FvH4_5g34950

Golgi vesicle prefusion complex stabilization

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
25568351 .. 25570093
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34950.t1

Sequence Viewer

Length: 531 bp
ATGGCCGATGGGCTTAATGATCTCGAGAAACATGTAATGAGGGTTTTCGAGGACGCGACCAAGGACTGTGTGGATATGGAATTGAAAGAACAATTCGACATTATGATTGGGGACTATGGTTCTCTCAATCAATATGCACTTGGCATGTTTGATTCGATGGTGAGAAACGACATGGTTGACCAAGGCAGAGAGCTGTTTAGGCCTGTCACTATGCTGGGGACGCTGCTGGATGTAGCTGTGTACACAATTGTTATTTTGGTCTACGCCCATGCCGGCAAGATCAGGGATGCTCTCAAGGTCTACCACCACATGTTATCCACTGCCATCACCCCCACGGCTTACACTTACACTGTGCTCATGATCGTAATTGGAAGAGACTCTTCGGGTGCTGATTTCGTTGGGTATGCTAATAAGTTCTTTTTGGAAATGCTGGATAGAGGGATGAAACCCCTTTCGGAGACCTACATGGTTGTGTTGGACCTCGTTGCCTACCGAGAGCCAGCGGAGAAGGCCAAGGAGTTCCTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

177

Amino Acids

19.97

Weight (kDa)

4.8

Isoelectric Point (pI)

16.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 66 - 124 4.5e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 77 - 120 6.1e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 261, 300
AccII CGCG 1 cut(s) 56
AciI CCGC 1 cut(s) 503
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 242
AflIII ACRYGT 2 cut(s) 31, 309
AgsI TTSAA 1 cut(s) 85
AluBI AGCT 2 cut(s) 193, 236
AluI AGCT 2 cut(s) 193, 236
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 2 cut(s) 369, 452
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 3 cut(s) 3, 200, 510
ApeKI GCWGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 478
AsuHPI GGTGA 2 cut(s) 172, 319
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 210
BccI CCATC 3 cut(s) 2, 151, 332
BceAI ACGGC 1 cut(s) 351
BcoDI GTCTC 2 cut(s) 369, 452
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
Bme18I GGWCC 1 cut(s) 478
BmeT110I CYCGRG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 478
BmsI GCATC 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 278
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 4 cut(s) 60, 181, 333, 513
Bse118I RCCGGY 1 cut(s) 272
BseDI CCNNGG 4 cut(s) 60, 181, 333, 513
BseGI GGATG 3 cut(s) 235, 292, 447
BseXI GCAGC 1 cut(s) 210
BseYI CCCAGC 1 cut(s) 214
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 3 cut(s) 5, 202, 512
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 273
BslFI GGGAC 2 cut(s) 125, 232
BsmAI GTCTC 2 cut(s) 369, 452
BsmFI GGGAC 2 cut(s) 125, 232
BsnI GGCC 3 cut(s) 5, 202, 512
Bso31I GGTCTC 1 cut(s) 452
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 357
Bsp1407I TGTACA 1 cut(s) 240
Bsp143I GATC 3 cut(s) 19, 279, 360
BspACI CCGC 1 cut(s) 503
BspANI GGCC 3 cut(s) 5, 202, 512
BspFNI CGCG 1 cut(s) 56
BspHI TCATGA 1 cut(s) 357
BspTNI GGTCTC 1 cut(s) 452
BsrFI RCCGGY 1 cut(s) 272
BsrGI TGTACA 1 cut(s) 240
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 4 cut(s) 60, 181, 333, 513
BssMI GATC 3 cut(s) 19, 279, 360
BssT1I CCWWGG 3 cut(s) 60, 181, 513
Bst4CI ACNGT 2 cut(s) 68, 352
Bst6I CTCTTC 2 cut(s) 367, 385
BstAUI TGTACA 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 274, 501
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 3 cut(s) 235, 292, 447
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 3 cut(s) 22, 282, 363
BstMAI GTCTC 2 cut(s) 369, 452
BstMBI GATC 3 cut(s) 19, 279, 360
BstMWI GCNNNNNNNGC 3 cut(s) 199, 220, 509
BstNSI RCATGY 3 cut(s) 35, 148, 313
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 210
BsuRI GGCC 3 cut(s) 5, 202, 512
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 3 cut(s) 235, 292, 447
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 318, 348
Cac8I GCNNGC 2 cut(s) 274, 501
CciI TCATGA 1 cut(s) 357
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 478
CseI GACGC 2 cut(s) 62, 229
Csp6I GTAC 1 cut(s) 241
CviAII CATG 7 cut(s) 32, 145, 172, 269, 310, 358, 466
CviJI RGCY 8 cut(s) 5, 13, 193, 202, 236, 338, 499, 512
CviKI_1 RGCY 8 cut(s) 5, 13, 193, 202, 236, 338, 499, 512
CviQI GTAC 1 cut(s) 241
DpnI GATC 3 cut(s) 21, 281, 362
DpnII GATC 3 cut(s) 19, 279, 360
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 367, 385
EarI CTCTTC 2 cut(s) 367, 385
Eco130I CCWWGG 3 cut(s) 60, 181, 513
Eco147I AGGCCT 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 452
Eco47I GGWCC 1 cut(s) 478
Eco88I CYCGRG 1 cut(s) 23
EcoT14I CCWWGG 3 cut(s) 60, 181, 513
ErhI CCWWGG 3 cut(s) 60, 181, 513
FaeI CATG 7 cut(s) 35, 148, 175, 272, 313, 361, 469
FalI AAGNNNNNCTT 2 cut(s) 364, 396
FaqI GGGAC 2 cut(s) 125, 232
FatI CATG 7 cut(s) 31, 144, 171, 268, 309, 357, 465
FblI GTMKAC 2 cut(s) 261, 300
Fnu4HI GCNGC 1 cut(s) 224
FokI GGATG 3 cut(s) 242, 299, 454
Fsp4HI GCNGC 1 cut(s) 224
GluI GCNGC 1 cut(s) 224
GsaI CCCAGC 1 cut(s) 218
HaeIII GGCC 3 cut(s) 5, 202, 512
HapII CCGG 1 cut(s) 273
HgaI GACGC 2 cut(s) 62, 229
Hin1II CATG 7 cut(s) 35, 148, 175, 272, 313, 361, 469
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 2 cut(s) 152, 377
HpaII CCGG 1 cut(s) 273
HphI GGTGA 2 cut(s) 172, 319
Hpy166II GTNNAC 5 cut(s) 178, 241, 243, 262, 301
Hpy188I TCNGA 1 cut(s) 457
Hpy188III TCNNGA 3 cut(s) 23, 25, 358
Hpy8I GTNNAC 5 cut(s) 178, 241, 243, 262, 301
HpyAV CCTTC 1 cut(s) 502
HpyCH4III ACNGT 2 cut(s) 68, 352
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 220, 509
Hsp92II CATG 7 cut(s) 35, 148, 175, 272, 313, 361, 469
KroI GCCGGC 1 cut(s) 272
KroNI GCCGGC 1 cut(s) 274
Kzo9I GATC 3 cut(s) 19, 279, 360
LpnPI CCDG 7 cut(s) 200, 212, 216, 268, 286, 416, 513
Lsp1109I GCAGC 1 cut(s) 210
LweI GCATC 1 cut(s) 277
MaeIII GTNAC 1 cut(s) 205
MalI GATC 3 cut(s) 21, 281, 362
MboI GATC 3 cut(s) 19, 279, 360
MboII GAAGA 2 cut(s) 372, 384
MfeI CAATTG 1 cut(s) 246
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 4 cut(s) 80, 92, 246, 366
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 1 cut(s) 456
MnlI CCTC 4 cut(s) 33, 43, 431, 491
MroNI GCCGGC 1 cut(s) 272
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 1 cut(s) 273
MunI CAATTG 1 cut(s) 246
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 3 cut(s) 199, 220, 509
NaeI GCCGGC 1 cut(s) 274
NdeII GATC 3 cut(s) 19, 279, 360
NgoMIV GCCGGC 1 cut(s) 272
NlaIII CATG 7 cut(s) 35, 148, 175, 272, 313, 361, 469
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 3 cut(s) 35, 148, 313
PaeR7I CTCGAG 1 cut(s) 23
PagI TCATGA 1 cut(s) 357
PceI AGGCCT 1 cut(s) 202
PciI ACATGT 2 cut(s) 31, 309
PdiI GCCGGC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 1 cut(s) 225
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
PscI ACATGT 2 cut(s) 31, 309
PspFI CCCAGC 1 cut(s) 214
PspPI GGNCC 1 cut(s) 478
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 470
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 3 cut(s) 19, 279, 360
Sau96I GGNCC 1 cut(s) 478
SchI GAGTC 1 cut(s) 371
SduI GDGCHC 1 cut(s) 357
SetI ASST 5 cut(s) 195, 238, 300, 464, 483
SfaNI GCATC 1 cut(s) 277
Sfr274I CTCGAG 1 cut(s) 23
SinI GGWCC 1 cut(s) 478
SlaI CTCGAG 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 3 cut(s) 23, 293, 524
SmoI CTYRAG 3 cut(s) 23, 293, 524
Sse9I AATT 4 cut(s) 80, 92, 246, 366
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 1 cut(s) 503
StuI AGGCCT 1 cut(s) 202
StyI CCWWGG 3 cut(s) 60, 181, 513
TaaI ACNGT 2 cut(s) 68, 352
TaqI TCGA 4 cut(s) 24, 48, 96, 155
TasI AATT 4 cut(s) 80, 92, 246, 366
TatI WGTACW 1 cut(s) 240
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 2 cut(s) 325, 355
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 458
TspRI CASTG 2 cut(s) 325, 355
VpaK11BI GGWCC 1 cut(s) 478
XceI RCATGY 3 cut(s) 35, 148, 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XhoI CTCGAG 1 cut(s) 23
XmiI GTMKAC 2 cut(s) 261, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.