Rmu_co8114088.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8114088.1
OG0000101
Physical Location & Seq
Reverse (-)
2 .. 605
604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8114088.1_g000001.1.cds

Sequence Viewer

Length: 604 bp
atgttcaatttgttggcaaatttcggccaggctaatgaagccaaagagctgtttaggcctctctctgtgccggccgtactgccggacgtggctgtcctcacaatggtcattctggtctacacccatgccggaaaggccaaggctgctctcaaggcctatcagcacatgatagccactggtgtcacccccacctccgctacttacaatgcactcatcacagcattcgcagaagactcatcttctggttccaattttgttggctatgctaagaagtattttttggaaatgttggataaggggatgaagcccaatcctggttgctatatatctgtgtttgacgccattgcttgtcgtgagtcagtggacaaggccaaggagttccttgagcagataaaagcaaaggggtttactcccgtcaacaatctttatcgctttgaagaacggcacctaacagaagcagtcaaggcaatcaggatgtacaatgatctcgtcaacaacaccatcgacaaggatttgagaaaggccttctgcaagtggcgcatccgtggcctcaagaaagaagcattgaggatgttccttgctttggtagatgatggagacgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

201

Amino Acids

22.46

Weight (kDa)

9.02

Isoelectric Point (pI)

20.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 444
AccI GTMKAC 1 cut(s) 117
AciI CCGC 1 cut(s) 195
AcoI YGGCCR 2 cut(s) 25, 72
AcsI RAATTY 1 cut(s) 19
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 2 cut(s) 78, 479
AfiI CCNNNNNNNGG 3 cut(s) 103, 314, 583
AgsI TTSAA 2 cut(s) 7, 437
AjiI CACGTC 1 cut(s) 88
AjnI CCWGG 2 cut(s) 27, 313
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 591
AoxI GGCC 8 cut(s) 25, 56, 72, 135, 153, 369, 522, 547
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 1 cut(s) 540
AsuHPI GGTGA 1 cut(s) 175
BanI GGYRCC 1 cut(s) 444
BbsI GAAGAC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 130
BccI CCATC 2 cut(s) 509, 587
BceAI ACGGC 2 cut(s) 59, 458
BciT130I CCWGG 2 cut(s) 29, 315
BcoDI GTCTC 1 cut(s) 591
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 2 cut(s) 29, 315
BmgBI CACGTC 1 cut(s) 88
BmiI GGNNCC 2 cut(s) 247, 446
BmrFI CCNGG 2 cut(s) 29, 315
BmsI GCATC 1 cut(s) 549
BpiI GAAGAC 1 cut(s) 237
BpuEI CTTGAG 3 cut(s) 134, 404, 536
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 138, 372, 544
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 314, 583
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 342
BseBI CCWGG 2 cut(s) 29, 315
BseDI CCNNGG 3 cut(s) 138, 372, 544
BseGI GGATG 4 cut(s) 306, 480, 540, 576
BseLI CCNNNNNNNGG 3 cut(s) 103, 314, 583
BseMI GCAATG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 181
BseX3I CGGCCG 1 cut(s) 72
BseXI GCAGC 1 cut(s) 130
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 8 cut(s) 27, 58, 74, 137, 155, 371, 524, 549
BshNI GGYRCC 1 cut(s) 444
BsiEI CGRYCG 1 cut(s) 75
BsiSI CCGG 3 cut(s) 71, 83, 129
BslI CCNNNNNNNGG 3 cut(s) 103, 314, 583
BsmAI GTCTC 1 cut(s) 591
BsmBI CGTCTC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 8 cut(s) 27, 58, 74, 137, 155, 371, 524, 549
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 1 cut(s) 484
BspACI CCGC 1 cut(s) 195
BspANI GGCC 8 cut(s) 27, 58, 74, 137, 155, 371, 524, 549
BspLI GGNNCC 2 cut(s) 247, 446
BspT107I GGYRCC 1 cut(s) 444
BsrDI GCAATG 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 70
BsrGI TGTACA 1 cut(s) 477
BsrI ACTGG 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 3 cut(s) 138, 372, 544
BssMI GATC 1 cut(s) 484
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 2 cut(s) 138, 372
Bst2UI CCWGG 2 cut(s) 29, 315
BstACI GRCGYC 1 cut(s) 339
BstAUI TGTACA 1 cut(s) 477
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 267
BstDSI CCRYGG 1 cut(s) 544
BstF5I GGATG 4 cut(s) 306, 480, 540, 576
BstHHI GCGC 1 cut(s) 540
BstKTI GATC 1 cut(s) 487
BstMAI GTCTC 1 cut(s) 591
BstMBI GATC 1 cut(s) 484
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 8 cut(s) 38, 55, 134, 143, 152, 464, 537, 546
BstNI CCWGG 2 cut(s) 29, 315
BstSCI CCNGG 2 cut(s) 27, 313
BstV1I GCAGC 1 cut(s) 130
BstV2I GAAGAC 1 cut(s) 237
BstZI CGGCCG 1 cut(s) 72
BsuRI GGCC 8 cut(s) 27, 58, 74, 137, 155, 371, 524, 549
BtgI CCRYGG 1 cut(s) 544
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 4 cut(s) 306, 480, 540, 576
BtsIMutI CAGTG 2 cut(s) 174, 366
Cac8I GCNNGC 1 cut(s) 72
CfoI GCGC 1 cut(s) 540
Cfr10I RCCGGY 1 cut(s) 70
CseI GACGC 1 cut(s) 347
Csp6I GTAC 2 cut(s) 77, 478
CviAII CATG 2 cut(s) 125, 166
CviQI GTAC 2 cut(s) 77, 478
DdeI CTNAG 1 cut(s) 267
DpnI GATC 1 cut(s) 486
DpnII GATC 1 cut(s) 484
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 2 cut(s) 25, 72
EagI CGGCCG 1 cut(s) 72
EclXI CGGCCG 1 cut(s) 72
Eco130I CCWWGG 2 cut(s) 138, 372
Eco147I AGGCCT 3 cut(s) 58, 155, 524
Eco52I CGGCCG 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 27, 313
EcoT14I CCWWGG 2 cut(s) 138, 372
ErhI CCWWGG 2 cut(s) 138, 372
Esp3I CGTCTC 1 cut(s) 591
FaeI CATG 2 cut(s) 128, 169
FaiI YATR 5 cut(s) 126, 167, 264, 324, 326
FatI CATG 2 cut(s) 124, 165
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 4 cut(s) 313, 487, 527, 583
Fsp4HI GCNGC 1 cut(s) 144
GlaI GCGC 1 cut(s) 539
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 8 cut(s) 27, 58, 74, 137, 155, 371, 524, 549
HapII CCGG 3 cut(s) 71, 83, 129
HgaI GACGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 540
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 2 cut(s) 128, 169
Hin6I GCGC 1 cut(s) 538
HinP1I GCGC 1 cut(s) 538
HincII GTYRAC 2 cut(s) 418, 493
HindII GTYRAC 2 cut(s) 418, 493
HinfI GANTC 2 cut(s) 233, 356
HpaII CCGG 3 cut(s) 71, 83, 129
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 5 cut(s) 118, 364, 408, 418, 493
Hpy188III TCNNGA 3 cut(s) 353, 472, 553
Hpy8I GTNNAC 5 cut(s) 118, 364, 408, 418, 493
HpyAV CCTTC 1 cut(s) 535
HpyCH4IV ACGT 2 cut(s) 87, 600
HpyCH4V TGCA 2 cut(s) 209, 531
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 55, 134, 143, 152, 464, 537, 546
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 2 cut(s) 87, 600
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 2 cut(s) 128, 169
HspAI GCGC 1 cut(s) 538
KroI GCCGGC 1 cut(s) 70
KroNI GCCGGC 1 cut(s) 72
Kzo9I GATC 1 cut(s) 484
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 1 cut(s) 549
MaeII ACGT 2 cut(s) 87, 600
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 486
MboI GATC 1 cut(s) 484
MboII GAAGA 3 cut(s) 231, 242, 449
MluCI AATT 3 cut(s) 7, 19, 250
MlyI GAGTC 2 cut(s) 227, 365
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 5 cut(s) 69, 107, 202, 560, 561
MroNI GCCGGC 1 cut(s) 70
MspI CCGG 3 cut(s) 71, 83, 129
MspR9I CCNGG 2 cut(s) 29, 315
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 2 cut(s) 29, 315
MwoI GCNNNNNNNGC 8 cut(s) 38, 55, 134, 143, 152, 464, 537, 546
NaeI GCCGGC 1 cut(s) 72
NdeII GATC 1 cut(s) 484
NgoMIV GCCGGC 1 cut(s) 70
NlaIII CATG 2 cut(s) 128, 169
NlaIV GGNNCC 2 cut(s) 247, 446
NmuCI GTSAC 1 cut(s) 181
PceI AGGCCT 3 cut(s) 58, 155, 524
PctI GAATGC 1 cut(s) 221
PdiI GCCGGC 1 cut(s) 72
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 2 cut(s) 227, 364
PpsI GAGTC 2 cut(s) 227, 364
Psp6I CCWGG 2 cut(s) 27, 313
PspGI CCWGG 2 cut(s) 27, 313
PspN4I GGNNCC 2 cut(s) 247, 446
RsaI GTAC 2 cut(s) 78, 479
RsaNI GTAC 2 cut(s) 77, 478
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 1 cut(s) 484
SchI GAGTC 2 cut(s) 227, 365
ScrFI CCNGG 2 cut(s) 29, 315
SetI ASST 5 cut(s) 51, 90, 194, 450, 603
SfaNI GCATC 1 cut(s) 549
SmlI CTYRAG 3 cut(s) 149, 383, 551
SmoI CTYRAG 3 cut(s) 149, 383, 551
Sse9I AATT 3 cut(s) 7, 19, 250
SseBI AGGCCT 3 cut(s) 58, 155, 524
SsiI CCGC 1 cut(s) 195
StuI AGGCCT 3 cut(s) 58, 155, 524
StyD4I CCNGG 2 cut(s) 27, 313
StyI CCWWGG 2 cut(s) 138, 372
TaiI ACGT 2 cut(s) 90, 603
TaqI TCGA 1 cut(s) 504
TasI AATT 3 cut(s) 7, 19, 250
TatI WGTACW 1 cut(s) 477
TscAI CASTG 2 cut(s) 181, 366
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 51, 317
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 2 cut(s) 181, 366
XapI RAATTY 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.