FvH4_4g16590

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000101
Physical Location & Seq
Forward (+)
20485432 .. 20487504
2073 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16590.t3

Sequence Viewer

Length: 744 bp
ATGTTGTTTTTAGAAGGGTGTTTTGCAGACATTGCCTGGCTGGAGACGGTGGAGGAGGTCAGGGGGTTCCTTGGGTTTGTTCCTGATGACGACTGTTTTGATTTTGATAAAGAAAACCTGGAGGATATGATCAAGGCAATGAAGCTGCATGTTTATCTTGTGACGACAGCTGATGATGACATGCGAAGAGTCTTACATGACTGGCTCAAGCAAGGCACCCAGAAACAGGCAGACAACATGCGGAAGGCTTTACTTGATGATGGAAATAGACACGAGGCGTGGATGCTCTTTGAGAAGCAGTACTCTGAGTCGAGCATGCACCACATGGTTGTACTTTATACCTGTGTTATTGAAACCTTCATCAATGCTGGTAAGACGAAGGGTGCTCTGGAGGTGTACCAGCACATGTTGGATGATGGGTATGCTCCGTGCTCCTACACTTACTCTATTTTGATCAAGGCACTCGCTGCTGATCCCAGCTTCTTCGGAGATGCAAAGAAGTACTTTCTTGAGATGATGGAGAAAGGGATACGGCCCAATGCTGCTACCTACACTGCCGTGTTAGAGGGATTTGCAAGGCAGGAGGACAATGCAGCTGTGGAGGAAGGCAGAAAGTTTGTGAAGGTGATGATGGTCAAGGGGTTTGTGCCTTACACCGAGGATGTGATGAAGGTTTTAAGGGGGAAACCAGAACCTGCAGTTACAAGGGTCATGGATATCATGTCTTCCAAGTGGAACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

248

Amino Acids

28.42

Weight (kDa)

5.06

Isoelectric Point (pI)

31.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 107 - 197 4.5e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 110 - 156 5.8e-11 PPR repeat family
TPR_24 PF23276 111 - 198 8e-08 Fungal tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 703
AccB1I GGYRCC 1 cut(s) 215
AciI CCGC 1 cut(s) 241
AclWI GGATC 1 cut(s) 467
AfaI GTAC 4 cut(s) 302, 333, 398, 503
AfiI CCNNNNNNNGG 1 cut(s) 226
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 1 cut(s) 353
AjnI CCWGG 2 cut(s) 35, 117
AleI CACNNNNGTG 1 cut(s) 557
AluBI AGCT 4 cut(s) 145, 170, 480, 596
AluI AGCT 4 cut(s) 145, 170, 480, 596
Alw21I GWGCWC 2 cut(s) 388, 434
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 1 cut(s) 467
AlwNI CAGNNNCTG 1 cut(s) 695
AoxI GGCC 1 cut(s) 533
ApeKI GCWGC 4 cut(s) 145, 467, 542, 593
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
AspS9I GGNCC 1 cut(s) 534
AsuHPI GGTGA 1 cut(s) 637
BanI GGYRCC 1 cut(s) 215
BauI CACGAG 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 717
Bbv12I GWGCWC 2 cut(s) 388, 434
BbvI GCAGC 4 cut(s) 132, 454, 529, 605
BccI CCATC 4 cut(s) 254, 410, 511, 625
BceAI ACGGC 2 cut(s) 542, 548
BciT130I CCWGG 2 cut(s) 37, 119
BciVI GTATCC 1 cut(s) 522
BclI TGATCA 2 cut(s) 129, 453
BcoDI GTCTC 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 696
BfuAI ACCTGC 1 cut(s) 703
BfuI GTATCC 1 cut(s) 522
BisI GCNGC 4 cut(s) 146, 468, 543, 594
BlsI GCNGC 4 cut(s) 147, 469, 544, 595
BmcAI AGTACT 2 cut(s) 302, 503
Bme1390I CCNGG 2 cut(s) 37, 119
BmgT120I GGNCC 1 cut(s) 534
BmiI GGNNCC 2 cut(s) 68, 217
BmrFI CCNGG 2 cut(s) 37, 119
BmsI GCATC 2 cut(s) 273, 481
BpiI GAAGAC 1 cut(s) 717
BpmI CTGGAG 3 cut(s) 62, 140, 410
BpuEI CTTGAG 2 cut(s) 191, 530
BsaJI CCNNGG 2 cut(s) 70, 657
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 206
Bse3DI GCAATG 2 cut(s) 30, 144
BseBI CCWGG 2 cut(s) 37, 119
BseDI CCNNGG 2 cut(s) 70, 657
BseGI GGATG 3 cut(s) 288, 418, 667
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMI GCAATG 2 cut(s) 30, 144
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 4 cut(s) 132, 454, 529, 605
BseYI CCCAGC 1 cut(s) 476
BshFI GGCC 1 cut(s) 535
BshNI GGYRCC 1 cut(s) 215
BsiHKAI GWGCWC 2 cut(s) 388, 434
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 38
BsmBI CGTCTC 1 cut(s) 38
BsnI GGCC 1 cut(s) 535
Bsp1286I GDGCHC 2 cut(s) 388, 434
Bsp143I GATC 3 cut(s) 129, 453, 472
BspACI CCGC 1 cut(s) 241
BspANI GGCC 1 cut(s) 535
BspCNI CTCAG 1 cut(s) 298
BspLI GGNNCC 2 cut(s) 68, 217
BspMAI CTGCAG 1 cut(s) 700
BspMI ACCTGC 1 cut(s) 703
BspPI GGATC 1 cut(s) 467
BspT107I GGYRCC 1 cut(s) 215
BsrDI GCAATG 2 cut(s) 30, 144
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 70, 657
BssMI GATC 3 cut(s) 129, 453, 472
BssSI CACGAG 1 cut(s) 272
BssT1I CCWWGG 1 cut(s) 70
Bst2BI CACGAG 1 cut(s) 272
Bst2UI CCWGG 2 cut(s) 37, 119
Bst4CI ACNGT 2 cut(s) 49, 95
Bst6I CTCTTC 1 cut(s) 181
BstAPI GCANNNNNTGC 2 cut(s) 32, 467
BstC8I GCNNGC 1 cut(s) 317
BstDEI CTNAG 1 cut(s) 306
BstF5I GGATG 3 cut(s) 288, 418, 667
BstKTI GATC 3 cut(s) 132, 456, 475
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 3 cut(s) 129, 453, 472
BstMWI GCNNNNNNNGC 2 cut(s) 32, 467
BstNI CCWGG 2 cut(s) 37, 119
BstNSI RCATGY 5 cut(s) 152, 184, 241, 319, 409
BstSCI CCNGG 2 cut(s) 35, 117
BstSFI CTRYAG 1 cut(s) 696
BstV1I GCAGC 4 cut(s) 132, 454, 529, 605
BstV2I GAAGAC 1 cut(s) 717
BsuI GTATCC 1 cut(s) 522
BsuRI GGCC 1 cut(s) 535
BtsCI GGATG 3 cut(s) 288, 418, 667
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 1 cut(s) 552
BveI ACCTGC 1 cut(s) 703
Cac8I GCNNGC 1 cut(s) 317
CaiI CAGNNNCTG 1 cut(s) 695
Cfr13I GGNCC 1 cut(s) 534
Csp6I GTAC 4 cut(s) 301, 332, 397, 502
CviAII CATG 9 cut(s) 149, 181, 197, 238, 316, 325, 406, 712, 721
CviJI RGCY 8 cut(s) 40, 145, 170, 205, 248, 480, 535, 596
CviKI_1 RGCY 8 cut(s) 40, 145, 170, 205, 248, 480, 535, 596
CviQI GTAC 4 cut(s) 301, 332, 397, 502
DdeI CTNAG 1 cut(s) 306
DpnI GATC 3 cut(s) 131, 455, 474
DpnII GATC 3 cut(s) 129, 453, 472
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 70
Eco32I GATATC 1 cut(s) 718
EcoRII CCWGG 2 cut(s) 35, 117
EcoRV GATATC 1 cut(s) 718
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 9 cut(s) 152, 184, 200, 241, 319, 328, 409, 715, 724
FalI AAGNNNNNCTT 2 cut(s) 488, 520
FatI CATG 9 cut(s) 148, 180, 196, 237, 315, 324, 405, 711, 720
FbaI TGATCA 2 cut(s) 129, 453
Fnu4HI GCNGC 4 cut(s) 146, 468, 543, 594
FokI GGATG 3 cut(s) 295, 425, 674
Fsp4HI GCNGC 4 cut(s) 146, 468, 543, 594
GluI GCNGC 4 cut(s) 146, 468, 543, 594
GsaI CCCAGC 1 cut(s) 480
GsuI CTGGAG 3 cut(s) 62, 140, 410
HaeIII GGCC 1 cut(s) 535
Hin1II CATG 9 cut(s) 152, 184, 200, 241, 319, 328, 409, 715, 724
HinfI GANTC 2 cut(s) 189, 308
HphI GGTGA 1 cut(s) 637
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 2 cut(s) 307, 488
Hpy188III TCNNGA 3 cut(s) 83, 389, 509
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 7 cut(s) 8, 238, 367, 373, 599, 616, 664
HpyCH4III ACNGT 2 cut(s) 49, 95
HpyCH4V TGCA 7 cut(s) 26, 148, 319, 494, 575, 593, 698
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 467
HpyF3I CTNAG 1 cut(s) 306
Hsp92II CATG 9 cut(s) 152, 184, 200, 241, 319, 328, 409, 715, 724
Ksp22I TGATCA 2 cut(s) 129, 453
Kzo9I GATC 3 cut(s) 129, 453, 472
LmnI GCTCC 2 cut(s) 430, 437
Lsp1109I GCAGC 4 cut(s) 132, 454, 529, 605
LweI GCATC 2 cut(s) 273, 481
MaeIII GTNAC 2 cut(s) 160, 700
MalI GATC 3 cut(s) 131, 455, 474
MboI GATC 3 cut(s) 129, 453, 472
MboII GAAGA 3 cut(s) 198, 475, 717
MhlI GDGCHC 2 cut(s) 388, 434
MlyI GAGTC 2 cut(s) 198, 317
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 9 cut(s) 46, 49, 115, 268, 385, 559, 577, 595, 652
MseI TTAA 1 cut(s) 677
MslI CAYNNNNRTG 1 cut(s) 557
MspA1I CMGCKG 2 cut(s) 170, 596
MspR9I CCNGG 2 cut(s) 37, 119
MvaI CCWGG 2 cut(s) 37, 119
MwoI GCNNNNNNNGC 2 cut(s) 32, 467
NdeII GATC 3 cut(s) 129, 453, 472
NlaIII CATG 9 cut(s) 152, 184, 200, 241, 319, 328, 409, 715, 724
NlaIV GGNNCC 2 cut(s) 68, 217
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 5 cut(s) 152, 184, 241, 319, 409
OliI CACNNNNGTG 1 cut(s) 557
PaeI GCATGC 1 cut(s) 319
PciI ACATGT 1 cut(s) 405
PkrI GCNGC 4 cut(s) 147, 469, 544, 595
PleI GAGTC 2 cut(s) 197, 316
PpsI GAGTC 2 cut(s) 197, 316
PscI ACATGT 1 cut(s) 405
Psp6I CCWGG 2 cut(s) 35, 117
PspFI CCCAGC 1 cut(s) 476
PspGI CCWGG 2 cut(s) 35, 117
PspN4I GGNNCC 2 cut(s) 68, 217
PspPI GGNCC 1 cut(s) 534
PstI CTGCAG 1 cut(s) 700
PstNI CAGNNNCTG 1 cut(s) 695
PvuII CAGCTG 2 cut(s) 170, 596
RsaI GTAC 4 cut(s) 302, 333, 398, 503
RsaNI GTAC 4 cut(s) 301, 332, 397, 502
RseI CAYNNNNRTG 1 cut(s) 557
SaqAI TTAA 1 cut(s) 677
SatI GCNGC 4 cut(s) 146, 468, 543, 594
Sau3AI GATC 3 cut(s) 129, 453, 472
Sau96I GGNCC 1 cut(s) 534
ScaI AGTACT 2 cut(s) 302, 503
SchI GAGTC 2 cut(s) 198, 317
ScrFI CCNGG 2 cut(s) 37, 119
SduI GDGCHC 2 cut(s) 388, 434
SfaNI GCATC 2 cut(s) 273, 481
SfcI CTRYAG 1 cut(s) 696
SmiMI CAYNNNNRTG 1 cut(s) 557
SmlI CTYRAG 2 cut(s) 206, 509
SmoI CTYRAG 2 cut(s) 206, 509
SphI GCATGC 1 cut(s) 319
SsiI CCGC 1 cut(s) 241
StyD4I CCNGG 2 cut(s) 35, 117
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 2 cut(s) 49, 95
TaqI TCGA 1 cut(s) 311
TatI WGTACW 3 cut(s) 300, 331, 501
Tru1I TTAA 1 cut(s) 677
Tru9I TTAA 1 cut(s) 677
TscAI CASTG 1 cut(s) 559
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 4 cut(s) 145, 467, 542, 593
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 3 cut(s) 155, 349, 683
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 1 cut(s) 559
XceI RCATGY 5 cut(s) 152, 184, 241, 319, 409
ZrmI AGTACT 2 cut(s) 302, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.