1101, 1300
NheI GCTAGC 1 cut(s) 1057
NlaIII CATG 9 cut(s) 163, 484, 514, 524, 599, 976, 1057, 1279, 1363
NlaIV GGNNCC 2 cut(s) 184, 652
NsiI ATGCAT 1 cut(s) 1182
NspI RCATGY 3 cut(s) 514, 599, 1057
PaeI GCATGC 1 cut(s) 599
PagI TCATGA 3 cut(s) 159, 1275, 1359
PasI CCCWGGG 1 cut(s) 1285
PceI AGGCCT 1 cut(s) 1217
PciI ACATGT 1 cut(s) 510
PciSI GCTCTTC 1 cut(s) 200
PctI GAATGC 1 cut(s) 338
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 3 cut(s) 294, 320, 1348
PkrI GCNGC 5 cut(s) 40, 60, 1063, 1117, 1398
PleI GAGTC 2 cut(s) 697, 1104
PpsI GAGTC 2 cut(s) 697, 1104
Ppu21I YACGTR 2 cut(s) 235, 1197
PscI ACATGT 1 cut(s) 510
Psp6I CCWGG 4 cut(s) 684, 745, 1047, 1284
PspFI CCCAGC 1 cut(s) 533
PspGI CCWGG 4 cut(s) 684, 745, 1047, 1284
PspN4I GGNNCC 2 cut(s) 184, 652
PspPI GGNCC 2 cut(s) 183, 1282
PstI CTGCAG 1 cut(s) 1207
PvuII CAGCTG 1 cut(s) 1343
RsaI GTAC 5 cut(s) 121, 503, 555, 1199, 1296
RsaNI GTAC 5 cut(s) 120, 502, 554, 1198, 1295
RseI CAYNNNNRTG 3 cut(s) 164, 1175, 1185
SalI GTCGAC 1 cut(s) 946
SapI GCTCTTC 1 cut(s) 200
SaqAI TTAA 6 cut(s) 225, 351, 399, 861, 881, 1325
SatI GCNGC 5 cut(s) 39, 59, 1062, 1116, 1397
Sau3AI GATC 6 cut(s) 46, 111, 525, 802, 1101, 1300
Sau96I GGNCC 2 cut(s) 183, 1282
SchI GAGTC 2 cut(s) 698, 1104
ScrFI CCNGG 4 cut(s) 686, 747, 1049, 1286
SduI GDGCHC 2 cut(s) 375, 1036
SfaNI GCATC 4 cut(s) 81, 244, 1129, 1189
SfcI CTRYAG 1 cut(s) 1203
SmiMI CAYNNNNRTG 3 cut(s) 164, 1175, 1185
SmlI CTYRAG 3 cut(s) 224, 716, 806
SmoI CTYRAG 3 cut(s) 224, 716, 806
SnaBI TACGTA 1 cut(s) 1197
SphI GCATGC 1 cut(s) 599
Sse9I AATT 1 cut(s) 332
SseBI AGGCCT 1 cut(s) 1217
SsiI CCGC 3 cut(s) 5, 59, 990
SspMI CTAG 2 cut(s) 836, 1058
StuI AGGCCT 1 cut(s) 1217
StyD4I CCNGG 4 cut(s) 684, 745, 1047, 1284
StyI CCWWGG 5 cut(s) 126, 480, 600, 693, 972
TaaI ACNGT 1 cut(s) 674
TaiI ACGT 4 cut(s) 168, 237, 555, 1199
TaqI TCGA 7 cut(s) 249, 411, 563, 615, 870, 947, 1376
TaqII GACCGA 1 cut(s) 1040
TasI AATT 1 cut(s) 332
TatI WGTACW 1 cut(s) 119
TauI GCSGC 1 cut(s) 61
TfiI GAWTC 3 cut(s) 294, 320, 1348
Tru1I TTAA 6 cut(s) 225, 351, 399, 861, 881, 1325
Tru9I TTAA 6 cut(s) 225, 351, 399, 861, 881, 1325
TscAI CASTG 4 cut(s) 330, 826, 1207, 1393
TseI GCWGC 4 cut(s) 38, 1061, 1115, 1396
TspDTI ATGAA 8 cut(s) 148, 176, 254, 331, 333, 794, 803, 1376
TspRI CASTG 4 cut(s) 330, 826, 1207, 1393
Vha464I CTTAAG 1 cut(s) 224
XagI CCTNNNNNAGG 2 cut(s) 350, 1222
XapI RAATTY 1 cut(s) 332
XbaI TCTAGA 1 cut(s) 835
XceI RCATGY 3 cut(s) 514, 599, 1057
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 947
XmnI GAANNNNTTC 1 cut(s) 245
XspI CTAG 2 cut(s) 836, 1058
Zsp2I ATGCAT 1 cut(s) 1182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.