RchiOBHm_Chr7g0236101

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000101
Physical Location & Seq
Forward (+)
60983605 .. 60984301
697 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21158

Sequence Viewer

Length: 678 bp
ATGGTGATTATGGCCTATGCCGGCAATGGCAAGACCAAGGATGCTCACAAGGTCTACCAGCAGATGATAGCCTCCAGTGTCACCCCCACCACCTACACTTACACAGTACTCATCTGCGGATTTGCAAAAGACTTTTCGGATTCTAGTTTTGTTGGGTATGCCAAGAAGTATTTCCTTGAAATGTTGGATAGGGGGATGAAGCCCCAATATCAACCCTACATGTATGTTATGGACGCCATTGCCTACCGAGAGCCAGTGGAGGAGGTCAAGAAGTTCCTTGAGCAGATAAAAGCTAAGGGGTTCATCCCTGAAATCGATGGTTTTCAATACAAAGACGACCACCTCACAGAAGCACTGCAGGAAATGAAAACGTATGTTGATCTTGTCAACAAGAACATCACTGACAAGGCTGTTCAAAAATTGTTCTGCGAGTCACGCACCTGCCCCTGGATAGAACGGTCGATGGAGATGCACAAGGCTTTGGTAGAGGATGGAAATGGGCATGAGGCCATCGAGTTCTATCAAACCATTCAACAGACAGCCGTAGAGCCATTGGTCCAAATCCACACCTCTGTTATGAAAGCCTACCTCAAGTTGGGCAAGACCAAGGGTGCTCTGGAGGCGTATCTGGCCATGGGTCGCCCCCAACTCCTACAGGCTACACTTACACTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

225

Amino Acids

25.72

Weight (kDa)

6.53

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 2 - 43 1.8e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 449
Acc36I ACCTGC 1 cut(s) 449
AccI GTMKAC 1 cut(s) 54
AciI CCGC 1 cut(s) 117
AcoI YGGCCR 1 cut(s) 630
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 2 cut(s) 447, 595
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 4 cut(s) 179, 326, 416, 533
AjnI CCWGG 1 cut(s) 446
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw21I GWGCWC 1 cut(s) 616
AoxI GGCC 3 cut(s) 12, 507, 630
Asp700I GAANNNNTTC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 556
AsuHPI GGTGA 2 cut(s) 16, 73
AvaII GGWCC 1 cut(s) 556
BalI TGGCCA 1 cut(s) 632
Bbv12I GWGCWC 1 cut(s) 616
BccI CCATC 4 cut(s) 311, 457, 485, 518
BceAI ACGGC 1 cut(s) 527
BcgI CGANNNNNNTGC 2 cut(s) 451, 485
BciT130I CCWGG 1 cut(s) 448
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 2 cut(s) 356, 653
BfuAI ACCTGC 1 cut(s) 449
BmcAI AGTACT 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 448
Bme18I GGWCC 1 cut(s) 556
BmgT120I GGNCC 1 cut(s) 556
BmrFI CCNGG 1 cut(s) 448
BmsI GCATC 2 cut(s) 31, 459
BpmI CTGGAG 2 cut(s) 58, 638
Bpu10I CCTNAGC 1 cut(s) 294
BpuEI CTTGAG 2 cut(s) 299, 575
Bsa29I ATCGAT 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 4 cut(s) 36, 446, 606, 633
Bsc4I CCNNNNNNNGG 2 cut(s) 447, 595
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 75, 254
Bse3DI GCAATG 2 cut(s) 31, 237
BseBI CCWGG 1 cut(s) 448
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 4 cut(s) 36, 446, 606, 633
BseGI GGATG 4 cut(s) 46, 201, 303, 496
BseLI CCNNNNNNNGG 2 cut(s) 447, 595
BseMI GCAATG 2 cut(s) 31, 237
BseNI ACTGG 2 cut(s) 75, 254
BseRI GAGGAG 1 cut(s) 275
Bsh1285I CGRYCG 1 cut(s) 461
BshFI GGCC 3 cut(s) 14, 509, 632
BshVI ATCGAT 1 cut(s) 315
BsiEI CGRYCG 1 cut(s) 461
BsiHKAI GWGCWC 1 cut(s) 616
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 447, 595
BsnI GGCC 3 cut(s) 14, 509, 632
Bsp1286I GDGCHC 1 cut(s) 616
Bsp143I GATC 1 cut(s) 379
Bsp19I CCATGG 1 cut(s) 633
BspACI CCGC 1 cut(s) 117
BspANI GGCC 3 cut(s) 14, 509, 632
BspDI ATCGAT 1 cut(s) 315
BspMAI CTGCAG 1 cut(s) 360
BspMI ACCTGC 1 cut(s) 449
BsrDI GCAATG 2 cut(s) 31, 237
BsrFI RCCGGY 1 cut(s) 20
BsrI ACTGG 2 cut(s) 75, 254
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 4 cut(s) 36, 446, 606, 633
BssMI GATC 1 cut(s) 379
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 3 cut(s) 36, 606, 633
Bst2UI CCWGG 1 cut(s) 448
Bst4CI ACNGT 3 cut(s) 106, 459, 672
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 1 cut(s) 633
BstF5I GGATG 4 cut(s) 46, 201, 303, 496
BstKTI GATC 1 cut(s) 382
BstMBI GATC 1 cut(s) 379
BstMCI CGRYCG 1 cut(s) 461
BstMWI GCNNNNNNNGC 3 cut(s) 435, 620, 629
BstNI CCWGG 1 cut(s) 448
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 446
BstSFI CTRYAG 2 cut(s) 356, 653
Bsu15I ATCGAT 1 cut(s) 315
BsuRI GGCC 3 cut(s) 14, 509, 632
BsuTUI ATCGAT 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 633
BtsCI GGATG 4 cut(s) 46, 201, 303, 496
BtsI GCAGTG 1 cut(s) 353
BtsIMutI CAGTG 5 cut(s) 82, 261, 353, 399, 668
BveI ACCTGC 1 cut(s) 449
Cac8I GCNNGC 1 cut(s) 22
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 556
ClaI ATCGAT 1 cut(s) 315
CseI GACGC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 107
CviAII CATG 3 cut(s) 220, 503, 634
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 1 cut(s) 294
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 630
Eco130I CCWWGG 3 cut(s) 36, 606, 633
Eco47I GGWCC 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 446
EcoT14I CCWWGG 3 cut(s) 36, 606, 633
ErhI CCWWGG 3 cut(s) 36, 606, 633
FaeI CATG 3 cut(s) 223, 506, 637
FatI CATG 3 cut(s) 219, 502, 633
FblI GTMKAC 1 cut(s) 54
FokI GGATG 4 cut(s) 53, 208, 290, 503
FspBI CTAG 1 cut(s) 144
GsuI CTGGAG 2 cut(s) 58, 638
HaeIII GGCC 3 cut(s) 14, 509, 632
HapII CCGG 1 cut(s) 21
HgaI GACGC 1 cut(s) 242
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 3 cut(s) 223, 506, 637
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 2 cut(s) 140, 431
HpaII CCGG 1 cut(s) 21
HphI GGTGA 2 cut(s) 16, 73
Hpy166II GTNNAC 2 cut(s) 55, 388
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 268, 617
Hpy8I GTNNAC 2 cut(s) 55, 388
HpyCH4III ACNGT 3 cut(s) 106, 459, 672
HpyCH4IV ACGT 1 cut(s) 371
HpyCH4V TGCA 3 cut(s) 125, 358, 472
HpyF10VI GCNNNNNNNGC 3 cut(s) 435, 620, 629
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 371
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 3 cut(s) 223, 506, 637
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Kzo9I GATC 1 cut(s) 379
LweI GCATC 2 cut(s) 31, 459
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 371
MaeIII GTNAC 2 cut(s) 79, 432
MalI GATC 1 cut(s) 381
MboI GATC 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 616
MlsI TGGCCA 1 cut(s) 632
MluCI AATT 1 cut(s) 419
MluNI TGGCCA 1 cut(s) 632
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 9 cut(s) 82, 253, 256, 353, 481, 499, 580, 599, 613
Mox20I TGGCCA 1 cut(s) 632
MroNI GCCGGC 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 170
MscI TGGCCA 1 cut(s) 632
Msp20I TGGCCA 1 cut(s) 632
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 448
MvaI CCWGG 1 cut(s) 448
MwoI GCNNNNNNNGC 3 cut(s) 435, 620, 629
NaeI GCCGGC 1 cut(s) 22
NcoI CCATGG 1 cut(s) 633
NdeII GATC 1 cut(s) 379
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 3 cut(s) 223, 506, 637
NmuCI GTSAC 2 cut(s) 79, 432
NspI RCATGY 1 cut(s) 223
PaqCI CACCTGC 1 cut(s) 449
PciI ACATGT 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 140
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
PscI ACATGT 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 446
PspGI CCWGG 1 cut(s) 446
PspPI GGNCC 1 cut(s) 556
PstI CTGCAG 1 cut(s) 360
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
Sau3AI GATC 1 cut(s) 379
Sau96I GGNCC 1 cut(s) 556
ScaI AGTACT 1 cut(s) 108
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 448
SduI GDGCHC 1 cut(s) 616
SetI ASST 9 cut(s) 54, 95, 267, 295, 345, 374, 443, 572, 591
SfaNI GCATC 2 cut(s) 31, 459
SfcI CTRYAG 2 cut(s) 356, 653
SinI GGWCC 1 cut(s) 556
SmlI CTYRAG 2 cut(s) 278, 590
SmoI CTYRAG 2 cut(s) 278, 590
Sse9I AATT 1 cut(s) 419
SsiI CCGC 1 cut(s) 117
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 446
StyI CCWWGG 3 cut(s) 36, 606, 633
TaaI ACNGT 3 cut(s) 106, 459, 672
TaiI ACGT 1 cut(s) 374
TaqI TCGA 3 cut(s) 315, 461, 513
TasI AATT 1 cut(s) 419
TatI WGTACW 1 cut(s) 106
TfiI GAWTC 1 cut(s) 140
TscAI CASTG 5 cut(s) 82, 261, 360, 406, 675
TseFI GTSAC 2 cut(s) 79, 432
Tsp45I GTSAC 2 cut(s) 79, 432
TspDTI ATGAA 4 cut(s) 212, 292, 380, 593
TspRI CASTG 5 cut(s) 82, 261, 360, 406, 675
VpaK11BI GGWCC 1 cut(s) 556
XceI RCATGY 1 cut(s) 223
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XmiI GTMKAC 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 1 cut(s) 144
ZrmI AGTACT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.