RchiOBHm_Chr7g0193131

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000101
Physical Location & Seq
Forward (+)
11546267 .. 11548992
2726 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17268

Sequence Viewer

Length: 1791 bp
ATGGCGGAAACCACCAAACTGAACTTGGCTGATTCTGCTGCTGCCGATGACCTGGAGAAGCCGCCGGAGGACTTGCGAAAAGTCCTCGCCAAGATGCGTACCCAGGAAGCTCTGATCATCAGCACAACCAAGATGGTGGAGGGTTTGTTAAGAGACGGCTTCATGAACGTGGCCTTGGAGATTGGAGCCAAGATTCAGGACACCAATGAGGTGCCTCGGGTCGTCACCGACACTGCTGTCATCGAGTACTACGTCAATGCCGCAGGGGACAGGACCAAGGATGCTCTCAGAGTGTTCAAGCACATGTCGGCTTCAGGGGTTGAACCAAATGCCTACACATATGCCGTCATCATCAAGGCTCTTGCTGCTGCTGACCTTAAGAAGAACCCCAATTTCGTTGTTTATGCCAAGAATTACTTTGTGGAGATGCTGGACAGGGGAATGCGGCCAAATGAGGAGACTTATGATGCAGTGTTGGAAGGCATTGGCCGCGGTGAGAACAAGGCTGAGGCTGAGGAAGAGCGCAGGGAGTTTGTGGAGAATGTGAAAGAAAAGGGGTTTGTGCTGGTGCTCCAGAAGGAGGCAGAGGAGATGGCTAAACCTCATCCATTGAAGTCTGAGATGGAAATGCTTAAGGAACATGTAATGATGGTGTTCGAGGATGCCACCAAAGATTGTGAAGACGAGAATGTGCAAGCAAGATTCAGAGAGATTGGGGAGGACTATGAATCACTGAGCAAATGCGCATTCGACCTTTTTAATGCTTTGGTACGTACAGGGCTCAACGAGGAAGCCAGAGAGCTATTTAAGCCCCTGTTGGAGACAGCGATACTGCCCGATGAGGCCATCTTCACCATTGTCATCCATATCTATGGAGCTGGCAACATCATGGGTCATGCTCTGAAGGCGTACCGGCACATGTTATCTTACGGGATCACCCCCAGCTCTTGCACTTACAATTTACTCATCGCAACACTTTCTCTTGATCCCAATTTCCTTGGGCATGCCAAGGAGTTATTTCTTGAAATGTTGGATAAGGGTATCAAGCCCTTTTCCGGAACCTTTATGGCTGTGTTCAATGGTATTGCTCGCCTGGAGTCATTGGAGAAGGGGAAGGAGTTGCTTGAGCAGATCAAGCCTAAGGGGGTCTTGCCTGTGCTGGACGAAGGCCGTTTCACTGAGGCAATGAAGGCTATGAAGTTGTATGATGATCTCGAGAAGAAGACCACTGACAAAGATGTTCAAGAAGTTATCCGCAATATCTACCTTAATGGCATGGAGGAAGAGTCAAGGGACATGTTCATTGCTATGGTAGAAGATGGCAATGTAGACGAGGCAATGAGGACATTTCAGTCAACAGGTCAGCCGCGCATCAATCCCATGGTCATAGTCCACACTGCTGTTATTGAAGCTTACATCAATGGTGGCAAGACTGAGGGTGCTCTCCAGACCTTCATGGACATGCTAGCAGCTGGACTTGCCCCAATATCCTACACTTACTCTGTTTTGATCAAGGGACTCGCTGCTGACCCCAACTTCTTTGGGGATGCCAAGAAGTATCTGATTGAGATGATGGACAAGGGTATGCATCCAAATGCTGCTACCTACACTGCAGTGTTTGAGGGCTTTGCAAGGGAGGATGACAAGGCAACTGAGGAGGAGGGTAAGAAATTTCTGGAGGTCATGATGGCCAAGGGTTTTGTACCTGACTCTGTGGCTGTGAGGATGGTGTTAACAGGCAGACCAACATCTGTGATTAGCAGGGTCATGAACATCATCCTTTTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

596

Amino Acids

66.66

Weight (kDa)

4.94

Isoelectric Point (pI)

31.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 72 - 122 1.4e-09 PPR repeat family
PPR_2 PF13041 279 - 325 4.2e-06 PPR repeat family
PPR_2 PF13041 462 - 508 1.6e-08 PPR repeat family
TPR_24 PF23276 463 - 548 7.3e-06 Fungal tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 236, 1351
Acc16I TGCGCA 1 cut(s) 745
AccB1I GGYRCC 1 cut(s) 211
AccI GTMKAC 1 cut(s) 1329
AccII CGCG 2 cut(s) 492, 1369
AccIII TCCGGA 1 cut(s) 1055
AciI CCGC 8 cut(s) 5, 62, 261, 445, 490, 492, 1255, 1367
AclWI GGATC 2 cut(s) 941, 980
AcoI YGGCCR 3 cut(s) 446, 487, 1689
AcsI RAATTY 1 cut(s) 1670
AcuI CTGAAG 2 cut(s) 297, 923
AfaI GTAC 6 cut(s) 100, 248, 771, 775, 911, 1704
AfiI CCNNNNNNNGG 2 cut(s) 580, 1055
AflII CTTAAG 2 cut(s) 377, 632
AflIII ACRYGT 4 cut(s) 303, 640, 918, 1296
AgsI TTSAA 7 cut(s) 298, 323, 613, 1025, 1078, 1244, 1409
AjnI CCWGG 3 cut(s) 51, 102, 1092
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AleI CACNNNNGTG 1 cut(s) 1613
AluBI AGCT 6 cut(s) 110, 802, 878, 945, 1412, 1472
AluI AGCT 6 cut(s) 110, 802, 878, 945, 1412, 1472
Alw21I GWGCWC 2 cut(s) 573, 1444
Alw26I GTCTC 3 cut(s) 147, 452, 815
AlwI GGATC 2 cut(s) 941, 980
Ama87I CYCGRG 2 cut(s) 216, 1214
Aor13HI TCCGGA 1 cut(s) 1055
AoxI GGCC 6 cut(s) 171, 446, 487, 843, 1168, 1689
ApeKI GCWGC 7 cut(s) 38, 41, 365, 368, 1469, 1523, 1598
ApoI RAATTY 1 cut(s) 1670
AspLEI GCGC 3 cut(s) 525, 746, 1371
AspS9I GGNCC 1 cut(s) 273
AsuHPI GGTGA 4 cut(s) 217, 506, 844, 928
AsuNHI GCTAGC 1 cut(s) 1465
AvaI CYCGRG 2 cut(s) 216, 1214
AvaII GGWCC 1 cut(s) 273
AxyI CCTNAGG 1 cut(s) 1140
BalI TGGCCA 1 cut(s) 1691
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 783
BbsI GAAGAC 2 cut(s) 687, 1229
Bbv12I GWGCWC 2 cut(s) 573, 1444
BbvCI CCTCAGC 2 cut(s) 507, 513
BbvI GCAGC 7 cut(s) 25, 28, 352, 355, 1481, 1510, 1585
BccI CCATC 9 cut(s) 127, 586, 616, 643, 854, 1313, 1567, 1681, 1720
BceAI ACGGC 3 cut(s) 172, 329, 1155
BciT130I CCWGG 3 cut(s) 53, 104, 1094
BclI TGATCA 2 cut(s) 114, 1509
BcoDI GTCTC 3 cut(s) 147, 452, 815
BfaI CTAG 1 cut(s) 1466
BfmI CTRYAG 1 cut(s) 1611
BfrI CTTAAG 2 cut(s) 377, 632
BmcAI AGTACT 1 cut(s) 248
Bme1390I CCNGG 3 cut(s) 53, 104, 1094
Bme18I GGWCC 1 cut(s) 273
BmeT110I CYCGRG 2 cut(s) 216, 1214
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 3 cut(s) 187, 213, 1060
BmrFI CCNGG 3 cut(s) 53, 104, 1094
BmsI GCATC 8 cut(s) 84, 271, 417, 457, 652, 1380, 1537, 1597
BmtI GCTAGC 1 cut(s) 1469
BpiI GAAGAC 2 cut(s) 687, 1229
BpmI CTGGAG 5 cut(s) 74, 557, 1115, 1430, 1697
Bpu10I CCTNAGC 2 cut(s) 507, 513
BpuEI CTTGAG 1 cut(s) 1145
BsaAI YACGTR 1 cut(s) 773
BsaJI CCNNGG 9 cut(s) 102, 174, 215, 276, 490, 997, 1008, 1380, 1692
BsaWI WCCGGW 1 cut(s) 1055
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 1271, 1301
Bsc4I CCNNNNNNNGG 2 cut(s) 580, 1055
Bse118I RCCGGY 1 cut(s) 912
Bse21I CCTNAGG 1 cut(s) 1140
Bse3DI GCAATG 4 cut(s) 1191, 1302, 1330, 1344
BseAI TCCGGA 1 cut(s) 1055
BseBI CCWGG 3 cut(s) 53, 104, 1094
BseDI CCNNGG 9 cut(s) 102, 174, 215, 276, 490, 997, 1008, 1380, 1692
BseGI GGATG 9 cut(s) 286, 604, 667, 861, 1552, 1588, 1645, 1731, 1776
BseLI CCNNNNNNNGG 2 cut(s) 580, 1055
BseMI GCAATG 4 cut(s) 1191, 1302, 1330, 1344
BseMII CTCAG 8 cut(s) 301, 498, 504, 609, 725, 1170, 1425, 1644
BseRI GAGGAG 4 cut(s) 470, 602, 1670, 1673
BseXI GCAGC 7 cut(s) 25, 28, 352, 355, 1481, 1510, 1585
BseYI CCCAGC 1 cut(s) 941
Bsh1236I CGCG 2 cut(s) 492, 1369
BshFI GGCC 6 cut(s) 173, 448, 489, 845, 1170, 1691
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 2 cut(s) 573, 1444
BsiHKCI CYCGRG 2 cut(s) 216, 1214
BsiSI CCGG 3 cut(s) 65, 913, 1056
BslFI GGGAC 3 cut(s) 281, 1307, 1530
BslI CCNNNNNNNGG 2 cut(s) 580, 1055
BsmAI GTCTC 3 cut(s) 147, 452, 815
BsmBI CGTCTC 1 cut(s) 147
BsmFI GGGAC 3 cut(s) 281, 1307, 1530
BsmI GAATGC 2 cut(s) 447, 746
BsnI GGCC 6 cut(s) 173, 448, 489, 845, 1170, 1691
BsoBI CYCGRG 2 cut(s) 216, 1214
Bsp1286I GDGCHC 3 cut(s) 573, 783, 1444
Bsp13I TCCGGA 1 cut(s) 1055
Bsp143I GATC 6 cut(s) 114, 933, 985, 1131, 1210, 1509
Bsp19I CCATGG 1 cut(s) 1380
BspACI CCGC 8 cut(s) 5, 62, 261, 445, 490, 492, 1255, 1367
BspANI GGCC 6 cut(s) 173, 448, 489, 845, 1170, 1691
BspCNI CTCAG 8 cut(s) 300, 499, 505, 610, 726, 1171, 1426, 1645
BspEI TCCGGA 1 cut(s) 1055
BspFNI CGCG 2 cut(s) 492, 1369
BspHI TCATGA 3 cut(s) 162, 1683, 1767
BspLI GGNNCC 3 cut(s) 187, 213, 1060
BspMAI CTGCAG 1 cut(s) 1615
BspOI GCTAGC 1 cut(s) 1469
BspPI GGATC 2 cut(s) 941, 980
BspQI GCTCTTC 1 cut(s) 513
BspT107I GGYRCC 1 cut(s) 211
BspTI CTTAAG 2 cut(s) 377, 632
BsrDI GCAATG 4 cut(s) 1191, 1302, 1330, 1344
BsrFI RCCGGY 1 cut(s) 912
BssAI RCCGGY 1 cut(s) 912
BssECI CCNNGG 9 cut(s) 102, 174, 215, 276, 490, 997, 1008, 1380, 1692
BssMI GATC 6 cut(s) 114, 933, 985, 1131, 1210, 1509
BssT1I CCWWGG 6 cut(s) 174, 276, 997, 1008, 1380, 1692
Bst2UI CCWGG 3 cut(s) 53, 104, 1094
Bst6I CTCTTC 2 cut(s) 513, 1278
BstAFI CTTAAG 2 cut(s) 377, 632
BstBAI YACGTR 1 cut(s) 773
BstC8I GCNNGC 5 cut(s) 696, 880, 1005, 1090, 1467
BstDEI CTNAG 9 cut(s) 287, 507, 513, 618, 734, 1140, 1179, 1434, 1653
BstDSI CCRYGG 2 cut(s) 490, 1380
BstF5I GGATG 9 cut(s) 286, 604, 667, 861, 1552, 1588, 1645, 1731, 1776
BstFNI CGCG 2 cut(s) 492, 1369
BstHHI GCGC 3 cut(s) 525, 746, 1371
BstKTI GATC 6 cut(s) 117, 936, 988, 1134, 1213, 1512
BstMAI GTCTC 3 cut(s) 147, 452, 815
BstMBI GATC 6 cut(s) 114, 933, 985, 1131, 1210, 1509
BstMWI GCNNNNNNNGC 8 cut(s) 35, 365, 489, 808, 905, 1135, 1190, 1478
BstNI CCWGG 3 cut(s) 53, 104, 1094
BstNSI RCATGY 6 cut(s) 307, 644, 922, 1007, 1300, 1465
BstSCI CCNGG 3 cut(s) 51, 102, 1092
BstSFI CTRYAG 1 cut(s) 1611
BstSNI TACGTA 1 cut(s) 773
BstUI CGCG 2 cut(s) 492, 1369
BstV1I GCAGC 7 cut(s) 25, 28, 352, 355, 1481, 1510, 1585
BstV2I GAAGAC 2 cut(s) 687, 1229
BstXI CCANNNNNNTGG 2 cut(s) 136, 872
Bsu36I CCTNAGG 1 cut(s) 1140
BsuRI GGCC 6 cut(s) 173, 448, 489, 845, 1170, 1691
BtgI CCRYGG 2 cut(s) 490, 1380
BtgZI GCGATG 1 cut(s) 952
BtsCI GGATG 9 cut(s) 286, 604, 667, 861, 1552, 1588, 1645, 1731, 1776
BtsI GCAGTG 5 cut(s) 231, 477, 1395, 1608, 1620
BtsIMutI CAGTG 8 cut(s) 231, 477, 731, 1176, 1227, 1395, 1608, 1620
Cac8I GCNNGC 5 cut(s) 696, 880, 1005, 1090, 1467
CciI TCATGA 3 cut(s) 162, 1683, 1767
CfoI GCGC 3 cut(s) 525, 746, 1371
Cfr10I RCCGGY 1 cut(s) 912
Cfr13I GGNCC 1 cut(s) 273
Cfr42I CCGCGG 1 cut(s) 493
Csp6I GTAC 6 cut(s) 99, 247, 770, 774, 910, 1703
CviQI GTAC 6 cut(s) 99, 247, 770, 774, 910, 1703
DdeI CTNAG 9 cut(s) 287, 507, 513, 618, 734, 1140, 1179, 1434, 1653
DpnI GATC 6 cut(s) 116, 935, 987, 1133, 1212, 1511
DpnII GATC 6 cut(s) 114, 933, 985, 1131, 1210, 1509
DrdI GACNNNNNNGTC 2 cut(s) 236, 1351
DseDI GACNNNNNNGTC 2 cut(s) 236, 1351
EaeI YGGCCR 3 cut(s) 446, 487, 1689
Eam1104I CTCTTC 2 cut(s) 513, 1278
EarI CTCTTC 2 cut(s) 513, 1278
EciI GGCGGA 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 773
Eco130I CCWWGG 6 cut(s) 174, 276, 997, 1008, 1380, 1692
Eco24I GRGCYC 1 cut(s) 783
Eco47I GGWCC 1 cut(s) 273
Eco57I CTGAAG 2 cut(s) 297, 923
Eco81I CCTNAGG 1 cut(s) 1140
Eco88I CYCGRG 2 cut(s) 216, 1214
EcoRII CCWGG 3 cut(s) 51, 102, 1092
EcoT14I CCWWGG 6 cut(s) 174, 276, 997, 1008, 1380, 1692
EcoT22I ATGCAT 1 cut(s) 1590
EcoT38I GRGCYC 1 cut(s) 783
ErhI CCWWGG 6 cut(s) 174, 276, 997, 1008, 1380, 1692
Esp3I CGTCTC 1 cut(s) 147
FalI AAGNNNNNCTT 4 cut(s) 401, 433, 1133, 1165
FaqI GGGAC 3 cut(s) 281, 1307, 1530
FauNDI CATATG 1 cut(s) 340
FbaI TGATCA 2 cut(s) 114, 1509
FblI GTMKAC 1 cut(s) 1329
FokI GGATG 9 cut(s) 293, 591, 674, 848, 1559, 1575, 1652, 1738, 1763
FriOI GRGCYC 1 cut(s) 783
FspAI RTGCGCAY 1 cut(s) 745
FspBI CTAG 1 cut(s) 1466
FspI TGCGCA 1 cut(s) 745
GlaI GCGC 3 cut(s) 524, 745, 1370
GsaI CCCAGC 1 cut(s) 945
GsuI CTGGAG 5 cut(s) 74, 557, 1115, 1430, 1697
HaeIII GGCC 6 cut(s) 173, 448, 489, 845, 1170, 1691
HapII CCGG 3 cut(s) 65, 913, 1056
HhaI GCGC 3 cut(s) 525, 746, 1371
Hin6I GCGC 3 cut(s) 523, 744, 1369
HinP1I GCGC 3 cut(s) 523, 744, 1369
HincII GTYRAC 2 cut(s) 1356, 1734
HindII GTYRAC 2 cut(s) 1356, 1734
HindIII AAGCTT 1 cut(s) 1410
HinfI GANTC 8 cut(s) 32, 193, 702, 728, 1097, 1286, 1518, 1709
HpaI GTTAAC 1 cut(s) 1734
HpaII CCGG 3 cut(s) 65, 913, 1056
HphI GGTGA 4 cut(s) 217, 506, 844, 928
Hpy166II GTNNAC 4 cut(s) 1330, 1356, 1393, 1734
Hpy188I TCNGA 6 cut(s) 114, 290, 619, 707, 903, 1563
Hpy8I GTNNAC 4 cut(s) 1330, 1356, 1393, 1734
HpyAV CCTTC 8 cut(s) 473, 571, 898, 1102, 1108, 1160, 1183, 1462
HpyCH4IV ACGT 3 cut(s) 168, 252, 772
HpyCH4V TGCA 6 cut(s) 470, 694, 951, 1588, 1613, 1631
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 365, 489, 808, 905, 1135, 1190, 1478
HpyF3I CTNAG 9 cut(s) 287, 507, 513, 618, 734, 1140, 1179, 1434, 1653
HpySE526I ACGT 3 cut(s) 168, 252, 772
HspAI GCGC 3 cut(s) 523, 744, 1369
Kpn2I TCCGGA 1 cut(s) 1055
Ksp22I TGATCA 2 cut(s) 114, 1509
KspAI GTTAAC 1 cut(s) 1734
KspI CCGCGG 1 cut(s) 493
Kzo9I GATC 6 cut(s) 114, 933, 985, 1131, 1210, 1509
LguI GCTCTTC 1 cut(s) 513
LmnI GCTCC 3 cut(s) 185, 576, 875
Lsp1109I GCAGC 7 cut(s) 25, 28, 352, 355, 1481, 1510, 1585
LweI GCATC 8 cut(s) 84, 271, 417, 457, 652, 1380, 1537, 1597
MaeI CTAG 1 cut(s) 1466
MaeII ACGT 3 cut(s) 168, 252, 772
MaeIII GTNAC 1 cut(s) 223
MalI GATC 6 cut(s) 116, 935, 987, 1133, 1212, 1511
MboI GATC 6 cut(s) 114, 933, 985, 1131, 1210, 1509
MboII GAAGA 8 cut(s) 394, 530, 692, 841, 1231, 1234, 1295, 1328
MhlI GDGCHC 3 cut(s) 573, 783, 1444
MlsI TGGCCA 1 cut(s) 1691
MluCI AATT 5 cut(s) 391, 412, 958, 991, 1670
MluNI TGGCCA 1 cut(s) 1691
MlyI GAGTC 4 cut(s) 1106, 1295, 1512, 1703
MmeI TCCRAC 3 cut(s) 456, 798, 1011
Mox20I TGGCCA 1 cut(s) 1691
Mph1103I ATGCAT 1 cut(s) 1590
MroI TCCGGA 1 cut(s) 1055
MscI TGGCCA 1 cut(s) 1691
MseI TTAA 7 cut(s) 149, 378, 633, 759, 807, 1269, 1733
MslI CAYNNNNRTG 6 cut(s) 167, 870, 1307, 1460, 1593, 1613
Msp20I TGGCCA 1 cut(s) 1691
MspA1I CMGCKG 2 cut(s) 492, 1472
MspCI CTTAAG 2 cut(s) 377, 632
MspI CCGG 3 cut(s) 65, 913, 1056
MspR9I CCNGG 3 cut(s) 53, 104, 1094
Mva1269I GAATGC 2 cut(s) 447, 746
MvaI CCWGG 3 cut(s) 53, 104, 1094
MvnI CGCG 2 cut(s) 492, 1369
MwoI GCNNNNNNNGC 8 cut(s) 35, 365, 489, 808, 905, 1135, 1190, 1478
NcoI CCATGG 1 cut(s) 1380
NdeI CATATG 1 cut(s) 340
NdeII GATC 6 cut(s) 114, 933, 985, 1131, 1210, 1509
NheI GCTAGC 1 cut(s) 1465
NlaIV GGNNCC 3 cut(s) 187, 213, 1060
NmuCI GTSAC 1 cut(s) 223
NsbI TGCGCA 1 cut(s) 745
NsiI ATGCAT 1 cut(s) 1590
NspI RCATGY 6 cut(s) 307, 644, 922, 1007, 1300, 1465
OliI CACNNNNGTG 1 cut(s) 1613
PaeI GCATGC 1 cut(s) 1007
PaeR7I CTCGAG 1 cut(s) 1214
PagI TCATGA 3 cut(s) 162, 1683, 1767
PciI ACATGT 4 cut(s) 303, 640, 918, 1296
PciSI GCTCTTC 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 2 cut(s) 447, 746
PfeI GAWTC 4 cut(s) 32, 193, 702, 728
PleI GAGTC 4 cut(s) 1105, 1294, 1512, 1703
PpsI GAGTC 4 cut(s) 1105, 1294, 1512, 1703
Ppu21I YACGTR 1 cut(s) 773
PscI ACATGT 4 cut(s) 303, 640, 918, 1296
Psp6I CCWGG 3 cut(s) 51, 102, 1092
PspFI CCCAGC 1 cut(s) 941
PspGI CCWGG 3 cut(s) 51, 102, 1092
PspN4I GGNNCC 3 cut(s) 187, 213, 1060
PspPI GGNCC 1 cut(s) 273
PstI CTGCAG 1 cut(s) 1615
PvuII CAGCTG 1 cut(s) 1472
RsaI GTAC 6 cut(s) 100, 248, 771, 775, 911, 1704
RsaNI GTAC 6 cut(s) 99, 247, 770, 774, 910, 1703
RseI CAYNNNNRTG 6 cut(s) 167, 870, 1307, 1460, 1593, 1613
SacII CCGCGG 1 cut(s) 493
SapI GCTCTTC 1 cut(s) 513
SaqAI TTAA 7 cut(s) 149, 378, 633, 759, 807, 1269, 1733
Sau3AI GATC 6 cut(s) 114, 933, 985, 1131, 1210, 1509
Sau96I GGNCC 1 cut(s) 273
ScaI AGTACT 1 cut(s) 248
SchI GAGTC 4 cut(s) 1106, 1295, 1512, 1703
ScrFI CCNGG 3 cut(s) 53, 104, 1094
SduI GDGCHC 3 cut(s) 573, 783, 1444
SfaNI GCATC 8 cut(s) 84, 271, 417, 457, 652, 1380, 1537, 1597
SfcI CTRYAG 1 cut(s) 1611
Sfr274I CTCGAG 1 cut(s) 1214
Sfr303I CCGCGG 1 cut(s) 493
SgrBI CCGCGG 1 cut(s) 493
SinI GGWCC 1 cut(s) 273
SlaI CTCGAG 1 cut(s) 1214
SmiMI CAYNNNNRTG 6 cut(s) 167, 870, 1307, 1460, 1593, 1613
SmlI CTYRAG 4 cut(s) 377, 632, 1124, 1214
SmoI CTYRAG 4 cut(s) 377, 632, 1124, 1214
SnaBI TACGTA 1 cut(s) 773
SphI GCATGC 1 cut(s) 1007
Sse9I AATT 5 cut(s) 391, 412, 958, 991, 1670
SsiI CCGC 8 cut(s) 5, 62, 261, 445, 490, 492, 1255, 1367
SspMI CTAG 1 cut(s) 1466
StyD4I CCNGG 3 cut(s) 51, 102, 1092
StyI CCWWGG 6 cut(s) 174, 276, 997, 1008, 1380, 1692
TaiI ACGT 3 cut(s) 171, 255, 775
TaqI TCGA 5 cut(s) 243, 657, 750, 1215, 1785
TasI AATT 5 cut(s) 391, 412, 958, 991, 1670
TatI WGTACW 1 cut(s) 246
TauI GCSGC 5 cut(s) 64, 263, 448, 492, 1369
TfiI GAWTC 4 cut(s) 32, 193, 702, 728
Tru1I TTAA 7 cut(s) 149, 378, 633, 759, 807, 1269, 1733
Tru9I TTAA 7 cut(s) 149, 378, 633, 759, 807, 1269, 1733
TscAI CASTG 8 cut(s) 238, 477, 738, 1183, 1234, 1402, 1615, 1620
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 7 cut(s) 38, 41, 365, 368, 1469, 1523, 1598
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 8 cut(s) 151, 179, 741, 1202, 1211, 1291, 1444, 1784
TspRI CASTG 8 cut(s) 238, 477, 738, 1183, 1234, 1402, 1615, 1620
Vha464I CTTAAG 2 cut(s) 377, 632
VpaK11BI GGWCC 1 cut(s) 273
XapI RAATTY 1 cut(s) 1670
XceI RCATGY 6 cut(s) 307, 644, 922, 1007, 1300, 1465
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XhoI CTCGAG 1 cut(s) 1214
XmiI GTMKAC 1 cut(s) 1329
XspI CTAG 1 cut(s) 1466
ZrmI AGTACT 1 cut(s) 248
Zsp2I ATGCAT 1 cut(s) 1590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.