Rw7G011360

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000101
Physical Location & Seq
Forward (+)
10665147 .. 10667914
2768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G011360.1

Sequence Viewer

Length: 1725 bp
ATGGCGGAAACCACCAAACTGAACTTGGCTGATTCTGCTGCTGCCGATGACCTGGAGAAGCCGCCGGAGGACTTGCGAAAAGTCCTCGCCAAGATGCGTACCCAGGAAGCTCTGATCAGCAGCACAACCAAGATGGTGGAGGGTTTGTTAAGAGACGGCTTCATGAACGTGGCCTTGGAGATTGGAGCCAAGATTCAGGACACCAATGAGGTGCCTCGGGTCGTCACCGACACTGCTGTCATCGAGTACTACGTCAATGCCGCAGGGGACAGGACCAAGGATGCTCTCAGAGTGTTCAAGCACATGTCGGCTTCAGGGGTTGAACCAAATGCCTACACATATGCCGTCATCATCAAGGCTCTTGCTGCTGCTGACCTTAAGAAGAACCCCAATTTCGTTGTTTATGCCAAGAATTACTTTGTGGAGATGCTGGACAGGGGAATGCAGCCAAATGAGGAGACTTATGATGCAGTGTTGGAAGGCATTGGCCGCGGTGACAACAAGGCTGAGGCTGAGGAAGAGTGCAGGGAGTTTGTGGAGAATGTGAAAGAAAAGGGGTTTGTGCTGGTGCTCCAGAAGGAGGCAGAGGAGATGGCTAAACCTCATCCATTGAAGTCTGAGATGGAAATGCTTAAGGAACATGATGCCACCAAAGATTGTGAAGACGAGAATGTGCAAGCAAAATTCAGAGAGATTGGGGAGGACTATGAATCACTGAGCAAATGCGCATTCGACCTTTTTAATGCTTTGGTACGTACAGGGCTCAACGAGGAAGCCAGAGAGCTATTTAAGCCCCTGTTGGAGACAGCCATACTGCCCGATGAGGCCATCTTCACCATTGTCATCCATATCTATGGCGCTGGCAACATCATGGGTCATGCTCTGAAGGCGTACCGGCACATGTTATCTTACGGGATCACCCCCAGCTCTTGCACTTACAATTTACTCATCGCAACACTTTCTCTTGATCCCAATTTCCTTGGGCATGCCAAGGAGTTATTTCTTGAAATGTTGGATAAGGGTATCAAGCCCTTTTCCGGAACCTTTATGGCTGTGTTCAATGGTATTGCTCGCCTGGAGTCATTGGAGAAGGGGAAGGAGTTGCTTGAGCAGATCAAGCCTAAGGGGGTCTTGCCTGTGCTGGACGAAGGCCGTTTCACTGAGGCAATGAAGGCTATGAAGTTGTATGATGATCTCGAGAAGAAGACCACTGACAAAGATGTTCAAGAAGTTATCCGCAATATCTACCTTAATGGCATGGAGGAAGAGTCAAGGGACATGTTCATTGCTATGGTAGAAGATGGCAATGTAGACGAGGCAATGAGGACATTTCAGTCAACAGGTCAGCCGCGCATCAATCCCATGGTCATAGTCCACACTGCTGTTATTGAAGCTTACATCAATGGTGGCAAGACTGAGGGTGCTCTCCAGACCTTCATGGACATGCTAGCAGCTGGACTTGCCCCAATATCCTACACTTACTCTGTTTTGATCAAGGGACTCGCTGCTGACCCCAACTTCTTTGGGGATGCCAAGAAGTATCTGATTGAGATGATGGACAAGGGTATGCATCCAAATGCTGCTACCTACACTGCAGTGTTTGAGGGCTTTGCAAGGGAGGATGACAAGGCAACTGAGGAGGAGGGTAAGAAATTTCTGGAGTATCCGACTGTTCTTCAGCAGTTTTTCGACATTCTACTCAATGATCTGGTGAGGGCCGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

574

Amino Acids

64.13

Weight (kDa)

4.81

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 72 - 122 1.3e-09 PPR repeat family
PPR_2 PF13041 273 - 319 4e-06 PPR repeat family
PPR_2 PF13041 456 - 502 1.6e-08 PPR repeat family
TPR_24 PF23276 457 - 542 7.3e-06 Fungal tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 236, 1333
Acc16I TGCGCA 1 cut(s) 727
AccB1I GGYRCC 1 cut(s) 211
AccI GTMKAC 1 cut(s) 1311
AccII CGCG 2 cut(s) 492, 1351
AccIII TCCGGA 1 cut(s) 1037
AciI CCGC 7 cut(s) 5, 62, 261, 490, 492, 1237, 1349
AclWI GGATC 2 cut(s) 923, 962
AcoI YGGCCR 1 cut(s) 487
AcsI RAATTY 2 cut(s) 683, 1652
AcuI CTGAAG 3 cut(s) 297, 905, 1661
AfaI GTAC 5 cut(s) 100, 248, 753, 757, 893
AfiI CCNNNNNNNGG 2 cut(s) 580, 1037
AflII CTTAAG 2 cut(s) 377, 632
AflIII ACRYGT 3 cut(s) 303, 900, 1278
AgsI TTSAA 7 cut(s) 298, 323, 613, 1007, 1060, 1226, 1391
AjnI CCWGG 3 cut(s) 51, 102, 1074
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AleI CACNNNNGTG 1 cut(s) 1595
AluBI AGCT 5 cut(s) 110, 784, 927, 1394, 1454
AluI AGCT 5 cut(s) 110, 784, 927, 1394, 1454
Alw21I GWGCWC 2 cut(s) 573, 1426
Alw26I GTCTC 3 cut(s) 147, 452, 797
AlwI GGATC 2 cut(s) 923, 962
Ama87I CYCGRG 2 cut(s) 216, 1196
Aor13HI TCCGGA 1 cut(s) 1037
AoxI GGCC 5 cut(s) 171, 487, 825, 1150, 1716
ApeKI GCWGC 9 cut(s) 38, 41, 120, 365, 368, 445, 1451, 1505, 1580
ApoI RAATTY 2 cut(s) 683, 1652
AspLEI GCGC 3 cut(s) 728, 860, 1353
AspS9I GGNCC 2 cut(s) 273, 1716
AsuC2I CCSGG 1 cut(s) 1720
AsuHPI GGTGA 5 cut(s) 217, 506, 826, 910, 1723
AsuNHI GCTAGC 1 cut(s) 1447
AvaI CYCGRG 2 cut(s) 216, 1196
AvaII GGWCC 1 cut(s) 273
AxyI CCTNAGG 1 cut(s) 1122
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 765
BbsI GAAGAC 2 cut(s) 669, 1211
Bbv12I GWGCWC 2 cut(s) 573, 1426
BbvCI CCTCAGC 2 cut(s) 507, 513
BbvI GCAGC 9 cut(s) 25, 28, 132, 352, 355, 457, 1463, 1492, 1567
BccI CCATC 6 cut(s) 127, 586, 616, 836, 1295, 1549
BceAI ACGGC 3 cut(s) 172, 329, 1137
BciT130I CCWGG 3 cut(s) 53, 104, 1076
BciVI GTATCC 1 cut(s) 1674
BclI TGATCA 2 cut(s) 114, 1491
BcnI CCSGG 1 cut(s) 1720
BcoDI GTCTC 3 cut(s) 147, 452, 797
BfaI CTAG 1 cut(s) 1448
BfmI CTRYAG 1 cut(s) 1593
BfoI RGCGCY 1 cut(s) 861
BfrI CTTAAG 2 cut(s) 377, 632
BfuI GTATCC 1 cut(s) 1674
BmcAI AGTACT 1 cut(s) 248
Bme1390I CCNGG 4 cut(s) 53, 104, 1076, 1720
Bme18I GGWCC 1 cut(s) 273
BmeT110I CYCGRG 2 cut(s) 216, 1196
BmgT120I GGNCC 2 cut(s) 273, 1716
BmiI GGNNCC 3 cut(s) 187, 213, 1042
BmrFI CCNGG 4 cut(s) 53, 104, 1076, 1720
BmsI GCATC 8 cut(s) 84, 271, 417, 457, 634, 1362, 1519, 1579
BmtI GCTAGC 1 cut(s) 1451
BpiI GAAGAC 2 cut(s) 669, 1211
BpmI CTGGAG 5 cut(s) 74, 557, 1097, 1412, 1679
Bpu10I CCTNAGC 2 cut(s) 507, 513
BpuEI CTTGAG 1 cut(s) 1127
BpuMI CCSGG 1 cut(s) 1720
BsaAI YACGTR 1 cut(s) 755
BsaJI CCNNGG 8 cut(s) 102, 174, 215, 276, 490, 979, 990, 1362
BsaWI WCCGGW 1 cut(s) 1037
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 1253, 1283
Bsc4I CCNNNNNNNGG 2 cut(s) 580, 1037
Bse118I RCCGGY 1 cut(s) 894
Bse21I CCTNAGG 1 cut(s) 1122
Bse3DI GCAATG 4 cut(s) 1173, 1284, 1312, 1326
BseAI TCCGGA 1 cut(s) 1037
BseBI CCWGG 3 cut(s) 53, 104, 1076
BseDI CCNNGG 8 cut(s) 102, 174, 215, 276, 490, 979, 990, 1362
BseGI GGATG 6 cut(s) 286, 604, 843, 1534, 1570, 1627
BseLI CCNNNNNNNGG 2 cut(s) 580, 1037
BseMI GCAATG 4 cut(s) 1173, 1284, 1312, 1326
BseMII CTCAG 8 cut(s) 301, 498, 504, 609, 707, 1152, 1407, 1626
BseRI GAGGAG 4 cut(s) 470, 602, 1652, 1655
BseXI GCAGC 9 cut(s) 25, 28, 132, 352, 355, 457, 1463, 1492, 1567
BseYI CCCAGC 1 cut(s) 923
BsgI GTGCAG 1 cut(s) 544
Bsh1236I CGCG 2 cut(s) 492, 1351
BshFI GGCC 5 cut(s) 173, 489, 827, 1152, 1718
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 2 cut(s) 573, 1426
BsiHKCI CYCGRG 2 cut(s) 216, 1196
BsiSI CCGG 4 cut(s) 65, 895, 1038, 1719
BslFI GGGAC 3 cut(s) 281, 1289, 1512
BslI CCNNNNNNNGG 2 cut(s) 580, 1037
BsmAI GTCTC 3 cut(s) 147, 452, 797
BsmBI CGTCTC 1 cut(s) 147
BsmFI GGGAC 3 cut(s) 281, 1289, 1512
BsmI GAATGC 2 cut(s) 447, 728
BsnI GGCC 5 cut(s) 173, 489, 827, 1152, 1718
BsoBI CYCGRG 2 cut(s) 216, 1196
Bsp1286I GDGCHC 3 cut(s) 573, 765, 1426
Bsp13I TCCGGA 1 cut(s) 1037
Bsp143I GATC 7 cut(s) 114, 915, 967, 1113, 1192, 1491, 1705
Bsp19I CCATGG 1 cut(s) 1362
BspACI CCGC 7 cut(s) 5, 62, 261, 490, 492, 1237, 1349
BspANI GGCC 5 cut(s) 173, 489, 827, 1152, 1718
BspCNI CTCAG 8 cut(s) 300, 499, 505, 610, 708, 1153, 1408, 1627
BspEI TCCGGA 1 cut(s) 1037
BspFNI CGCG 2 cut(s) 492, 1351
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 3 cut(s) 187, 213, 1042
BspMAI CTGCAG 1 cut(s) 1597
BspOI GCTAGC 1 cut(s) 1451
BspPI GGATC 2 cut(s) 923, 962
BspT107I GGYRCC 1 cut(s) 211
BspTI CTTAAG 2 cut(s) 377, 632
BsrDI GCAATG 4 cut(s) 1173, 1284, 1312, 1326
BsrFI RCCGGY 1 cut(s) 894
BssAI RCCGGY 1 cut(s) 894
BssECI CCNNGG 8 cut(s) 102, 174, 215, 276, 490, 979, 990, 1362
BssMI GATC 7 cut(s) 114, 915, 967, 1113, 1192, 1491, 1705
BssT1I CCWWGG 5 cut(s) 174, 276, 979, 990, 1362
Bst2UI CCWGG 3 cut(s) 53, 104, 1076
Bst4CI ACNGT 1 cut(s) 1672
Bst6I CTCTTC 2 cut(s) 513, 1260
BstAFI CTTAAG 2 cut(s) 377, 632
BstBAI YACGTR 1 cut(s) 755
BstC8I GCNNGC 5 cut(s) 678, 862, 987, 1072, 1449
BstDEI CTNAG 9 cut(s) 287, 507, 513, 618, 716, 1122, 1161, 1416, 1635
BstDSI CCRYGG 2 cut(s) 490, 1362
BstF5I GGATG 6 cut(s) 286, 604, 843, 1534, 1570, 1627
BstFNI CGCG 2 cut(s) 492, 1351
BstH2I RGCGCY 1 cut(s) 861
BstHHI GCGC 3 cut(s) 728, 860, 1353
BstKTI GATC 7 cut(s) 117, 918, 970, 1116, 1195, 1494, 1708
BstMAI GTCTC 3 cut(s) 147, 452, 797
BstMBI GATC 7 cut(s) 114, 915, 967, 1113, 1192, 1491, 1705
BstMWI GCNNNNNNNGC 8 cut(s) 35, 365, 489, 790, 887, 1117, 1172, 1460
BstNI CCWGG 3 cut(s) 53, 104, 1076
BstNSI RCATGY 5 cut(s) 307, 904, 989, 1282, 1447
BstSCI CCNGG 4 cut(s) 51, 102, 1074, 1718
BstSFI CTRYAG 1 cut(s) 1593
BstSNI TACGTA 1 cut(s) 755
BstUI CGCG 2 cut(s) 492, 1351
BstV1I GCAGC 9 cut(s) 25, 28, 132, 352, 355, 457, 1463, 1492, 1567
BstV2I GAAGAC 2 cut(s) 669, 1211
BstXI CCANNNNNNTGG 2 cut(s) 136, 854
Bsu36I CCTNAGG 1 cut(s) 1122
BsuI GTATCC 1 cut(s) 1674
BsuRI GGCC 5 cut(s) 173, 489, 827, 1152, 1718
BtgI CCRYGG 2 cut(s) 490, 1362
BtgZI GCGATG 1 cut(s) 934
BtsCI GGATG 6 cut(s) 286, 604, 843, 1534, 1570, 1627
BtsI GCAGTG 5 cut(s) 231, 477, 1377, 1590, 1602
BtsIMutI CAGTG 8 cut(s) 231, 477, 713, 1158, 1209, 1377, 1590, 1602
Cac8I GCNNGC 5 cut(s) 678, 862, 987, 1072, 1449
CciI TCATGA 1 cut(s) 162
CfoI GCGC 3 cut(s) 728, 860, 1353
Cfr10I RCCGGY 1 cut(s) 894
Cfr13I GGNCC 2 cut(s) 273, 1716
Cfr42I CCGCGG 1 cut(s) 493
Csp6I GTAC 5 cut(s) 99, 247, 752, 756, 892
CviQI GTAC 5 cut(s) 99, 247, 752, 756, 892
DdeI CTNAG 9 cut(s) 287, 507, 513, 618, 716, 1122, 1161, 1416, 1635
DpnI GATC 7 cut(s) 116, 917, 969, 1115, 1194, 1493, 1707
DpnII GATC 7 cut(s) 114, 915, 967, 1113, 1192, 1491, 1705
DrdI GACNNNNNNGTC 2 cut(s) 236, 1333
DseDI GACNNNNNNGTC 2 cut(s) 236, 1333
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 2 cut(s) 513, 1260
EarI CTCTTC 2 cut(s) 513, 1260
EciI GGCGGA 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 755
Eco130I CCWWGG 5 cut(s) 174, 276, 979, 990, 1362
Eco24I GRGCYC 1 cut(s) 765
Eco47I GGWCC 1 cut(s) 273
Eco57I CTGAAG 3 cut(s) 297, 905, 1661
Eco81I CCTNAGG 1 cut(s) 1122
Eco88I CYCGRG 2 cut(s) 216, 1196
EcoRII CCWGG 3 cut(s) 51, 102, 1074
EcoT14I CCWWGG 5 cut(s) 174, 276, 979, 990, 1362
EcoT22I ATGCAT 1 cut(s) 1572
EcoT38I GRGCYC 1 cut(s) 765
ErhI CCWWGG 5 cut(s) 174, 276, 979, 990, 1362
Esp3I CGTCTC 1 cut(s) 147
FalI AAGNNNNNCTT 4 cut(s) 401, 433, 1115, 1147
FaqI GGGAC 3 cut(s) 281, 1289, 1512
FauNDI CATATG 1 cut(s) 340
FbaI TGATCA 2 cut(s) 114, 1491
FblI GTMKAC 1 cut(s) 1311
FokI GGATG 6 cut(s) 293, 591, 830, 1541, 1557, 1634
FriOI GRGCYC 1 cut(s) 765
FspAI RTGCGCAY 1 cut(s) 727
FspBI CTAG 1 cut(s) 1448
FspI TGCGCA 1 cut(s) 727
GlaI GCGC 3 cut(s) 727, 859, 1352
GsaI CCCAGC 1 cut(s) 927
GsuI CTGGAG 5 cut(s) 74, 557, 1097, 1412, 1679
HaeII RGCGCY 1 cut(s) 861
HaeIII GGCC 5 cut(s) 173, 489, 827, 1152, 1718
HapII CCGG 4 cut(s) 65, 895, 1038, 1719
HhaI GCGC 3 cut(s) 728, 860, 1353
Hin6I GCGC 3 cut(s) 726, 858, 1351
HinP1I GCGC 3 cut(s) 726, 858, 1351
HincII GTYRAC 1 cut(s) 1338
HindII GTYRAC 1 cut(s) 1338
HindIII AAGCTT 1 cut(s) 1392
HinfI GANTC 6 cut(s) 32, 193, 710, 1079, 1268, 1500
HpaII CCGG 4 cut(s) 65, 895, 1038, 1719
HphI GGTGA 5 cut(s) 217, 506, 826, 910, 1723
Hpy166II GTNNAC 3 cut(s) 1312, 1338, 1375
Hpy188I TCNGA 7 cut(s) 114, 290, 619, 689, 885, 1545, 1668
Hpy8I GTNNAC 3 cut(s) 1312, 1338, 1375
HpyAV CCTTC 8 cut(s) 473, 571, 880, 1084, 1090, 1142, 1165, 1444
HpyCH4III ACNGT 1 cut(s) 1672
HpyCH4IV ACGT 3 cut(s) 168, 252, 754
HpyCH4V TGCA 8 cut(s) 445, 470, 525, 676, 933, 1570, 1595, 1613
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 365, 489, 790, 887, 1117, 1172, 1460
HpyF3I CTNAG 9 cut(s) 287, 507, 513, 618, 716, 1122, 1161, 1416, 1635
HpySE526I ACGT 3 cut(s) 168, 252, 754
HspAI GCGC 3 cut(s) 726, 858, 1351
Kpn2I TCCGGA 1 cut(s) 1037
Ksp22I TGATCA 2 cut(s) 114, 1491
KspI CCGCGG 1 cut(s) 493
Kzo9I GATC 7 cut(s) 114, 915, 967, 1113, 1192, 1491, 1705
LmnI GCTCC 2 cut(s) 185, 576
Lsp1109I GCAGC 9 cut(s) 25, 28, 132, 352, 355, 457, 1463, 1492, 1567
LweI GCATC 8 cut(s) 84, 271, 417, 457, 634, 1362, 1519, 1579
MaeI CTAG 1 cut(s) 1448
MaeII ACGT 3 cut(s) 168, 252, 754
MaeIII GTNAC 2 cut(s) 223, 494
MalI GATC 7 cut(s) 116, 917, 969, 1115, 1194, 1493, 1707
MboI GATC 7 cut(s) 114, 915, 967, 1113, 1192, 1491, 1705
MboII GAAGA 9 cut(s) 394, 530, 674, 823, 1213, 1216, 1277, 1310, 1667
MhlI GDGCHC 3 cut(s) 573, 765, 1426
MluCI AATT 6 cut(s) 391, 412, 683, 940, 973, 1652
MlyI GAGTC 3 cut(s) 1088, 1277, 1494
MmeI TCCRAC 4 cut(s) 456, 780, 993, 1691
Mph1103I ATGCAT 1 cut(s) 1572
MroI TCCGGA 1 cut(s) 1037
MseI TTAA 6 cut(s) 149, 378, 633, 741, 789, 1251
MslI CAYNNNNRTG 6 cut(s) 167, 852, 1289, 1442, 1575, 1595
MspA1I CMGCKG 2 cut(s) 492, 1454
MspCI CTTAAG 2 cut(s) 377, 632
MspI CCGG 4 cut(s) 65, 895, 1038, 1719
MspR9I CCNGG 4 cut(s) 53, 104, 1076, 1720
Mva1269I GAATGC 2 cut(s) 447, 728
MvaI CCWGG 3 cut(s) 53, 104, 1076
MvnI CGCG 2 cut(s) 492, 1351
MwoI GCNNNNNNNGC 8 cut(s) 35, 365, 489, 790, 887, 1117, 1172, 1460
NciI CCSGG 1 cut(s) 1720
NcoI CCATGG 1 cut(s) 1362
NdeI CATATG 1 cut(s) 340
NdeII GATC 7 cut(s) 114, 915, 967, 1113, 1192, 1491, 1705
NheI GCTAGC 1 cut(s) 1447
NlaIV GGNNCC 3 cut(s) 187, 213, 1042
NmuCI GTSAC 2 cut(s) 223, 494
NsbI TGCGCA 1 cut(s) 727
NsiI ATGCAT 1 cut(s) 1572
NspI RCATGY 5 cut(s) 307, 904, 989, 1282, 1447
OliI CACNNNNGTG 1 cut(s) 1595
PaeI GCATGC 1 cut(s) 989
PaeR7I CTCGAG 1 cut(s) 1196
PagI TCATGA 1 cut(s) 162
PciI ACATGT 3 cut(s) 303, 900, 1278
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 2 cut(s) 447, 728
PfeI GAWTC 3 cut(s) 32, 193, 710
PleI GAGTC 3 cut(s) 1087, 1276, 1494
PpsI GAGTC 3 cut(s) 1087, 1276, 1494
Ppu21I YACGTR 1 cut(s) 755
PscI ACATGT 3 cut(s) 303, 900, 1278
Psp6I CCWGG 3 cut(s) 51, 102, 1074
PspFI CCCAGC 1 cut(s) 923
PspGI CCWGG 3 cut(s) 51, 102, 1074
PspN4I GGNNCC 3 cut(s) 187, 213, 1042
PspPI GGNCC 2 cut(s) 273, 1716
PstI CTGCAG 1 cut(s) 1597
PvuII CAGCTG 1 cut(s) 1454
RsaI GTAC 5 cut(s) 100, 248, 753, 757, 893
RsaNI GTAC 5 cut(s) 99, 247, 752, 756, 892
RseI CAYNNNNRTG 6 cut(s) 167, 852, 1289, 1442, 1575, 1595
SacII CCGCGG 1 cut(s) 493
SaqAI TTAA 6 cut(s) 149, 378, 633, 741, 789, 1251
Sau3AI GATC 7 cut(s) 114, 915, 967, 1113, 1192, 1491, 1705
Sau96I GGNCC 2 cut(s) 273, 1716
ScaI AGTACT 1 cut(s) 248
SchI GAGTC 3 cut(s) 1088, 1277, 1494
ScrFI CCNGG 4 cut(s) 53, 104, 1076, 1720
SduI GDGCHC 3 cut(s) 573, 765, 1426
SfaNI GCATC 8 cut(s) 84, 271, 417, 457, 634, 1362, 1519, 1579
SfcI CTRYAG 1 cut(s) 1593
Sfr274I CTCGAG 1 cut(s) 1196
Sfr303I CCGCGG 1 cut(s) 493
SgrBI CCGCGG 1 cut(s) 493
SinI GGWCC 1 cut(s) 273
SlaI CTCGAG 1 cut(s) 1196
SmiMI CAYNNNNRTG 6 cut(s) 167, 852, 1289, 1442, 1575, 1595
SmlI CTYRAG 4 cut(s) 377, 632, 1106, 1196
SmoI CTYRAG 4 cut(s) 377, 632, 1106, 1196
SnaBI TACGTA 1 cut(s) 755
SphI GCATGC 1 cut(s) 989
Sse9I AATT 6 cut(s) 391, 412, 683, 940, 973, 1652
SsiI CCGC 7 cut(s) 5, 62, 261, 490, 492, 1237, 1349
SspMI CTAG 1 cut(s) 1448
StyD4I CCNGG 4 cut(s) 51, 102, 1074, 1718
StyI CCWWGG 5 cut(s) 174, 276, 979, 990, 1362
TaaI ACNGT 1 cut(s) 1672
TaiI ACGT 3 cut(s) 171, 255, 757
TaqI TCGA 4 cut(s) 243, 732, 1197, 1689
TasI AATT 6 cut(s) 391, 412, 683, 940, 973, 1652
TatI WGTACW 1 cut(s) 246
TauI GCSGC 4 cut(s) 64, 263, 492, 1351
TfiI GAWTC 3 cut(s) 32, 193, 710
Tru1I TTAA 6 cut(s) 149, 378, 633, 741, 789, 1251
Tru9I TTAA 6 cut(s) 149, 378, 633, 741, 789, 1251
TscAI CASTG 8 cut(s) 238, 477, 720, 1165, 1216, 1384, 1597, 1602
TseFI GTSAC 2 cut(s) 223, 494
TseI GCWGC 9 cut(s) 38, 41, 120, 365, 368, 445, 1451, 1505, 1580
Tsp45I GTSAC 2 cut(s) 223, 494
TspDTI ATGAA 7 cut(s) 151, 179, 723, 1184, 1193, 1273, 1426
TspRI CASTG 8 cut(s) 238, 477, 720, 1165, 1216, 1384, 1597, 1602
Vha464I CTTAAG 2 cut(s) 377, 632
VpaK11BI GGWCC 1 cut(s) 273
XapI RAATTY 2 cut(s) 683, 1652
XceI RCATGY 5 cut(s) 307, 904, 989, 1282, 1447
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XhoI CTCGAG 1 cut(s) 1196
XmiI GTMKAC 1 cut(s) 1311
XspI CTAG 1 cut(s) 1448
ZrmI AGTACT 1 cut(s) 248
Zsp2I ATGCAT 1 cut(s) 1572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.