Rorug07G0294000

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000101
Physical Location & Seq
Forward (+)
28734431 .. 28736014
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0294000.1

Sequence Viewer

Length: 969 bp
ATGACTGCGGAAGAGATTAAGGGAATGAGAGAGCAGTACTGTATTCCAGGCACTGTCGGGCTACGGCTGCTGAGGAAGGGTGAGTCCGCGCATGATCCTCCCGAGGGTCACATAGCCATTCATCATGCGCAAGTGAAGATGGGATTGTATCTTCCGCTGAACCCCTTCATGCAACGCATTCTGTCTGGGTTGAAAGTTTCTGTTGGGCACGTTTTGCTCATCATGCTGCGAGTGTTACAAGCTTTCCATGTAGTATGGCGAGTTTACAGGTTAGGATTTCCCACTAGAGCGGAAGTGATGCATTACTACGCTCTGCAATATTCCCGAAAGCAGAAGTGTTCTGGGCCCTTTGGCTTGACCTCTCGGAGGGACATCATGAAGGACCATAGGATCTTCGTGGACGCTCCCAACTTGACCACTAACTGGCGCACGACTGTGTGCTTCGCGTATGGGGATTGGGAGAGAGGTAGGAGTAACACTATTGATCGATATGGCACTGATGACGTTCCACAAAAGTGTCAAACTAAAGAGGAAAATGAGGAGGAGAATGAGGAGGCACACCAGAAGAGGTCTGAGAAGGGAAAGCGGGTTGAGACGGCTGCTGTGCCTAAGCGGAAGCGGAGGCACATTGAGGCTGTTAAGGGTGTTGAAATAACTGAGCTTGGCGCCATGGTTTCTATTGCCATGCCTTCGCTTAGCTTGCCAGTTCCAGCCAAGACCAAGAAAAGCCTAAAGAAGATGGCGGAAGAGTACAAGGTGAAGGATGCGTCATACCTTGTCGAGGTCACTGAGATCTCAGGCAAGATGAATTTTTATGACCATGTCACCTTGGGTCACTGTTCGCCCTTGGAAGCCAAGCAGAAGATTTGGGAGAAGCGATCGAGATTGGGCACAAAATTTTTGTCAGTAAAGAATTTGAGGAGGAGAGCGAATGAAAAGGCAACTGCAGGTGCCCCACGGCGAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

322

Amino Acids

36.84

Weight (kDa)

9.8

Isoelectric Point (pI)

61.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 938
Acc16I TGCGCA 1 cut(s) 129
Acc36I ACCTGC 1 cut(s) 938
AccB1I GGYRCC 2 cut(s) 665, 950
AccB7I CCANNNNNTGG 1 cut(s) 423
AccBSI CCGCTC 1 cut(s) 290
AccII CGCG 2 cut(s) 89, 446
AciI CCGC 8 cut(s) 8, 87, 155, 290, 586, 613, 619, 743
AclWI GGATC 2 cut(s) 89, 398
AcsI RAATTY 3 cut(s) 808, 896, 913
AcyI GRCGYC 1 cut(s) 666
AfaI GTAC 2 cut(s) 38, 752
AfiI CCNNNNNNNGG 4 cut(s) 104, 366, 423, 781
AgsI TTSAA 2 cut(s) 193, 650
AjnI CCWGG 1 cut(s) 46
AleI CACNNNNGTG 2 cut(s) 434, 514
AluBI AGCT 3 cut(s) 242, 661, 699
AluI AGCT 3 cut(s) 242, 661, 699
Alw26I GTCTC 1 cut(s) 587
AlwI GGATC 2 cut(s) 89, 398
AlwNI CAGNNNCTG 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 1 cut(s) 344
ApaI GGGCCC 1 cut(s) 348
ApeKI GCWGC 3 cut(s) 67, 226, 599
ApoI RAATTY 3 cut(s) 808, 896, 913
ArsI GACNNNNNNTTYG 2 cut(s) 887, 919
Asp700I GAANNNNTTC 1 cut(s) 164
AspLEI GCGC 4 cut(s) 91, 130, 429, 668
AspS9I GGNCC 3 cut(s) 344, 345, 382
AsuHPI GGTGA 3 cut(s) 92, 769, 817
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 1 cut(s) 382
BaeGI GKGCMC 4 cut(s) 210, 348, 893, 955
BanI GGYRCC 2 cut(s) 665, 950
BanII GRGCYC 1 cut(s) 348
BbvCI CCTCAGC 1 cut(s) 71
BbvI GCAGC 3 cut(s) 54, 213, 586
BccI CCATC 2 cut(s) 133, 733
BceAI ACGGC 2 cut(s) 80, 612
BciT130I CCWGG 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 587
BfaI CTAG 1 cut(s) 285
BfmI CTRYAG 1 cut(s) 945
BfoI RGCGCY 1 cut(s) 669
BfuAI ACCTGC 1 cut(s) 938
BglII AGATCT 1 cut(s) 792
BisI GCNGC 3 cut(s) 68, 227, 600
BlpI GCTNAGC 1 cut(s) 695
BlsI GCNGC 3 cut(s) 69, 228, 601
BmcAI AGTACT 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 382
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 3 cut(s) 344, 345, 382
BmiI GGNNCC 3 cut(s) 346, 667, 952
BmrFI CCNGG 1 cut(s) 48
BmsI GCATC 2 cut(s) 288, 754
Bpu10I CCTNAGC 2 cut(s) 71, 609
Bpu1102I GCTNAGC 1 cut(s) 695
Bsa29I ATCGAT 1 cut(s) 487
BsaHI GRCGYC 1 cut(s) 666
BsaJI CCNNGG 5 cut(s) 102, 669, 828, 846, 956
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 366, 423, 781
Bse1I ACTGG 2 cut(s) 428, 704
BseBI CCWGG 1 cut(s) 48
BseCI ATCGAT 1 cut(s) 487
BseDI CCNNGG 5 cut(s) 102, 669, 828, 846, 956
BseGI GGATG 1 cut(s) 769
BseLI CCNNNNNNNGG 4 cut(s) 104, 366, 423, 781
BseMII CTCAG 5 cut(s) 62, 564, 648, 780, 810
BseNI ACTGG 2 cut(s) 428, 704
BseRI GAGGAG 5 cut(s) 554, 557, 566, 934, 937
BseSI GKGCMC 4 cut(s) 210, 348, 893, 955
BseXI GCAGC 3 cut(s) 54, 213, 586
Bsh1236I CGCG 2 cut(s) 89, 446
Bsh1285I CGRYCG 1 cut(s) 881
BshFI GGCC 1 cut(s) 346
BshNI GGYRCC 2 cut(s) 665, 950
BshVI ATCGAT 1 cut(s) 487
BsiEI CGRYCG 1 cut(s) 881
BsiHKCI CYCGRG 1 cut(s) 101
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 4 cut(s) 104, 366, 423, 781
BsmAI GTCTC 1 cut(s) 587
BsmBI CGTCTC 1 cut(s) 587
BsmFI GGGAC 1 cut(s) 383
BsmI GAATGC 1 cut(s) 177
BsnI GGCC 1 cut(s) 346
BsoBI CYCGRG 1 cut(s) 101
Bsp120I GGGCCC 1 cut(s) 344
Bsp1286I GDGCHC 4 cut(s) 210, 348, 893, 955
Bsp143I GATC 5 cut(s) 94, 390, 484, 792, 878
Bsp1720I GCTNAGC 1 cut(s) 695
Bsp19I CCATGG 1 cut(s) 669
BspACI CCGC 8 cut(s) 8, 87, 155, 290, 586, 613, 619, 743
BspANI GGCC 1 cut(s) 346
BspCNI CTCAG 5 cut(s) 63, 565, 649, 781, 809
BspDI ATCGAT 1 cut(s) 487
BspFNI CGCG 2 cut(s) 89, 446
BspHI TCATGA 1 cut(s) 375
BspLI GGNNCC 3 cut(s) 346, 667, 952
BspMAI CTGCAG 1 cut(s) 949
BspMI ACCTGC 1 cut(s) 938
BspPI GGATC 2 cut(s) 89, 398
BspT107I GGYRCC 2 cut(s) 665, 950
BsrBI CCGCTC 1 cut(s) 290
BsrI ACTGG 2 cut(s) 428, 704
BssECI CCNNGG 5 cut(s) 102, 669, 828, 846, 956
BssMI GATC 5 cut(s) 94, 390, 484, 792, 878
BssNI GRCGYC 1 cut(s) 666
BssT1I CCWWGG 3 cut(s) 669, 828, 846
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 4 cut(s) 41, 55, 436, 839
Bst6I CTCTTC 3 cut(s) 6, 560, 741
BstACI GRCGYC 1 cut(s) 666
BstAPI GCANNNNNTGC 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 701
BstDEI CTNAG 7 cut(s) 71, 573, 609, 657, 695, 789, 796
BstDSI CCRYGG 2 cut(s) 669, 956
BstENI CCTNNNNNAGG 2 cut(s) 364, 779
BstF5I GGATG 1 cut(s) 769
BstFNI CGCG 2 cut(s) 89, 446
BstH2I RGCGCY 1 cut(s) 669
BstHHI GCGC 4 cut(s) 91, 130, 429, 668
BstKTI GATC 5 cut(s) 97, 393, 487, 795, 881
BstMAI GTCTC 1 cut(s) 587
BstMBI GATC 5 cut(s) 94, 390, 484, 792, 878
BstMCI CGRYCG 1 cut(s) 881
BstMWI GCNNNNNNNGC 4 cut(s) 67, 214, 223, 700
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 945
BstSLI GKGCMC 4 cut(s) 210, 348, 893, 955
BstUI CGCG 2 cut(s) 89, 446
BstV1I GCAGC 3 cut(s) 54, 213, 586
BstX2I RGATCY 2 cut(s) 390, 792
BstYI RGATCY 2 cut(s) 390, 792
Bsu15I ATCGAT 1 cut(s) 487
BsuRI GGCC 1 cut(s) 346
BsuTUI ATCGAT 1 cut(s) 487
BtgI CCRYGG 2 cut(s) 669, 956
BtsCI GGATG 1 cut(s) 769
BtsIMutI CAGTG 4 cut(s) 51, 495, 786, 835
BveI ACCTGC 1 cut(s) 938
Cac8I GCNNGC 1 cut(s) 701
CaiI CAGNNNCTG 1 cut(s) 53
CciI TCATGA 1 cut(s) 375
CfoI GCGC 4 cut(s) 91, 130, 429, 668
Cfr13I GGNCC 3 cut(s) 344, 345, 382
ClaI ATCGAT 1 cut(s) 487
CseI GACGC 2 cut(s) 410, 756
Csp6I GTAC 2 cut(s) 37, 751
CviAII CATG 9 cut(s) 92, 125, 169, 223, 248, 376, 670, 685, 821
CviQI GTAC 2 cut(s) 37, 751
DdeI CTNAG 7 cut(s) 71, 573, 609, 657, 695, 789, 796
DinI GGCGCC 1 cut(s) 667
DpnI GATC 5 cut(s) 96, 392, 486, 794, 880
DpnII GATC 5 cut(s) 94, 390, 484, 792, 878
Eam1104I CTCTTC 3 cut(s) 6, 560, 741
EarI CTCTTC 3 cut(s) 6, 560, 741
EciI GGCGGA 1 cut(s) 758
Eco130I CCWWGG 3 cut(s) 669, 828, 846
Eco24I GRGCYC 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 382
Eco88I CYCGRG 1 cut(s) 101
EcoNI CCTNNNNNAGG 2 cut(s) 364, 779
EcoO109I RGGNCCY 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 46
EcoT14I CCWWGG 3 cut(s) 669, 828, 846
EcoT22I ATGCAT 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 348
EgeI GGCGCC 1 cut(s) 667
EheI GGCGCC 1 cut(s) 667
ErhI CCWWGG 3 cut(s) 669, 828, 846
Esp3I CGTCTC 1 cut(s) 587
FaeI CATG 9 cut(s) 95, 128, 172, 226, 251, 379, 673, 688, 824
FaqI GGGAC 1 cut(s) 383
FatI CATG 9 cut(s) 91, 124, 168, 222, 247, 375, 669, 684, 820
FauI CCCGC 1 cut(s) 579
Fnu4HI GCNGC 3 cut(s) 68, 227, 600
FokI GGATG 1 cut(s) 776
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 3 cut(s) 68, 227, 600
FspBI CTAG 1 cut(s) 285
FspI TGCGCA 1 cut(s) 129
GlaI GCGC 4 cut(s) 90, 129, 428, 667
GluI GCNGC 3 cut(s) 68, 227, 600
HaeII RGCGCY 1 cut(s) 669
HaeIII GGCC 1 cut(s) 346
HgaI GACGC 2 cut(s) 410, 756
HhaI GCGC 4 cut(s) 91, 130, 429, 668
Hin1I GRCGYC 1 cut(s) 666
Hin1II CATG 9 cut(s) 95, 128, 172, 226, 251, 379, 673, 688, 824
Hin6I GCGC 4 cut(s) 89, 128, 427, 666
HinP1I GCGC 4 cut(s) 89, 128, 427, 666
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 1 cut(s) 83
HphI GGTGA 3 cut(s) 92, 769, 817
Hpy166II GTNNAC 2 cut(s) 265, 400
Hpy188I TCNGA 2 cut(s) 366, 574
Hpy188III TCNNGA 4 cut(s) 101, 324, 376, 882
Hpy8I GTNNAC 2 cut(s) 265, 400
HpyAV CCTTC 6 cut(s) 70, 175, 373, 571, 699, 754
HpyCH4III ACNGT 4 cut(s) 41, 55, 436, 839
HpyCH4IV ACGT 2 cut(s) 210, 504
HpyCH4V TGCA 4 cut(s) 172, 301, 316, 947
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 214, 223, 700
HpyF3I CTNAG 7 cut(s) 71, 573, 609, 657, 695, 789, 796
HpySE526I ACGT 2 cut(s) 210, 504
Hsp92I GRCGYC 1 cut(s) 666
Hsp92II CATG 9 cut(s) 95, 128, 172, 226, 251, 379, 673, 688, 824
HspAI GCGC 4 cut(s) 89, 128, 427, 666
KasI GGCGCC 1 cut(s) 665
Kzo9I GATC 5 cut(s) 94, 390, 484, 792, 878
LmnI GCTCC 1 cut(s) 409
Lsp1109I GCAGC 3 cut(s) 54, 213, 586
LweI GCATC 2 cut(s) 288, 754
MaeI CTAG 1 cut(s) 285
MaeII ACGT 2 cut(s) 210, 504
MaeIII GTNAC 6 cut(s) 107, 234, 473, 784, 823, 833
MalI GATC 5 cut(s) 96, 392, 486, 794, 880
MbiI CCGCTC 1 cut(s) 290
MboI GATC 5 cut(s) 94, 390, 484, 792, 878
MboII GAAGA 8 cut(s) 23, 143, 148, 385, 577, 748, 758, 874
MflI RGATCY 2 cut(s) 390, 792
MhlI GDGCHC 4 cut(s) 210, 348, 893, 955
MluCI AATT 3 cut(s) 808, 896, 913
Mly113I GGCGCC 1 cut(s) 666
MlyI GAGTC 1 cut(s) 92
Mph1103I ATGCAT 1 cut(s) 303
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 2 cut(s) 18, 639
MslI CAYNNNNRTG 2 cut(s) 434, 514
MspA1I CMGCKG 1 cut(s) 157
MspR9I CCNGG 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 177
MvaI CCWGG 1 cut(s) 48
MvnI CGCG 2 cut(s) 89, 446
MwoI GCNNNNNNNGC 4 cut(s) 67, 214, 223, 700
NarI GGCGCC 1 cut(s) 666
NcoI CCATGG 1 cut(s) 669
NdeII GATC 5 cut(s) 94, 390, 484, 792, 878
NlaIII CATG 9 cut(s) 95, 128, 172, 226, 251, 379, 673, 688, 824
NlaIV GGNNCC 3 cut(s) 346, 667, 952
NmuCI GTSAC 4 cut(s) 107, 784, 823, 833
NsbI TGCGCA 1 cut(s) 129
NsiI ATGCAT 1 cut(s) 303
OliI CACNNNNGTG 2 cut(s) 434, 514
PagI TCATGA 1 cut(s) 375
PaqCI CACCTGC 1 cut(s) 938
PctI GAATGC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 164
PflFI GACNNNGTC 1 cut(s) 821
PflMI CCANNNNNTGG 1 cut(s) 423
PkrI GCNGC 3 cut(s) 69, 228, 601
Ple19I CGATCG 1 cut(s) 881
PleI GAGTC 1 cut(s) 91
PluTI GGCGCC 1 cut(s) 669
PpsI GAGTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 3 cut(s) 346, 667, 952
PspOMI GGGCCC 1 cut(s) 344
PspPI GGNCC 3 cut(s) 344, 345, 382
PstI CTGCAG 1 cut(s) 949
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 2 cut(s) 390, 792
PsyI GACNNNGTC 1 cut(s) 821
PvuI CGATCG 1 cut(s) 881
RsaI GTAC 2 cut(s) 38, 752
RsaNI GTAC 2 cut(s) 37, 751
RseI CAYNNNNRTG 2 cut(s) 434, 514
SaqAI TTAA 2 cut(s) 18, 639
SatI GCNGC 3 cut(s) 68, 227, 600
Sau3AI GATC 5 cut(s) 94, 390, 484, 792, 878
Sau96I GGNCC 3 cut(s) 344, 345, 382
ScaI AGTACT 1 cut(s) 38
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 4 cut(s) 210, 348, 893, 955
SfaNI GCATC 2 cut(s) 288, 754
SfcI CTRYAG 1 cut(s) 945
SfoI GGCGCC 1 cut(s) 667
SinI GGWCC 1 cut(s) 382
SmiMI CAYNNNNRTG 2 cut(s) 434, 514
Sse9I AATT 3 cut(s) 808, 896, 913
SsiI CCGC 8 cut(s) 8, 87, 155, 290, 586, 613, 619, 743
SspDI GGCGCC 1 cut(s) 665
SspI AATATT 1 cut(s) 320
SspMI CTAG 1 cut(s) 285
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 3 cut(s) 669, 828, 846
TaaI ACNGT 4 cut(s) 41, 55, 436, 839
TaiI ACGT 2 cut(s) 213, 507
TaqI TCGA 3 cut(s) 487, 780, 881
TasI AATT 3 cut(s) 808, 896, 913
TatI WGTACW 2 cut(s) 36, 750
Tru1I TTAA 2 cut(s) 18, 639
Tru9I TTAA 2 cut(s) 18, 639
TscAI CASTG 4 cut(s) 58, 502, 793, 842
TseFI GTSAC 4 cut(s) 107, 784, 823, 833
TseI GCWGC 3 cut(s) 67, 226, 599
Tsp45I GTSAC 4 cut(s) 107, 784, 823, 833
TspDTI ATGAA 5 cut(s) 110, 157, 392, 821, 948
TspRI CASTG 4 cut(s) 58, 502, 793, 842
Tth111I GACNNNGTC 1 cut(s) 821
Van91I CCANNNNNTGG 1 cut(s) 423
VpaK11BI GGWCC 1 cut(s) 382
XagI CCTNNNNNAGG 2 cut(s) 364, 779
XapI RAATTY 3 cut(s) 808, 896, 913
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 1 cut(s) 285
ZrmI AGTACT 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.