RchiOBHm_Chr7g0235921

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000101
Physical Location & Seq
Forward (+)
60828447 .. 60830291
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21142

Sequence Viewer

Length: 1251 bp
ATGAGATCAATGGCGGAAACTAGTTCCCCCAATTCTTCTGCTGATGACCTCAAGAACCATGTAATGAAGATTTTCGAGGAAGCCACCAAAGACTGTGAGGACGAGTGCTTGAAAGCAGTATTTGGCACCATTGGGAGGAGCTACGATTCCCTTAACGATTTTTCGATTACGTTGTTCAATTCTATGGCAGATACCGGCATCATTGACAGAGCCAGAGAGATGTTTAAGCCTGTCTCTGACTTAGGCCTTCTGTCTCCAGTGGCTGTCTTCACCATTGTGATTATGCTCTATGCCGCTGAGCGCAAGGCCAAGAGTGCTCTCAAGGTTTTCCAGCTCATGGTAGCCACTGGTGTCAACCCCGCCTGCTACACTTATGTTCAACTCATCACTGTACTTGCAACAGACTTTTCCAATGTAAAGTTCCTTAGGTATGCCAAGAAGTATTTTCTTGAGATGTTGGATAAGGGGATGAAGCCCAGTCCTACACCCTTCTGGAAGATTATGGAGGCCATTGCCTACCGAGAGCCAGTGGAGAAGGCCAAGGAGTTCCTTGAGCAGATAAAAGCCAAGGCGTTCATGCCTTCCGACAGTGGTTTTCACTACAAAGAAGCCTACCTCGCCGAAGGAATGCAAACACTGAAGATGTATGCTGATCTTGTCCACAATGAGACCATTGACAAGGATGTTAGAAAGTACTTCTACATGTTGCGCGCCTTCACTGGCCATGCTGAAAAACTGACGAACAAGATGTACAGTGCTTTGGTAGAGGATGGAAATGTAGACGAGGCCACAGAGTTCTTTAACGAAGTTGAGGAGACGGGTATAGAGCCCATGGTCGTAATCCACACCACTGTTATTGAAGCCTACCTCTCGTTTGGCAAGACCAAGGGTGCTCTGGAGGCATACCAGGCCATGTTAGCTGCTGGGGTTGCCCCCAACTCCTACACTTACACCGTTTTAATCAAGGGACTCAGTGCTGACCCCAACTTCTTTGGAGATGCCAAGAAGTATTTGCTCGAGATGATGGACAAGGGGAAGCGGCCCAATGCTGCTACCTTCACTGCGGTGATAGAGGGCTTTGCAAAGCAGGAGGGCAAGGCAGCTGAGGAGGAGGGAAAAGAGTTTGTGCAGGTAATGATGGATAAGGGGTTTGTGCCTAATGCGAAGGCAATGATGGAGGTTTTAAAGGGTAGACCAACATTGGTAATTAGAAGTGCCATGAGTATTGTCCTTTCCACCTTGAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

416

Amino Acids

46.54

Weight (kDa)

5.77

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 87 - 133 6.2e-06 PPR repeat family
TPR_24 PF23276 258 - 365 3.1e-09 Fungal tetratrico peptide repeats
PPR_3 PF13812 267 - 322 1.3e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 278 - 324 2.4e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1120
AccB1I GGYRCC 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 337
AccI GTMKAC 2 cut(s) 780, 1192
AccII CGCG 1 cut(s) 711
AciI CCGC 5 cut(s) 14, 294, 360, 1039, 1064
AcoI YGGCCR 1 cut(s) 721
AcuI CTGAAG 1 cut(s) 659
AfaI GTAC 3 cut(s) 393, 695, 752
AfiI CCNNNNNNNGG 2 cut(s) 135, 337
AflIII ACRYGT 1 cut(s) 702
AgsI TTSAA 5 cut(s) 112, 178, 380, 860, 1243
AhlI ACTAGT 1 cut(s) 20
AjnI CCWGG 1 cut(s) 906
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
AleI CACNNNNGTG 2 cut(s) 275, 1064
AluBI AGCT 4 cut(s) 141, 334, 920, 1103
AluI AGCT 4 cut(s) 141, 334, 920, 1103
Alw21I GWGCWC 2 cut(s) 319, 895
Alw26I GTCTC 4 cut(s) 238, 258, 662, 809
AlwNI CAGNNNCTG 1 cut(s) 263
Ama87I CYCGRG 1 cut(s) 1016
AoxI GGCC 8 cut(s) 244, 306, 507, 537, 721, 786, 909, 1040
ApeKI GCWGC 3 cut(s) 920, 1049, 1100
Asp700I GAANNNNTTC 1 cut(s) 71
AspLEI GCGC 3 cut(s) 303, 711, 713
AspS9I GGNCC 1 cut(s) 1041
AsuHPI GGTGA 2 cut(s) 262, 1078
AvaI CYCGRG 1 cut(s) 1016
AxyI CCTNAGG 1 cut(s) 425
BalI TGGCCA 1 cut(s) 723
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 831
BbsI GAAGAC 1 cut(s) 259
Bbv12I GWGCWC 2 cut(s) 319, 895
BbvCI CCTCAGC 1 cut(s) 1104
BbvI GCAGC 3 cut(s) 907, 1036, 1112
BccI CCATC 4 cut(s) 764, 1018, 1132, 1168
BciT130I CCWGG 1 cut(s) 908
BcoDI GTCTC 4 cut(s) 238, 258, 662, 809
BcuI ACTAGT 1 cut(s) 20
BfaI CTAG 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 1120
BisI GCNGC 5 cut(s) 294, 921, 1040, 1050, 1101
BlpI GCTNAGC 1 cut(s) 297
BlsI GCNGC 5 cut(s) 295, 922, 1041, 1051, 1102
BmcAI AGTACT 1 cut(s) 695
Bme1390I CCNGG 1 cut(s) 908
BmeT110I CYCGRG 1 cut(s) 1016
BmgT120I GGNCC 1 cut(s) 1041
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 908
BmrI ACTGGG 1 cut(s) 471
BmsI GCATC 2 cut(s) 207, 988
BmuI ACTGGG 1 cut(s) 471
BpiI GAAGAC 1 cut(s) 259
BpmI CTGGAG 2 cut(s) 240, 917
Bpu10I CCTNAGC 1 cut(s) 1104
Bpu1102I GCTNAGC 1 cut(s) 297
BpuEI CTTGAG 4 cut(s) 35, 305, 470, 572
BsaI GGTCTC 1 cut(s) 662
BsaJI CCNNGG 4 cut(s) 540, 567, 831, 885
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 337
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 5 cut(s) 257, 352, 477, 527, 724
Bse21I CCTNAGG 1 cut(s) 425
Bse3DI GCAATG 2 cut(s) 510, 1176
BseBI CCWGG 1 cut(s) 908
BseDI CCNNGG 4 cut(s) 540, 567, 831, 885
BseGI GGATG 3 cut(s) 474, 688, 775
BseLI CCNNNNNNNGG 2 cut(s) 135, 337
BseMI GCAATG 2 cut(s) 510, 1176
BseMII CTCAG 3 cut(s) 288, 985, 1095
BseNI ACTGG 5 cut(s) 257, 352, 477, 527, 724
BsePI GCGCGC 1 cut(s) 709
BseRI GAGGAG 4 cut(s) 151, 827, 1121, 1124
BseXI GCAGC 3 cut(s) 907, 1036, 1112
BseYI CCCAGC 1 cut(s) 923
BsgI GTGCAG 1 cut(s) 1148
Bsh1236I CGCG 1 cut(s) 711
BshFI GGCC 8 cut(s) 246, 308, 509, 539, 723, 788, 911, 1042
BshNI GGYRCC 1 cut(s) 125
BsiHKAI GWGCWC 2 cut(s) 319, 895
BsiHKCI CYCGRG 1 cut(s) 1016
BsiSI CCGG 1 cut(s) 195
BslFI GGGAC 1 cut(s) 981
BslI CCNNNNNNNGG 2 cut(s) 135, 337
BsmAI GTCTC 4 cut(s) 238, 258, 662, 809
BsmBI CGTCTC 1 cut(s) 809
BsmFI GGGAC 1 cut(s) 981
BsmI GAATGC 1 cut(s) 633
BsnI GGCC 8 cut(s) 246, 308, 509, 539, 723, 788, 911, 1042
Bso31I GGTCTC 1 cut(s) 662
BsoBI CYCGRG 1 cut(s) 1016
Bsp1286I GDGCHC 3 cut(s) 319, 831, 895
Bsp1407I TGTACA 1 cut(s) 750
Bsp143I GATC 2 cut(s) 5, 652
Bsp1720I GCTNAGC 1 cut(s) 297
Bsp19I CCATGG 1 cut(s) 831
BspACI CCGC 5 cut(s) 14, 294, 360, 1039, 1064
BspANI GGCC 8 cut(s) 246, 308, 509, 539, 723, 788, 911, 1042
BspCNI CTCAG 3 cut(s) 289, 984, 1096
BspFNI CGCG 1 cut(s) 711
BspLI GGNNCC 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 1120
BspT107I GGYRCC 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 662
BsrDI GCAATG 2 cut(s) 510, 1176
BsrFI RCCGGY 1 cut(s) 194
BsrGI TGTACA 1 cut(s) 750
BsrI ACTGG 5 cut(s) 257, 352, 477, 527, 724
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 4 cut(s) 540, 567, 831, 885
BssHII GCGCGC 1 cut(s) 709
BssMI GATC 2 cut(s) 5, 652
BssT1I CCWWGG 4 cut(s) 540, 567, 831, 885
Bst2UI CCWGG 1 cut(s) 908
Bst4CI ACNGT 6 cut(s) 95, 391, 590, 755, 853, 955
BstAUI TGTACA 1 cut(s) 750
BstC8I GCNNGC 2 cut(s) 364, 711
BstDEI CTNAG 5 cut(s) 241, 297, 425, 971, 1104
BstDSI CCRYGG 1 cut(s) 831
BstF5I GGATG 3 cut(s) 474, 688, 775
BstFNI CGCG 1 cut(s) 711
BstHHI GCGC 3 cut(s) 303, 711, 713
BstKTI GATC 2 cut(s) 8, 655
BstMAI GTCTC 4 cut(s) 238, 258, 662, 809
BstMBI GATC 2 cut(s) 5, 652
BstMWI GCNNNNNNNGC 6 cut(s) 314, 617, 899, 908, 917, 929
BstNI CCWGG 1 cut(s) 908
BstNSI RCATGY 1 cut(s) 706
BstSCI CCNGG 1 cut(s) 906
BstUI CGCG 1 cut(s) 711
BstV1I GCAGC 3 cut(s) 907, 1036, 1112
BstV2I GAAGAC 1 cut(s) 259
Bsu36I CCTNAGG 1 cut(s) 425
BsuRI GGCC 8 cut(s) 246, 308, 509, 539, 723, 788, 911, 1042
BtgI CCRYGG 1 cut(s) 831
BtsCI GGATG 3 cut(s) 474, 688, 775
BtsI GCAGTG 1 cut(s) 1059
BveI ACCTGC 1 cut(s) 1120
Cac8I GCNNGC 2 cut(s) 364, 711
CaiI CAGNNNCTG 1 cut(s) 263
CfoI GCGC 3 cut(s) 303, 711, 713
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 1041
Csp6I GTAC 3 cut(s) 392, 694, 751
CspCI CAANNNNNGTGG 2 cut(s) 838, 873
CviAII CATG 8 cut(s) 59, 337, 577, 703, 725, 832, 913, 1219
CviQI GTAC 3 cut(s) 392, 694, 751
DdeI CTNAG 5 cut(s) 241, 297, 425, 971, 1104
DpnI GATC 2 cut(s) 7, 654
DpnII GATC 2 cut(s) 5, 652
DraI TTTAAA 1 cut(s) 1185
EaeI YGGCCR 1 cut(s) 721
EciI GGCGGA 1 cut(s) 29
Eco130I CCWWGG 4 cut(s) 540, 567, 831, 885
Eco147I AGGCCT 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 831
Eco31I GGTCTC 1 cut(s) 662
Eco57I CTGAAG 1 cut(s) 659
Eco81I CCTNAGG 1 cut(s) 425
Eco88I CYCGRG 1 cut(s) 1016
EcoRII CCWGG 1 cut(s) 906
EcoT14I CCWWGG 4 cut(s) 540, 567, 831, 885
EcoT38I GRGCYC 1 cut(s) 831
ErhI CCWWGG 4 cut(s) 540, 567, 831, 885
Esp3I CGTCTC 1 cut(s) 809
FaeI CATG 8 cut(s) 62, 340, 580, 706, 728, 835, 916, 1222
FaqI GGGAC 1 cut(s) 981
FatI CATG 8 cut(s) 58, 336, 576, 702, 724, 831, 912, 1218
FauI CCCGC 1 cut(s) 367
FblI GTMKAC 2 cut(s) 780, 1192
Fnu4HI GCNGC 5 cut(s) 294, 921, 1040, 1050, 1101
FokI GGATG 3 cut(s) 481, 695, 782
FriOI GRGCYC 1 cut(s) 831
Fsp4HI GCNGC 5 cut(s) 294, 921, 1040, 1050, 1101
FspBI CTAG 1 cut(s) 21
GlaI GCGC 3 cut(s) 302, 710, 712
GluI GCNGC 5 cut(s) 294, 921, 1040, 1050, 1101
GsaI CCCAGC 1 cut(s) 927
GsuI CTGGAG 2 cut(s) 240, 917
HaeIII GGCC 8 cut(s) 246, 308, 509, 539, 723, 788, 911, 1042
HapII CCGG 1 cut(s) 195
HhaI GCGC 3 cut(s) 303, 711, 713
Hin1II CATG 8 cut(s) 62, 340, 580, 706, 728, 835, 916, 1222
Hin6I GCGC 3 cut(s) 301, 709, 711
HinP1I GCGC 3 cut(s) 301, 709, 711
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HinfI GANTC 2 cut(s) 146, 969
HpaII CCGG 1 cut(s) 195
HphI GGTGA 2 cut(s) 262, 1078
Hpy166II GTNNAC 4 cut(s) 355, 661, 781, 1193
Hpy188I TCNGA 2 cut(s) 238, 586
Hpy188III TCNNGA 5 cut(s) 52, 449, 493, 896, 1018
Hpy8I GTNNAC 4 cut(s) 355, 661, 781, 1193
HpyAV CCTTC 8 cut(s) 257, 499, 529, 591, 617, 724, 1066, 1159
HpyCH4III ACNGT 6 cut(s) 95, 391, 590, 755, 853, 955
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 4 cut(s) 398, 631, 1082, 1129
HpyF10VI GCNNNNNNNGC 6 cut(s) 314, 617, 899, 908, 917, 929
HpyF3I CTNAG 5 cut(s) 241, 297, 425, 971, 1104
HpySE526I ACGT 1 cut(s) 170
Hsp92II CATG 8 cut(s) 62, 340, 580, 706, 728, 835, 916, 1222
HspAI GCGC 3 cut(s) 301, 709, 711
Kzo9I GATC 2 cut(s) 5, 652
LmnI GCTCC 1 cut(s) 138
Lsp1109I GCAGC 3 cut(s) 907, 1036, 1112
LweI GCATC 2 cut(s) 207, 988
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 170
MalI GATC 2 cut(s) 7, 654
MboI GATC 2 cut(s) 5, 652
MboII GAAGA 5 cut(s) 27, 79, 259, 508, 652
MhlI GDGCHC 3 cut(s) 319, 831, 895
MlsI TGGCCA 1 cut(s) 723
MluCI AATT 3 cut(s) 31, 178, 1206
MluNI TGGCCA 1 cut(s) 723
MlyI GAGTC 1 cut(s) 963
MmeI TCCRAC 2 cut(s) 438, 609
Mox20I TGGCCA 1 cut(s) 723
MroXI GAANNNNTTC 1 cut(s) 71
MscI TGGCCA 1 cut(s) 723
MseI TTAA 5 cut(s) 153, 225, 801, 959, 1184
MslI CAYNNNNRTG 2 cut(s) 275, 1064
Msp20I TGGCCA 1 cut(s) 723
MspA1I CMGCKG 2 cut(s) 296, 1103
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 908
Mva1269I GAATGC 1 cut(s) 633
MvaI CCWGG 1 cut(s) 908
MvnI CGCG 1 cut(s) 711
MwoI GCNNNNNNNGC 6 cut(s) 314, 617, 899, 908, 917, 929
NcoI CCATGG 1 cut(s) 831
NdeII GATC 2 cut(s) 5, 652
NlaIII CATG 8 cut(s) 62, 340, 580, 706, 728, 835, 916, 1222
NlaIV GGNNCC 1 cut(s) 127
NspI RCATGY 1 cut(s) 706
OliI CACNNNNGTG 2 cut(s) 275, 1064
PaeR7I CTCGAG 1 cut(s) 1016
PauI GCGCGC 1 cut(s) 709
PceI AGGCCT 1 cut(s) 246
PciI ACATGT 1 cut(s) 702
PctI GAATGC 1 cut(s) 633
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 337
PkrI GCNGC 5 cut(s) 295, 922, 1041, 1051, 1102
PleI GAGTC 1 cut(s) 963
PpsI GAGTC 1 cut(s) 963
PscI ACATGT 1 cut(s) 702
Psp6I CCWGG 1 cut(s) 906
PspFI CCCAGC 1 cut(s) 923
PspGI CCWGG 1 cut(s) 906
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 1 cut(s) 1041
PsrI GAACNNNNNNTAC 2 cut(s) 734, 766
PstNI CAGNNNCTG 1 cut(s) 263
PteI GCGCGC 1 cut(s) 709
PvuII CAGCTG 1 cut(s) 1103
RsaI GTAC 3 cut(s) 393, 695, 752
RsaNI GTAC 3 cut(s) 392, 694, 751
RseI CAYNNNNRTG 2 cut(s) 275, 1064
SaqAI TTAA 5 cut(s) 153, 225, 801, 959, 1184
SatI GCNGC 5 cut(s) 294, 921, 1040, 1050, 1101
Sau3AI GATC 2 cut(s) 5, 652
Sau96I GGNCC 1 cut(s) 1041
ScaI AGTACT 1 cut(s) 695
SchI GAGTC 1 cut(s) 963
ScrFI CCNGG 1 cut(s) 908
SduI GDGCHC 3 cut(s) 319, 831, 895
SfaNI GCATC 2 cut(s) 207, 988
Sfr274I CTCGAG 1 cut(s) 1016
SlaI CTCGAG 1 cut(s) 1016
SmiMI CAYNNNNRTG 2 cut(s) 275, 1064
SmlI CTYRAG 5 cut(s) 50, 320, 449, 551, 1016
SmoI CTYRAG 5 cut(s) 50, 320, 449, 551, 1016
SpeI ACTAGT 1 cut(s) 20
Sse9I AATT 3 cut(s) 31, 178, 1206
SseBI AGGCCT 1 cut(s) 246
SsiI CCGC 5 cut(s) 14, 294, 360, 1039, 1064
SspMI CTAG 1 cut(s) 21
StuI AGGCCT 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 906
StyI CCWWGG 4 cut(s) 540, 567, 831, 885
TaaI ACNGT 6 cut(s) 95, 391, 590, 755, 853, 955
TaiI ACGT 1 cut(s) 173
TaqI TCGA 3 cut(s) 75, 164, 1017
TasI AATT 3 cut(s) 31, 178, 1206
TatI WGTACW 3 cut(s) 391, 693, 750
TauI GCSGC 2 cut(s) 296, 1042
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 5 cut(s) 153, 225, 801, 959, 1184
Tru9I TTAA 5 cut(s) 153, 225, 801, 959, 1184
TseI GCWGC 3 cut(s) 920, 1049, 1100
TspDTI ATGAA 3 cut(s) 80, 485, 565
Van91I CCANNNNNTGG 1 cut(s) 337
XceI RCATGY 1 cut(s) 706
XcmI CCANNNNNNNNNTGG 1 cut(s) 892
XhoI CTCGAG 1 cut(s) 1016
XmiI GTMKAC 2 cut(s) 780, 1192
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 1 cut(s) 21
ZrmI AGTACT 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.