Rroxscaffold_3G00225500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000101
Physical Location & Seq
Reverse (-)
8718102 .. 8719358
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225500.1

Sequence Viewer

Length: 1257 bp
ATGGCGGAGTCTAAGGTGAAGTCCAATTCTTGTGCGGATGACCTCGAGAAACATGTAATGAAGGTTTTCAAGGAGGCCACCAAAGACTGTGAGGACAAGGAAGTGAAAGAAATATTTGACATGATTAGGAACTATGACGACCTTAATAAGTATGCAATTTCGGTGTTCAATTCCATGGCAAATGACAAGTTTATTGAGGTAGCTAGAGAGCTCTTTAAGCCTCGCTCTGAGTCGGAGTCTGAGTCGACTGCCGTACTGCCTGATGTGGCCATCTACACCGTTGTCATTTGGGCCTGCATCTCTGCCGGCAAGATCATGGCTGCTCACAGGGTCTACCACCACATGATAGCCAACGGTGTCGCCCCCACCTCCTGCACTTACATTATACTCATCAACACACTGGCAACAAATTCATCTTCTGATGTCAATTTTGTTGGGTATGCCAAGAAGTATTTTTTGGAAATGTTGGATAAGGGGATGATGCCTATTTCGTCCTCCTACATGGCCGTCTTCAAAGCCATTGCTTGCCAGGAGCCGGTGGAGAAGGCCAGGGAGTTCCTTGAGCAGATACAAACAAAGGGGTTCAGCCCTAAGCTGGATGTTCCTCACTTTGATGTGGCCTACATGGAAGAAGCAATGAATGCGTTGAAGATGTCTGATGTTCTTATCAACGCCACCACTGACAAGAAGTTGCAAAAACTCTACCGTGAGTGGAGCACCACCCGCAAACCCCTCAGGGATGAGTTTCCGAAGATGTACAAAGCCTTGAAAGCCGATGGCAATGACGACCAGGCCATGGAGCTCTATAGGCGCGCTTGGGATACAAACATAATTCCAGAGGTCGTACTTCACACCGGTGTTATTGAAGACTGTCTCAAGGCTGGCAATACCGAGTGTGCTCTGAAGGCTTACCGGACCATGTTAGCTACTGGGGTTGCCCCAAACTCCTATACATACACTGTTTTAATCAAGGGACTCACTGCTGACCCCCACTTCGTTGAAGATGCCAAGAAGTGCTTGCTTGAGATGATGGACAAGGGAATGCGGCCCAATGCTGCTACCTACGCTGCAGTCATAGAAGGGTTTGCAAGGCAAGAGGACAAGGAAGCTGAGGAGGAAGGTAAACAGTTGGTGGAGGTCATGATGGGTAAGGGGTTTGAGCCAAATGTAAAGGCTATGATGGAGGTTTTAAAGGGAAGACCAAAAGGTATTATAAGAAGGGTCATCAGCATTGTTCTTTCCAAGTTGAAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

418

Amino Acids

47.06

Weight (kDa)

6.25

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 85 - 134 5.9e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 87 - 135 4.5e-11 PPR repeat family
PPR_2 PF13041 279 - 326 3.1e-09 PPR repeat family
PPR_long PF17177 287 - 392 5.2e-07 Pentacotripeptide-repeat region of PRORP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1214
AccB7I CCANNNNNTGG 1 cut(s) 796
AccI GTMKAC 2 cut(s) 245, 333
AccII CGCG 1 cut(s) 813
AciI CCGC 4 cut(s) 5, 35, 724, 1045
AcoI YGGCCR 2 cut(s) 267, 504
AcsI RAATTY 1 cut(s) 409
AcuI CTGAAG 1 cut(s) 923
AfaI GTAC 3 cut(s) 255, 758, 846
AfiI CCNNNNNNNGG 3 cut(s) 535, 595, 796
AflIII ACRYGT 1 cut(s) 52
AgeI ACCGGT 1 cut(s) 854
AgsI TTSAA 8 cut(s) 70, 169, 514, 649, 769, 866, 1001, 1249
AjnI CCWGG 3 cut(s) 528, 548, 789
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AleI CACNNNNGTG 1 cut(s) 855
AluBI AGCT 6 cut(s) 203, 211, 595, 802, 926, 1109
AluI AGCT 6 cut(s) 203, 211, 595, 802, 926, 1109
Alw21I GWGCWC 4 cut(s) 213, 719, 804, 901
Alw26I GTCTC 1 cut(s) 878
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 8 cut(s) 75, 267, 291, 504, 546, 618, 792, 1046
ApeKI GCWGC 3 cut(s) 320, 1055, 1067
ApoI RAATTY 1 cut(s) 409
ArsI GACNNNNNNTTYG 2 cut(s) 977, 1009
AsiGI ACCGGT 1 cut(s) 854
Asp700I GAANNNNTTC 1 cut(s) 65
AspLEI GCGC 2 cut(s) 813, 815
AspS9I GGNCC 3 cut(s) 291, 915, 1047
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 44
AvaII GGWCC 1 cut(s) 915
AxyI CCTNAGG 1 cut(s) 734
BalI TGGCCA 1 cut(s) 269
BanII GRGCYC 2 cut(s) 213, 804
BbsI GAAGAC 3 cut(s) 502, 873, 1204
Bbv12I GWGCWC 4 cut(s) 213, 719, 804, 901
BbvCI CCTCAGC 1 cut(s) 1110
BbvI GCAGC 3 cut(s) 307, 1042, 1054
BccI CCATC 5 cut(s) 278, 770, 1024, 1138, 1174
BceAI ACGGC 2 cut(s) 236, 491
BciT130I CCWGG 3 cut(s) 530, 550, 791
BciVI GTATCC 1 cut(s) 814
BcoDI GTCTC 1 cut(s) 878
BfaI CTAG 1 cut(s) 204
BfmI CTRYAG 2 cut(s) 805, 1068
BfuI GTATCC 1 cut(s) 814
BisI GCNGC 4 cut(s) 321, 1046, 1056, 1068
BlsI GCNGC 4 cut(s) 322, 1047, 1057, 1069
Bme1390I CCNGG 3 cut(s) 530, 550, 791
Bme18I GGWCC 1 cut(s) 915
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 3 cut(s) 291, 915, 1047
BmiI GGNNCC 1 cut(s) 534
BmrFI CCNGG 3 cut(s) 530, 550, 791
BmrI ACTGGG 1 cut(s) 939
BmsI GCATC 3 cut(s) 306, 471, 994
BmuI ACTGGG 1 cut(s) 939
BpiI GAAGAC 3 cut(s) 502, 873, 1204
Bpu10I CCTNAGC 2 cut(s) 591, 1110
BpuEI CTTGAG 3 cut(s) 581, 860, 1043
BsaJI CCNNGG 3 cut(s) 174, 549, 795
BsaWI WCCGGW 2 cut(s) 854, 912
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 3 cut(s) 535, 595, 796
Bse118I RCCGGY 3 cut(s) 305, 535, 854
Bse1I ACTGG 2 cut(s) 405, 934
Bse21I CCTNAGG 1 cut(s) 734
Bse3DI GCAATG 3 cut(s) 519, 642, 787
BseBI CCWGG 3 cut(s) 530, 550, 791
BseDI CCNNGG 3 cut(s) 174, 549, 795
BseGI GGATG 4 cut(s) 43, 483, 604, 745
BseLI CCNNNNNNNGG 3 cut(s) 535, 595, 796
BseMI GCAATG 3 cut(s) 519, 642, 787
BseMII CTCAG 4 cut(s) 219, 231, 748, 1101
BseNI ACTGG 2 cut(s) 405, 934
BsePI GCGCGC 1 cut(s) 811
BseRI GAGGAG 1 cut(s) 1127
BseXI GCAGC 3 cut(s) 307, 1042, 1054
BsgI GTGCAG 1 cut(s) 358
Bsh1236I CGCG 1 cut(s) 813
BshFI GGCC 8 cut(s) 77, 269, 293, 506, 548, 620, 794, 1048
BshTI ACCGGT 1 cut(s) 854
BsiHKAI GWGCWC 4 cut(s) 213, 719, 804, 901
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 4 cut(s) 306, 536, 855, 913
BslFI GGGAC 1 cut(s) 987
BslI CCNNNNNNNGG 3 cut(s) 535, 595, 796
BsmAI GTCTC 1 cut(s) 878
BsmFI GGGAC 1 cut(s) 987
BsmI GAATGC 2 cut(s) 646, 1047
BsnI GGCC 8 cut(s) 77, 269, 293, 506, 548, 620, 794, 1048
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 4 cut(s) 213, 719, 804, 901
Bsp1407I TGTACA 1 cut(s) 756
Bsp143I GATC 1 cut(s) 312
Bsp19I CCATGG 2 cut(s) 174, 795
BspACI CCGC 4 cut(s) 5, 35, 724, 1045
BspANI GGCC 8 cut(s) 77, 269, 293, 506, 548, 620, 794, 1048
BspCNI CTCAG 4 cut(s) 220, 232, 747, 1102
BspFNI CGCG 1 cut(s) 813
BspHI TCATGA 1 cut(s) 1140
BspLI GGNNCC 1 cut(s) 534
BspMAI CTGCAG 1 cut(s) 1072
BsrDI GCAATG 3 cut(s) 519, 642, 787
BsrFI RCCGGY 3 cut(s) 305, 535, 854
BsrGI TGTACA 1 cut(s) 756
BsrI ACTGG 2 cut(s) 405, 934
BssAI RCCGGY 3 cut(s) 305, 535, 854
BssECI CCNNGG 3 cut(s) 174, 549, 795
BssHII GCGCGC 1 cut(s) 811
BssMI GATC 1 cut(s) 312
BssT1I CCWWGG 2 cut(s) 174, 795
Bst2UI CCWGG 3 cut(s) 530, 550, 791
Bst4CI ACNGT 7 cut(s) 89, 280, 356, 707, 872, 961, 1128
BstAPI GCANNNNNTGC 1 cut(s) 641
BstAUI TGTACA 1 cut(s) 756
BstC8I GCNNGC 6 cut(s) 295, 307, 526, 813, 883, 1019
BstDEI CTNAG 6 cut(s) 12, 228, 240, 591, 734, 1110
BstDSI CCRYGG 2 cut(s) 174, 795
BstF5I GGATG 4 cut(s) 43, 483, 604, 745
BstFNI CGCG 1 cut(s) 813
BstHHI GCGC 2 cut(s) 813, 815
BstKTI GATC 1 cut(s) 315
BstMAI GTCTC 1 cut(s) 878
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 7 cut(s) 217, 641, 723, 770, 808, 905, 1064
BstNI CCWGG 3 cut(s) 530, 550, 791
BstNSI RCATGY 1 cut(s) 56
BstSCI CCNGG 3 cut(s) 528, 548, 789
BstSFI CTRYAG 2 cut(s) 805, 1068
BstUI CGCG 1 cut(s) 813
BstV1I GCAGC 3 cut(s) 307, 1042, 1054
BstV2I GAAGAC 3 cut(s) 502, 873, 1204
Bsu36I CCTNAGG 1 cut(s) 734
BsuI GTATCC 1 cut(s) 814
BsuRI GGCC 8 cut(s) 77, 269, 293, 506, 548, 620, 794, 1048
BtgI CCRYGG 2 cut(s) 174, 795
BtsCI GGATG 4 cut(s) 43, 483, 604, 745
BtsI GCAGTG 1 cut(s) 978
BtsIMutI CAGTG 4 cut(s) 398, 678, 957, 978
Cac8I GCNNGC 6 cut(s) 295, 307, 526, 813, 883, 1019
CciI TCATGA 1 cut(s) 1140
CfoI GCGC 2 cut(s) 813, 815
Cfr10I RCCGGY 3 cut(s) 305, 535, 854
Cfr13I GGNCC 3 cut(s) 291, 915, 1047
Csp6I GTAC 3 cut(s) 254, 757, 845
CspAI ACCGGT 1 cut(s) 854
CviQI GTAC 3 cut(s) 254, 757, 845
DdeI CTNAG 6 cut(s) 12, 228, 240, 591, 734, 1110
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
DraI TTTAAA 1 cut(s) 1191
EaeI YGGCCR 2 cut(s) 267, 504
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 2 cut(s) 211, 802
Eco130I CCWWGG 2 cut(s) 174, 795
Eco24I GRGCYC 2 cut(s) 213, 804
Eco47I GGWCC 1 cut(s) 915
Eco53kI GAGCTC 2 cut(s) 211, 802
Eco57I CTGAAG 1 cut(s) 923
Eco81I CCTNAGG 1 cut(s) 734
Eco88I CYCGRG 1 cut(s) 44
EcoICRI GAGCTC 2 cut(s) 211, 802
EcoRII CCWGG 3 cut(s) 528, 548, 789
EcoT14I CCWWGG 2 cut(s) 174, 795
EcoT38I GRGCYC 2 cut(s) 213, 804
ErhI CCWWGG 2 cut(s) 174, 795
FalI AAGNNNNNCTT 2 cut(s) 1001, 1033
FaqI GGGAC 1 cut(s) 987
FauI CCCGC 1 cut(s) 731
FblI GTMKAC 2 cut(s) 245, 333
Fnu4HI GCNGC 4 cut(s) 321, 1046, 1056, 1068
FokI GGATG 4 cut(s) 50, 490, 611, 752
FriOI GRGCYC 2 cut(s) 213, 804
Fsp4HI GCNGC 4 cut(s) 321, 1046, 1056, 1068
FspBI CTAG 1 cut(s) 204
GlaI GCGC 2 cut(s) 812, 814
GluI GCNGC 4 cut(s) 321, 1046, 1056, 1068
HaeIII GGCC 8 cut(s) 77, 269, 293, 506, 548, 620, 794, 1048
HapII CCGG 4 cut(s) 306, 536, 855, 913
HhaI GCGC 2 cut(s) 813, 815
Hin6I GCGC 2 cut(s) 811, 813
HinP1I GCGC 2 cut(s) 811, 813
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HinfI GANTC 5 cut(s) 8, 230, 236, 242, 975
HpaII CCGG 4 cut(s) 306, 536, 855, 913
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 3 cut(s) 246, 334, 1124
Hpy188I TCNGA 7 cut(s) 229, 235, 241, 421, 658, 750, 903
Hpy188III TCNNGA 3 cut(s) 46, 836, 1141
Hpy8I GTNNAC 3 cut(s) 246, 334, 1124
HpyAV CCTTC 7 cut(s) 55, 538, 898, 1073, 1112, 1212, 1243
HpyCH4III ACNGT 7 cut(s) 89, 280, 356, 707, 872, 961, 1128
HpyCH4V TGCA 6 cut(s) 155, 297, 375, 694, 1070, 1088
HpyF10VI GCNNNNNNNGC 7 cut(s) 217, 641, 723, 770, 808, 905, 1064
HpyF3I CTNAG 6 cut(s) 12, 228, 240, 591, 734, 1110
HspAI GCGC 2 cut(s) 811, 813
KroI GCCGGC 1 cut(s) 305
KroNI GCCGGC 1 cut(s) 307
Kzo9I GATC 1 cut(s) 312
LmnI GCTCC 3 cut(s) 532, 714, 799
Lsp1109I GCAGC 3 cut(s) 307, 1042, 1054
LweI GCATC 3 cut(s) 306, 471, 994
MaeI CTAG 1 cut(s) 204
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 8 cut(s) 408, 502, 641, 661, 763, 878, 1013, 1209
MhlI GDGCHC 4 cut(s) 213, 719, 804, 901
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 6 cut(s) 25, 156, 169, 409, 427, 831
MluNI TGGCCA 1 cut(s) 269
MlyI GAGTC 5 cut(s) 17, 239, 245, 251, 969
MmeI TCCRAC 2 cut(s) 213, 447
Mox20I TGGCCA 1 cut(s) 269
MroNI GCCGGC 1 cut(s) 305
MroXI GAANNNNTTC 1 cut(s) 65
MscI TGGCCA 1 cut(s) 269
MseI TTAA 4 cut(s) 144, 216, 965, 1190
MslI CAYNNNNRTG 2 cut(s) 612, 855
Msp20I TGGCCA 1 cut(s) 269
MspI CCGG 4 cut(s) 306, 536, 855, 913
MspR9I CCNGG 3 cut(s) 530, 550, 791
Mva1269I GAATGC 2 cut(s) 646, 1047
MvaI CCWGG 3 cut(s) 530, 550, 791
MvnI CGCG 1 cut(s) 813
MwoI GCNNNNNNNGC 7 cut(s) 217, 641, 723, 770, 808, 905, 1064
NaeI GCCGGC 1 cut(s) 307
NcoI CCATGG 2 cut(s) 174, 795
NdeII GATC 1 cut(s) 312
NgoMIV GCCGGC 1 cut(s) 305
NlaIV GGNNCC 1 cut(s) 534
NspI RCATGY 1 cut(s) 56
OliI CACNNNNGTG 1 cut(s) 855
PaeR7I CTCGAG 1 cut(s) 44
PagI TCATGA 1 cut(s) 1140
PauI GCGCGC 1 cut(s) 811
PciI ACATGT 1 cut(s) 52
PctI GAATGC 2 cut(s) 646, 1047
PdiI GCCGGC 1 cut(s) 307
PdmI GAANNNNTTC 1 cut(s) 65
PflMI CCANNNNNTGG 1 cut(s) 796
PinAI ACCGGT 1 cut(s) 854
PkrI GCNGC 4 cut(s) 322, 1047, 1057, 1069
PleI GAGTC 5 cut(s) 16, 238, 244, 250, 969
PpsI GAGTC 5 cut(s) 16, 238, 244, 250, 969
PscI ACATGT 1 cut(s) 52
PsiI TTATAA 1 cut(s) 1214
Psp124BI GAGCTC 2 cut(s) 213, 804
Psp6I CCWGG 3 cut(s) 528, 548, 789
PspGI CCWGG 3 cut(s) 528, 548, 789
PspN4I GGNNCC 1 cut(s) 534
PspPI GGNCC 3 cut(s) 291, 915, 1047
PstI CTGCAG 1 cut(s) 1072
PteI GCGCGC 1 cut(s) 811
RsaI GTAC 3 cut(s) 255, 758, 846
RsaNI GTAC 3 cut(s) 254, 757, 845
RseI CAYNNNNRTG 2 cut(s) 612, 855
SacI GAGCTC 2 cut(s) 213, 804
SalI GTCGAC 1 cut(s) 244
SaqAI TTAA 4 cut(s) 144, 216, 965, 1190
SatI GCNGC 4 cut(s) 321, 1046, 1056, 1068
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 3 cut(s) 291, 915, 1047
SchI GAGTC 5 cut(s) 17, 239, 245, 251, 969
ScrFI CCNGG 3 cut(s) 530, 550, 791
SduI GDGCHC 4 cut(s) 213, 719, 804, 901
SfaNI GCATC 3 cut(s) 306, 471, 994
SfcI CTRYAG 2 cut(s) 805, 1068
Sfr274I CTCGAG 1 cut(s) 44
SgrAI CRCCGGYG 1 cut(s) 854
SinI GGWCC 1 cut(s) 915
SlaI CTCGAG 1 cut(s) 44
SmiMI CAYNNNNRTG 2 cut(s) 612, 855
SmlI CTYRAG 4 cut(s) 44, 560, 875, 1022
SmoI CTYRAG 4 cut(s) 44, 560, 875, 1022
Sse9I AATT 6 cut(s) 25, 156, 169, 409, 427, 831
SsiI CCGC 4 cut(s) 5, 35, 724, 1045
SspI AATATT 1 cut(s) 114
SspMI CTAG 1 cut(s) 204
SstI GAGCTC 2 cut(s) 213, 804
StyD4I CCNGG 3 cut(s) 528, 548, 789
StyI CCWWGG 2 cut(s) 174, 795
TaaI ACNGT 7 cut(s) 89, 280, 356, 707, 872, 961, 1128
TaqI TCGA 2 cut(s) 45, 245
TasI AATT 6 cut(s) 25, 156, 169, 409, 427, 831
TatI WGTACW 1 cut(s) 756
TauI GCSGC 1 cut(s) 1048
Tru1I TTAA 4 cut(s) 144, 216, 965, 1190
Tru9I TTAA 4 cut(s) 144, 216, 965, 1190
TscAI CASTG 4 cut(s) 405, 685, 964, 985
TseI GCWGC 3 cut(s) 320, 1055, 1067
TspDTI ATGAA 3 cut(s) 74, 402, 653
TspRI CASTG 4 cut(s) 405, 685, 964, 985
Van91I CCANNNNNTGG 1 cut(s) 796
VpaK11BI GGWCC 1 cut(s) 915
XapI RAATTY 1 cut(s) 409
XceI RCATGY 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 44
XmiI GTMKAC 2 cut(s) 245, 333
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.