RchiOBHm_Chr7g0235851

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000101
Physical Location & Seq
Forward (+)
60781903 .. 60783021
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21135

Sequence Viewer

Length: 1119 bp
ATGCGATTATCATGTTCAATTCCATGGCAAATCACGGCATGGTTCACCAAGCCAGAGAGCTCTTTAAGCCTGTCACTGAGCCGGCCACACAGCCGGAAGTGGTGTACGTATTCACATTGTTATTTTGTGGCCGTATTCACATTTGTTATTTTGCTGTACGCCCATGCCGGCAAGACCAAGGCTGCTCTCAAGGTCTACCACCACATGTTATCCACTGGTGCCACTCCCACCGCCTACACTTACACTGTACTCATCACCGCATATGGAAGAGACTCTTCGGGTTTCAATTTTGTTGGATATGCTAAGAAATTCTTTTTGGAAATGTTGGATAAGGGGATGAAACCCCTCTCTGCAACCTACATGATTGTGTTGGACCTCGTTGCCTACAGAGAACCGGTGGACAAGGCCAAGGAGTTCCTTCAGCAGATAGAAGCTAAGGGTTGGTTAAGCCCCGGCTCCAATGCTTATCAATTCAAAGAATGTCACCTCACAGACGCAATGCAGGTAATCAAGATGTATGCTGATCTTGTCAACAACATCGCGGATGAGGATGTGCAAACATTCTTCCGCAAGTCGCGCACCTGCCCAGGTGGTGTCAACAAACGGTTGAGGAAGATGCAGAAGGCTTTGAAAGAGGATGGAAATGTAGACGAGAGCATAGAGATTTTTAGCACCATTCTTCAGACGGGCATGGAGCCCATGGTCCTACTCCACACCTCCGTTATTGAAGCCTACTTAAAGTTTGGCAAGACCAAGGGTGCTCTGGAGGCGTACTGGGGCATGTTAGCTGCTGGGGTGGCCCCCAACTCCTACACTTACACTGTTTTAATCAAGGGACTTACTTCTGACCCCAACTTTTTTGGAGATGCCAAGAAGTGCTTGCTAGAGATGATGGACAAGGGAAAGCGGCCCAATGCTGCTACCTACACTGCAGTGATAGAGGGCTTTGCAAAGCAGGGGGGCAAGGCAGCCGAGGAGGAGGGAAAAGAGTTTGTGGCGGTAATGAGGGATAAGGGGTTCGTGCCTAATGCAAAGGCAATGAGGGATGTTTTAAAGGGCAGACCAACACCCATTATTAGAAGAGTCATGAGTATTGTCCTTTCCACATTGAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

372

Amino Acids

41.64

Weight (kDa)

9.37

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 44 - 88 9e-10 PPR repeat family
TPR_24 PF23276 221 - 321 8.7e-08 Fungal tetratrico peptide repeats
PPR_2 PF13041 239 - 280 3.2e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 590
Acc36I ACCTGC 2 cut(s) 493, 590
AccB1I GGYRCC 1 cut(s) 218
AccI GTMKAC 2 cut(s) 195, 648
AccII CGCG 2 cut(s) 542, 577
AciI CCGC 6 cut(s) 231, 258, 542, 568, 907, 998
AcoI YGGCCR 2 cut(s) 83, 129
AcsI RAATTY 1 cut(s) 308
AcuI CTGAAG 2 cut(s) 404, 665
AfaI GTAC 4 cut(s) 106, 158, 249, 773
AflIII ACRYGT 1 cut(s) 204
AgeI ACCGGT 1 cut(s) 394
AgsI TTSAA 6 cut(s) 18, 286, 475, 631, 728, 1111
AjnI CCWGG 1 cut(s) 586
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AleI CACNNNNGTG 1 cut(s) 932
AloI GAACNNNNNNTCC 2 cut(s) 1001, 1033
AluBI AGCT 3 cut(s) 60, 434, 788
AluI AGCT 3 cut(s) 60, 434, 788
Alw21I GWGCWC 2 cut(s) 62, 763
Alw26I GTCTC 1 cut(s) 264
AoxI GGCC 5 cut(s) 83, 129, 405, 798, 908
ApeKI GCWGC 4 cut(s) 182, 788, 917, 968
ApoI RAATTY 1 cut(s) 308
AsiGI ACCGGT 1 cut(s) 394
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 4 cut(s) 373, 703, 799, 909
AsuC2I CCSGG 1 cut(s) 453
AsuHPI GGTGA 3 cut(s) 37, 247, 476
AvaII GGWCC 2 cut(s) 373, 703
BanI GGYRCC 1 cut(s) 218
BanII GRGCYC 2 cut(s) 62, 699
Bbv12I GWGCWC 2 cut(s) 62, 763
BbvI GCAGC 4 cut(s) 169, 775, 904, 980
BccI CCATC 2 cut(s) 632, 886
BceAI ACGGC 2 cut(s) 51, 116
BciT130I CCWGG 1 cut(s) 588
BcnI CCSGG 1 cut(s) 453
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 1 cut(s) 884
BfmI CTRYAG 2 cut(s) 385, 930
BfuAI ACCTGC 2 cut(s) 493, 590
BisI GCNGC 5 cut(s) 183, 789, 908, 918, 969
BlsI GCNGC 5 cut(s) 184, 790, 909, 919, 970
Bme1390I CCNGG 2 cut(s) 453, 588
Bme18I GGWCC 2 cut(s) 373, 703
BmgT120I GGNCC 4 cut(s) 373, 703, 799, 909
BmiI GGNNCC 4 cut(s) 220, 457, 696, 801
BmrFI CCNGG 2 cut(s) 453, 588
BmrI ACTGGG 1 cut(s) 784
BmsI GCATC 2 cut(s) 606, 856
BmuI ACTGGG 1 cut(s) 784
BpmI CTGGAG 1 cut(s) 785
Bpu10I CCTNAGC 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 453
BsaAI YACGTR 1 cut(s) 108
BsaJI CCNNGG 8 cut(s) 23, 177, 408, 451, 586, 699, 753, 972
BsaWI WCCGGW 1 cut(s) 394
Bse118I RCCGGY 3 cut(s) 81, 167, 394
Bse1I ACTGG 2 cut(s) 220, 779
Bse3DI GCAATG 2 cut(s) 504, 1044
BseBI CCWGG 1 cut(s) 588
BseDI CCNNGG 8 cut(s) 23, 177, 408, 451, 586, 699, 753, 972
BseGI GGATG 5 cut(s) 342, 550, 556, 643, 1051
BseMI GCAATG 2 cut(s) 504, 1044
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 2 cut(s) 220, 779
BseRI GAGGAG 2 cut(s) 989, 992
BseXI GCAGC 4 cut(s) 169, 775, 904, 980
BseYI CCCAGC 1 cut(s) 791
Bsh1236I CGCG 2 cut(s) 542, 577
BshFI GGCC 5 cut(s) 85, 131, 407, 800, 910
BshNI GGYRCC 1 cut(s) 218
BshTI ACCGGT 1 cut(s) 394
BsiHKAI GWGCWC 2 cut(s) 62, 763
BsiSI CCGG 5 cut(s) 82, 94, 168, 395, 453
BslFI GGGAC 1 cut(s) 849
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 849
BsnI GGCC 5 cut(s) 85, 131, 407, 800, 910
Bsp1286I GDGCHC 3 cut(s) 62, 699, 763
Bsp143I GATC 1 cut(s) 523
Bsp19I CCATGG 2 cut(s) 23, 699
BspACI CCGC 6 cut(s) 231, 258, 542, 568, 907, 998
BspANI GGCC 5 cut(s) 85, 131, 407, 800, 910
BspCNI CTCAG 1 cut(s) 69
BspFNI CGCG 2 cut(s) 542, 577
BspHI TCATGA 1 cut(s) 1086
BspLI GGNNCC 4 cut(s) 220, 457, 696, 801
BspMAI CTGCAG 1 cut(s) 934
BspMI ACCTGC 2 cut(s) 493, 590
BspT107I GGYRCC 1 cut(s) 218
BsrDI GCAATG 2 cut(s) 504, 1044
BsrFI RCCGGY 3 cut(s) 81, 167, 394
BsrI ACTGG 2 cut(s) 220, 779
BssAI RCCGGY 3 cut(s) 81, 167, 394
BssECI CCNNGG 8 cut(s) 23, 177, 408, 451, 586, 699, 753, 972
BssMI GATC 1 cut(s) 523
BssT1I CCWWGG 5 cut(s) 23, 177, 408, 699, 753
Bst2UI CCWGG 1 cut(s) 588
Bst4CI ACNGT 3 cut(s) 247, 606, 823
Bst6I CTCTTC 3 cut(s) 262, 280, 1075
BstBAI YACGTR 1 cut(s) 108
BstC8I GCNNGC 3 cut(s) 83, 169, 881
BstDEI CTNAG 3 cut(s) 77, 303, 435
BstDSI CCRYGG 2 cut(s) 23, 699
BstF5I GGATG 5 cut(s) 342, 550, 556, 643, 1051
BstFNI CGCG 2 cut(s) 542, 577
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 1 cut(s) 526
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 1 cut(s) 523
BstMWI GCNNNNNNNGC 4 cut(s) 66, 576, 767, 797
BstNI CCWGG 1 cut(s) 588
BstNSI RCATGY 2 cut(s) 208, 784
BstSCI CCNGG 2 cut(s) 451, 586
BstSFI CTRYAG 2 cut(s) 385, 930
BstSNI TACGTA 1 cut(s) 108
BstUI CGCG 2 cut(s) 542, 577
BstV1I GCAGC 4 cut(s) 169, 775, 904, 980
BsuRI GGCC 5 cut(s) 85, 131, 407, 800, 910
BtgI CCRYGG 2 cut(s) 23, 699
BtgZI GCGATG 1 cut(s) 523
BtsCI GGATG 5 cut(s) 342, 550, 556, 643, 1051
BtsI GCAGTG 2 cut(s) 927, 939
BtsIMutI CAGTG 6 cut(s) 74, 213, 243, 819, 927, 939
BveI ACCTGC 2 cut(s) 493, 590
Cac8I GCNNGC 3 cut(s) 83, 169, 881
CciI TCATGA 1 cut(s) 1086
CfoI GCGC 1 cut(s) 579
Cfr10I RCCGGY 3 cut(s) 81, 167, 394
Cfr13I GGNCC 4 cut(s) 373, 703, 799, 909
CseI GACGC 1 cut(s) 503
Csp6I GTAC 4 cut(s) 105, 157, 248, 772
CspAI ACCGGT 1 cut(s) 394
CviQI GTAC 4 cut(s) 105, 157, 248, 772
DdeI CTNAG 3 cut(s) 77, 303, 435
DpnI GATC 1 cut(s) 525
DpnII GATC 1 cut(s) 523
DraI TTTAAA 1 cut(s) 1053
EaeI YGGCCR 2 cut(s) 83, 129
Eam1104I CTCTTC 3 cut(s) 262, 280, 1075
EarI CTCTTC 3 cut(s) 262, 280, 1075
Ecl136II GAGCTC 1 cut(s) 60
Eco105I TACGTA 1 cut(s) 108
Eco130I CCWWGG 5 cut(s) 23, 177, 408, 699, 753
Eco24I GRGCYC 2 cut(s) 62, 699
Eco47I GGWCC 2 cut(s) 373, 703
Eco53kI GAGCTC 1 cut(s) 60
Eco57I CTGAAG 2 cut(s) 404, 665
EcoICRI GAGCTC 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 586
EcoT14I CCWWGG 5 cut(s) 23, 177, 408, 699, 753
EcoT38I GRGCYC 2 cut(s) 62, 699
ErhI CCWWGG 5 cut(s) 23, 177, 408, 699, 753
FalI AAGNNNNNCTT 6 cut(s) 259, 291, 296, 328, 863, 895
FaqI GGGAC 1 cut(s) 849
FauNDI CATATG 1 cut(s) 262
FblI GTMKAC 2 cut(s) 195, 648
Fnu4HI GCNGC 5 cut(s) 183, 789, 908, 918, 969
FokI GGATG 5 cut(s) 349, 557, 563, 650, 1058
FriOI GRGCYC 2 cut(s) 62, 699
Fsp4HI GCNGC 5 cut(s) 183, 789, 908, 918, 969
FspBI CTAG 1 cut(s) 884
GlaI GCGC 1 cut(s) 578
GluI GCNGC 5 cut(s) 183, 789, 908, 918, 969
GsaI CCCAGC 1 cut(s) 795
GsuI CTGGAG 1 cut(s) 785
HaeIII GGCC 5 cut(s) 85, 131, 407, 800, 910
HapII CCGG 5 cut(s) 82, 94, 168, 395, 453
HgaI GACGC 1 cut(s) 503
HhaI GCGC 1 cut(s) 579
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HincII GTYRAC 2 cut(s) 532, 598
HindII GTYRAC 2 cut(s) 532, 598
HinfI GANTC 2 cut(s) 272, 1083
HpaII CCGG 5 cut(s) 82, 94, 168, 395, 453
HphI GGTGA 3 cut(s) 37, 247, 476
Hpy166II GTNNAC 7 cut(s) 45, 105, 196, 400, 532, 598, 649
Hpy188I TCNGA 2 cut(s) 684, 847
Hpy188III TCNNGA 3 cut(s) 511, 764, 1087
Hpy8I GTNNAC 7 cut(s) 45, 105, 196, 400, 532, 598, 649
HpyAV CCTTC 2 cut(s) 428, 616
HpyCH4III ACNGT 3 cut(s) 247, 606, 823
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 7 cut(s) 353, 502, 556, 619, 932, 950, 1031
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 576, 767, 797
HpyF3I CTNAG 3 cut(s) 77, 303, 435
HpySE526I ACGT 1 cut(s) 107
HspAI GCGC 1 cut(s) 577
KroI GCCGGC 2 cut(s) 81, 167
KroNI GCCGGC 2 cut(s) 83, 169
Kzo9I GATC 1 cut(s) 523
LmnI GCTCC 2 cut(s) 461, 694
Lsp1109I GCAGC 4 cut(s) 169, 775, 904, 980
LweI GCATC 2 cut(s) 606, 856
MaeI CTAG 1 cut(s) 884
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 2 cut(s) 72, 482
MalI GATC 1 cut(s) 525
MboI GATC 1 cut(s) 523
MboII GAAGA 6 cut(s) 267, 279, 556, 625, 671, 1092
MhlI GDGCHC 3 cut(s) 62, 699, 763
MluCI AATT 4 cut(s) 18, 286, 308, 470
MlyI GAGTC 2 cut(s) 266, 1092
MmeI TCCRAC 3 cut(s) 274, 306, 351
MroNI GCCGGC 2 cut(s) 81, 167
MseI TTAA 5 cut(s) 65, 446, 737, 827, 1052
MslI CAYNNNNRTG 2 cut(s) 365, 932
MspI CCGG 5 cut(s) 82, 94, 168, 395, 453
MspR9I CCNGG 2 cut(s) 453, 588
MvaI CCWGG 1 cut(s) 588
MvnI CGCG 2 cut(s) 542, 577
MwoI GCNNNNNNNGC 4 cut(s) 66, 576, 767, 797
NaeI GCCGGC 2 cut(s) 83, 169
NciI CCSGG 1 cut(s) 453
NcoI CCATGG 2 cut(s) 23, 699
NdeI CATATG 1 cut(s) 262
NdeII GATC 1 cut(s) 523
NgoMIV GCCGGC 2 cut(s) 81, 167
NlaIV GGNNCC 4 cut(s) 220, 457, 696, 801
NmeAIII GCCGAG 1 cut(s) 997
NmuCI GTSAC 2 cut(s) 72, 482
NspI RCATGY 2 cut(s) 208, 784
OliI CACNNNNGTG 1 cut(s) 932
PagI TCATGA 1 cut(s) 1086
PaqCI CACCTGC 1 cut(s) 590
PciI ACATGT 1 cut(s) 204
PdiI GCCGGC 2 cut(s) 83, 169
PinAI ACCGGT 1 cut(s) 394
PkrI GCNGC 5 cut(s) 184, 790, 909, 919, 970
PleI GAGTC 2 cut(s) 266, 1091
PpsI GAGTC 2 cut(s) 266, 1091
Ppu21I YACGTR 1 cut(s) 108
PscI ACATGT 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 586
PspFI CCCAGC 1 cut(s) 791
PspGI CCWGG 1 cut(s) 586
PspN4I GGNNCC 4 cut(s) 220, 457, 696, 801
PspPI GGNCC 4 cut(s) 373, 703, 799, 909
PstI CTGCAG 1 cut(s) 934
RsaI GTAC 4 cut(s) 106, 158, 249, 773
RsaNI GTAC 4 cut(s) 105, 157, 248, 772
RseI CAYNNNNRTG 2 cut(s) 365, 932
SacI GAGCTC 1 cut(s) 62
SaqAI TTAA 5 cut(s) 65, 446, 737, 827, 1052
SatI GCNGC 5 cut(s) 183, 789, 908, 918, 969
Sau3AI GATC 1 cut(s) 523
Sau96I GGNCC 4 cut(s) 373, 703, 799, 909
SchI GAGTC 2 cut(s) 266, 1092
ScrFI CCNGG 2 cut(s) 453, 588
SduI GDGCHC 3 cut(s) 62, 699, 763
SfaNI GCATC 2 cut(s) 606, 856
SfcI CTRYAG 2 cut(s) 385, 930
SinI GGWCC 2 cut(s) 373, 703
SmiMI CAYNNNNRTG 2 cut(s) 365, 932
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
SnaBI TACGTA 1 cut(s) 108
Sse9I AATT 4 cut(s) 18, 286, 308, 470
SsiI CCGC 6 cut(s) 231, 258, 542, 568, 907, 998
SspMI CTAG 1 cut(s) 884
SstI GAGCTC 1 cut(s) 62
StyD4I CCNGG 2 cut(s) 451, 586
StyI CCWWGG 5 cut(s) 23, 177, 408, 699, 753
TaaI ACNGT 3 cut(s) 247, 606, 823
TaiI ACGT 1 cut(s) 110
TasI AATT 4 cut(s) 18, 286, 308, 470
TatI WGTACW 1 cut(s) 247
TauI GCSGC 1 cut(s) 910
Tru1I TTAA 5 cut(s) 65, 446, 737, 827, 1052
Tru9I TTAA 5 cut(s) 65, 446, 737, 827, 1052
TscAI CASTG 6 cut(s) 81, 220, 250, 826, 934, 939
TseFI GTSAC 2 cut(s) 72, 482
TseI GCWGC 4 cut(s) 182, 788, 917, 968
Tsp45I GTSAC 2 cut(s) 72, 482
TspDTI ATGAA 1 cut(s) 353
TspGWI ACGGA 1 cut(s) 709
TspRI CASTG 6 cut(s) 81, 220, 250, 826, 934, 939
VpaK11BI GGWCC 2 cut(s) 373, 703
XapI RAATTY 1 cut(s) 308
XceI RCATGY 2 cut(s) 208, 784
XcmI CCANNNNNNNNNTGG 1 cut(s) 760
XmiI GTMKAC 2 cut(s) 195, 648
XspI CTAG 1 cut(s) 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.