FvH4_5g35050

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000101
Physical Location & Seq
Forward (+)
25636028 .. 25637923
1896 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g35050.t2

Sequence Viewer

Length: 1080 bp
ATGTTCAACTTTATGGCAGATATCAACCACACTGACAGTGCTAGAGAGATGTTTAAGCCTTTATCTGACTTAGGCATTCTGTCTGAAGTGGCTGTCTTCACCATTGTGATCACTCTCTACTCCGGTTCGCGAAAGGCCGAGAGTGCTCTCAAGGTCTACCACCACATGATAGCCTCTGGTGTCAAACCTGTCTCCTACACTTACACTCAACTAACCTGTGTACTTTCAACAGATTTTTCCAAAGCAAAGTACCTTAGGTATGCCAAGAAGTTTTTTCTAGAAGCGTTGGATAAGGGGATGAAGCTCAAGCGTACACCCTTCTGGAATGTTATGAAGGCCATTGCCTATCGAGAGCCACTGGAGAAGTTCAAGGAGTTCCTAGAGCAGCTAAAAGCCAAGGGGTTCATTCTTCACGACAATGGTTTTTACTACAAAGAAGCCTACCTCGCCGAAGCAAGGGAAACTCTGAAGATGTATGCTCATCTTGTACACAATCACACCGTTGACGTGGATGTGAGAAGTTACTTCTACATGAAGAGCGCCTTCCCTGACCACATCCAGAAACTGTCAAACAAGATGTACACTGCTTTGATAGTTGATGGAAATTTTCACAAGGCCATAGAGTTCAGTAAGGAAATTGAGGAGACGCATATAGAGCCCATGGTCGTAATCCACACTTCCGTTATTAAAGCCTACCTCAAGTTCAGCAAGACCAAGGGTGCTCTGGAGGCATACCTGGCCATGTTAGCTGCGGGGGTTGCTCCCAACTCCGTCACTTACACCGTTTTGATCAAGGGACTCAGTGCGAACCCCGATTTCATTGGAGATGCCAAGAAGTATTTGCTTGAGATGATGGACAAGGGAAAGCGGCCTAATGCTGCTACAATCACTGCAGTGATAGAAGGCTTTGCAAAGCAGGAGGACAAGGCAGCTGAGGAGGAGGGAAAAGAGTTTGTGCGGGTAATGATGGATAAGGGGTTTGTGCCTAATGTGAAGGCAATGATGGAGGTTTTAAGGGGTAGACCAACAGCGGTAATTAGAAGGGCCATGAGTGTTGTCCTTTCCACCTTGAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

360

Amino Acids

40.76

Weight (kDa)

9.3

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 122 - 168 5.5e-10 PPR repeat family
TPR_24 PF23276 124 - 210 3.8e-08 Fungal tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 156, 1021
AccII CGCG 1 cut(s) 130
AciI CCGC 4 cut(s) 752, 868, 958, 1031
AcoI YGGCCR 1 cut(s) 738
AcsI RAATTY 1 cut(s) 604
AcuI CTGAAG 2 cut(s) 105, 488
AfaI GTAC 5 cut(s) 222, 251, 313, 489, 581
AfiI CCNNNNNNNGG 1 cut(s) 456
AgsI TTSAA 4 cut(s) 7, 228, 370, 1072
AjiI CACGTC 1 cut(s) 508
AjnI CCWGG 1 cut(s) 735
AleI CACNNNNGTG 2 cut(s) 104, 893
AluBI AGCT 4 cut(s) 304, 388, 749, 932
AluI AGCT 4 cut(s) 304, 388, 749, 932
Alw21I GWGCWC 2 cut(s) 148, 724
Alw26I GTCTC 2 cut(s) 196, 638
AlwNI CAGNNNCTG 1 cut(s) 565
AoxI GGCC 6 cut(s) 135, 336, 615, 738, 869, 1044
ApeKI GCWGC 4 cut(s) 385, 749, 878, 929
ApoI RAATTY 1 cut(s) 604
AspLEI GCGC 1 cut(s) 542
AspS9I GGNCC 1 cut(s) 1044
AsuHPI GGTGA 1 cut(s) 91
AxyI CCTNAGG 1 cut(s) 254
BalI TGGCCA 1 cut(s) 740
BanII GRGCYC 1 cut(s) 660
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 2 cut(s) 148, 724
BbvCI CCTCAGC 1 cut(s) 933
BbvI GCAGC 4 cut(s) 397, 736, 865, 941
BccI CCATC 4 cut(s) 593, 847, 961, 997
BciT130I CCWGG 1 cut(s) 737
BclI TGATCA 2 cut(s) 108, 789
BcoDI GTCTC 2 cut(s) 196, 638
BfaI CTAG 3 cut(s) 42, 278, 380
BfmI CTRYAG 1 cut(s) 891
BfoI RGCGCY 1 cut(s) 543
BisI GCNGC 5 cut(s) 386, 750, 869, 879, 930
BlsI GCNGC 5 cut(s) 387, 751, 870, 880, 931
Bme1390I CCNGG 1 cut(s) 737
BmgBI CACGTC 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 1044
BmrFI CCNGG 1 cut(s) 737
BmsI GCATC 1 cut(s) 817
BpiI GAAGAC 1 cut(s) 88
BpmI CTGGAG 2 cut(s) 380, 746
Bpu10I CCTNAGC 1 cut(s) 933
BpuEI CTTGAG 4 cut(s) 134, 290, 683, 866
BsaJI CCNNGG 3 cut(s) 396, 660, 714
BsaWI WCCGGW 1 cut(s) 122
Bsc4I CCNNNNNNNGG 1 cut(s) 456
Bse1I ACTGG 1 cut(s) 363
Bse21I CCTNAGG 1 cut(s) 254
Bse3DI GCAATG 2 cut(s) 339, 1005
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 3 cut(s) 396, 660, 714
BseGI GGATG 3 cut(s) 303, 517, 555
BseLI CCNNNNNNNGG 1 cut(s) 456
BseMI GCAATG 2 cut(s) 339, 1005
BseMII CTCAG 2 cut(s) 814, 924
BseNI ACTGG 1 cut(s) 363
BseRI GAGGAG 3 cut(s) 656, 950, 953
BseXI GCAGC 4 cut(s) 397, 736, 865, 941
Bsh1236I CGCG 1 cut(s) 130
BshFI GGCC 6 cut(s) 137, 338, 617, 740, 871, 1046
BsiHKAI GWGCWC 2 cut(s) 148, 724
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 810
BslI CCNNNNNNNGG 1 cut(s) 456
BsmAI GTCTC 2 cut(s) 196, 638
BsmBI CGTCTC 1 cut(s) 638
BsmFI GGGAC 1 cut(s) 810
BsmI GAATGC 1 cut(s) 75
BsnI GGCC 6 cut(s) 137, 338, 617, 740, 871, 1046
Bsp1286I GDGCHC 3 cut(s) 148, 660, 724
Bsp1407I TGTACA 2 cut(s) 487, 579
Bsp143I GATC 2 cut(s) 108, 789
Bsp19I CCATGG 1 cut(s) 660
Bsp68I TCGCGA 1 cut(s) 130
BspACI CCGC 4 cut(s) 752, 868, 958, 1031
BspANI GGCC 6 cut(s) 137, 338, 617, 740, 871, 1046
BspCNI CTCAG 2 cut(s) 813, 925
BspFNI CGCG 1 cut(s) 130
BspMAI CTGCAG 1 cut(s) 895
BspQI GCTCTTC 1 cut(s) 530
BsrDI GCAATG 2 cut(s) 339, 1005
BsrGI TGTACA 2 cut(s) 487, 579
BsrI ACTGG 1 cut(s) 363
BssECI CCNNGG 3 cut(s) 396, 660, 714
BssMI GATC 2 cut(s) 108, 789
BssT1I CCWWGG 3 cut(s) 396, 660, 714
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 4 cut(s) 38, 502, 567, 784
Bst6I CTCTTC 1 cut(s) 530
BstAUI TGTACA 2 cut(s) 487, 579
BstDEI CTNAG 4 cut(s) 70, 254, 800, 933
BstDSI CCRYGG 1 cut(s) 660
BstF5I GGATG 3 cut(s) 303, 517, 555
BstFNI CGCG 1 cut(s) 130
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 2 cut(s) 111, 792
BstMAI GTCTC 2 cut(s) 196, 638
BstMBI GATC 2 cut(s) 108, 789
BstMWI GCNNNNNNNGC 7 cut(s) 143, 446, 655, 728, 737, 746, 758
BstNI CCWGG 1 cut(s) 737
BstSCI CCNGG 1 cut(s) 735
BstSFI CTRYAG 1 cut(s) 891
BstUI CGCG 1 cut(s) 130
BstV1I GCAGC 4 cut(s) 397, 736, 865, 941
BstV2I GAAGAC 1 cut(s) 88
Bsu36I CCTNAGG 1 cut(s) 254
BsuRI GGCC 6 cut(s) 137, 338, 617, 740, 871, 1046
BtgI CCRYGG 1 cut(s) 660
BtrI CACGTC 1 cut(s) 508
BtsCI GGATG 3 cut(s) 303, 517, 555
BtsI GCAGTG 3 cut(s) 582, 888, 900
BtsIMutI CAGTG 7 cut(s) 30, 43, 356, 582, 808, 888, 900
BtuMI TCGCGA 1 cut(s) 130
CaiI CAGNNNCTG 1 cut(s) 565
CfoI GCGC 1 cut(s) 542
Cfr13I GGNCC 1 cut(s) 1044
CseI GACGC 1 cut(s) 655
Csp6I GTAC 5 cut(s) 221, 250, 312, 488, 580
CviAII CATG 5 cut(s) 166, 532, 661, 742, 1048
CviQI GTAC 5 cut(s) 221, 250, 312, 488, 580
DdeI CTNAG 4 cut(s) 70, 254, 800, 933
DpnI GATC 2 cut(s) 110, 791
DpnII GATC 2 cut(s) 108, 789
EaeI YGGCCR 1 cut(s) 738
Eam1104I CTCTTC 1 cut(s) 530
EarI CTCTTC 1 cut(s) 530
Eco130I CCWWGG 3 cut(s) 396, 660, 714
Eco24I GRGCYC 1 cut(s) 660
Eco32I GATATC 1 cut(s) 22
Eco57I CTGAAG 2 cut(s) 105, 488
Eco81I CCTNAGG 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 735
EcoRV GATATC 1 cut(s) 22
EcoT14I CCWWGG 3 cut(s) 396, 660, 714
EcoT38I GRGCYC 1 cut(s) 660
ErhI CCWWGG 3 cut(s) 396, 660, 714
Esp3I CGTCTC 1 cut(s) 638
FaeI CATG 5 cut(s) 169, 535, 664, 745, 1051
FalI AAGNNNNNCTT 2 cut(s) 527, 559
FaqI GGGAC 1 cut(s) 810
FatI CATG 5 cut(s) 165, 531, 660, 741, 1047
FauI CCCGC 2 cut(s) 745, 951
FbaI TGATCA 2 cut(s) 108, 789
FblI GTMKAC 2 cut(s) 156, 1021
Fnu4HI GCNGC 5 cut(s) 386, 750, 869, 879, 930
FokI GGATG 3 cut(s) 310, 524, 542
FriOI GRGCYC 1 cut(s) 660
Fsp4HI GCNGC 5 cut(s) 386, 750, 869, 879, 930
FspBI CTAG 3 cut(s) 42, 278, 380
GlaI GCGC 1 cut(s) 541
GluI GCNGC 5 cut(s) 386, 750, 869, 879, 930
GsuI CTGGAG 2 cut(s) 380, 746
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 6 cut(s) 137, 338, 617, 740, 871, 1046
HapII CCGG 1 cut(s) 123
HgaI GACGC 1 cut(s) 655
HhaI GCGC 1 cut(s) 542
Hin1II CATG 5 cut(s) 169, 535, 664, 745, 1051
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HinfI GANTC 1 cut(s) 798
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 7 cut(s) 157, 221, 314, 490, 505, 582, 1022
Hpy188I TCNGA 3 cut(s) 67, 85, 468
Hpy188III TCNNGA 7 cut(s) 129, 278, 322, 350, 413, 559, 725
Hpy8I GTNNAC 7 cut(s) 157, 221, 314, 490, 505, 582, 1022
HpyAV CCTTC 6 cut(s) 328, 328, 553, 896, 988, 1035
HpyCH4III ACNGT 4 cut(s) 38, 502, 567, 784
HpyCH4IV ACGT 1 cut(s) 507
HpyCH4V TGCA 2 cut(s) 893, 911
HpyF10VI GCNNNNNNNGC 7 cut(s) 143, 446, 655, 728, 737, 746, 758
HpyF3I CTNAG 4 cut(s) 70, 254, 800, 933
HpySE526I ACGT 1 cut(s) 507
Hsp92II CATG 5 cut(s) 169, 535, 664, 745, 1051
HspAI GCGC 1 cut(s) 540
Ksp22I TGATCA 2 cut(s) 108, 789
Kzo9I GATC 2 cut(s) 108, 789
LguI GCTCTTC 1 cut(s) 530
LmnI GCTCC 1 cut(s) 766
Lsp1109I GCAGC 4 cut(s) 397, 736, 865, 941
LweI GCATC 1 cut(s) 817
MaeI CTAG 3 cut(s) 42, 278, 380
MaeII ACGT 1 cut(s) 507
MaeIII GTNAC 2 cut(s) 521, 772
MalI GATC 2 cut(s) 110, 791
MboI GATC 2 cut(s) 108, 789
MboII GAAGA 4 cut(s) 88, 401, 481, 547
MhlI GDGCHC 3 cut(s) 148, 660, 724
MlsI TGGCCA 1 cut(s) 740
MluCI AATT 3 cut(s) 604, 636, 1035
MluNI TGGCCA 1 cut(s) 740
MlyI GAGTC 1 cut(s) 792
MmeI TCCRAC 1 cut(s) 267
Mox20I TGGCCA 1 cut(s) 740
MscI TGGCCA 1 cut(s) 740
MseI TTAA 3 cut(s) 54, 687, 1013
MslI CAYNNNNRTG 3 cut(s) 104, 417, 893
Msp20I TGGCCA 1 cut(s) 740
MspA1I CMGCKG 2 cut(s) 932, 1031
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 737
Mva1269I GAATGC 1 cut(s) 75
MvaI CCWGG 1 cut(s) 737
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 7 cut(s) 143, 446, 655, 728, 737, 746, 758
NcoI CCATGG 1 cut(s) 660
NdeII GATC 2 cut(s) 108, 789
NlaIII CATG 5 cut(s) 169, 535, 664, 745, 1051
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 772
NruI TCGCGA 1 cut(s) 130
OliI CACNNNNGTG 2 cut(s) 104, 893
PciSI GCTCTTC 1 cut(s) 530
PctI GAATGC 1 cut(s) 75
PkrI GCNGC 5 cut(s) 387, 751, 870, 880, 931
PleI GAGTC 1 cut(s) 792
PpsI GAGTC 1 cut(s) 792
Psp6I CCWGG 1 cut(s) 735
PspGI CCWGG 1 cut(s) 735
PspPI GGNCC 1 cut(s) 1044
PstI CTGCAG 1 cut(s) 895
PstNI CAGNNNCTG 1 cut(s) 565
PvuII CAGCTG 1 cut(s) 932
RruI TCGCGA 1 cut(s) 130
RsaI GTAC 5 cut(s) 222, 251, 313, 489, 581
RsaNI GTAC 5 cut(s) 221, 250, 312, 488, 580
RseI CAYNNNNRTG 3 cut(s) 104, 417, 893
SapI GCTCTTC 1 cut(s) 530
SaqAI TTAA 3 cut(s) 54, 687, 1013
SatI GCNGC 5 cut(s) 386, 750, 869, 879, 930
Sau3AI GATC 2 cut(s) 108, 789
Sau96I GGNCC 1 cut(s) 1044
SchI GAGTC 1 cut(s) 792
ScrFI CCNGG 1 cut(s) 737
SduI GDGCHC 3 cut(s) 148, 660, 724
SfaNI GCATC 1 cut(s) 817
SfcI CTRYAG 1 cut(s) 891
SmiMI CAYNNNNRTG 3 cut(s) 104, 417, 893
SmlI CTYRAG 4 cut(s) 149, 305, 698, 845
SmoI CTYRAG 4 cut(s) 149, 305, 698, 845
Sse9I AATT 3 cut(s) 604, 636, 1035
SsiI CCGC 4 cut(s) 752, 868, 958, 1031
SspMI CTAG 3 cut(s) 42, 278, 380
StyD4I CCNGG 1 cut(s) 735
StyI CCWWGG 3 cut(s) 396, 660, 714
TaaI ACNGT 4 cut(s) 38, 502, 567, 784
TaiI ACGT 1 cut(s) 510
TaqI TCGA 1 cut(s) 349
TasI AATT 3 cut(s) 604, 636, 1035
TatI WGTACW 3 cut(s) 220, 487, 579
TauI GCSGC 1 cut(s) 871
Tru1I TTAA 3 cut(s) 54, 687, 1013
Tru9I TTAA 3 cut(s) 54, 687, 1013
TscAI CASTG 7 cut(s) 37, 43, 363, 589, 808, 895, 900
TseFI GTSAC 1 cut(s) 772
TseI GCWGC 4 cut(s) 385, 749, 878, 929
Tsp45I GTSAC 1 cut(s) 772
TspDTI ATGAA 5 cut(s) 314, 347, 394, 548, 808
TspGWI ACGGA 2 cut(s) 670, 760
TspRI CASTG 7 cut(s) 37, 43, 363, 589, 808, 895, 900
XapI RAATTY 1 cut(s) 604
XbaI TCTAGA 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 721
XmiI GTMKAC 2 cut(s) 156, 1021
XspI CTAG 3 cut(s) 42, 278, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.