Rroxscaffold_3G00225470

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000101
Physical Location & Seq
Reverse (-)
8703189 .. 8704205
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225470.1

Sequence Viewer

Length: 1017 bp
ATGGGGGACACCGAGGTAAAGTCCACAATTGGGGCTTCTGCTGATGACCTCAACAAACATGTAATGGAGGTTTTTGGGGAGGCCACCAAAGACTCTGAGGATTTTGTTTTGCCACTAAAATTTTCCATGATTCGCAACTATGATGACCTTAACAAATATGCTATTCAAATATTCGATTTTATGGCAAACGAGGACCTCCTGGACGAAGCCAAAAAGCTCTTTAAGCCTCTCTCCGACCAGGGCATACTGCCAGACGTGGCTGTCCTCACCATTGTCATCGGGGAATATGCCATTGCTGGCGAGATCAAGGCTGCTCTCAAGGTCTACCAGCGCATGCTAGCCACCGGTGTCTCCCCCACCTCCCACACTTACACTCTACTCATCATGGCCCTTGTAACAGACTCTTCTGATGTCAATTATGTTGGCCTTGCCAAGAAGTATTTTATGGAAATGTTGGATAAGGGATTGAAGCCCCATGATGTGTCCTATATCTCTGTCTTTGATGCCATTGCCCGCCGGGAGTCAATGGAGAAGGCCAGGGAGTTCCTTGAGCAGATAAAAGCAAAGGGGTTCAGCCTTGAGTCCAATGTTTTCTACTTTGATGAAGCCCACCTCACAGAGGCGATGAAGATAACAAAGTTGCTCCATGATCTCGCCAACAACACGACTGACAAGGATATAAAAAAGCTCTTCCGCAAGTGGTGCACCAGTGGACATGGCTTCCAGAAAGAGTCAATGAAGATGTACAAGGCTCTGGTGAAGGATGGTAATGCAGACGAGGCCATGGAGGTTCTTATGTTGTTCATTAAGGGTATAAAACCAGCCGTCCTAATCCATACCTGCGTTATTGAGACCTACGTCAATGCTGGCAAGATCAAGGGTGCTCTTGAGGCTTACAAGGACATGTTAGCTGCTGGGGTTGCCCCAAACTCCTACACTTACACATTTTTAATCAAGGGACTCACACTGCTGACCCCAACTTCTTTGGAGATGCCAAGAAGTTTTTGCTTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

338

Amino Acids

37.86

Weight (kDa)

5.88

Isoelectric Point (pI)

23.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 84 - 131 1.5e-09 PPR repeat family
PPR_2 PF13041 276 - 321 1.3e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
Acc36I ACCTGC 1 cut(s) 848
AccI GTMKAC 1 cut(s) 324
AciI CCGC 2 cut(s) 514, 694
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 1 cut(s) 746
AfiI CCNNNNNNNGG 2 cut(s) 30, 619
AflIII ACRYGT 2 cut(s) 58, 903
AgeI ACCGGT 1 cut(s) 344
AgsI TTSAA 2 cut(s) 167, 469
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 3 cut(s) 198, 237, 536
AluBI AGCT 3 cut(s) 217, 688, 911
AluI AGCT 3 cut(s) 217, 688, 911
Alw21I GWGCWC 2 cut(s) 707, 886
Alw26I GTCTC 2 cut(s) 355, 845
Alw44I GTGCAC 1 cut(s) 703
AoxI GGCC 5 cut(s) 81, 387, 424, 534, 780
ApaLI GTGCAC 1 cut(s) 703
ApeKI GCWGC 2 cut(s) 311, 911
ApoI RAATTY 1 cut(s) 119
AsiGI ACCGGT 1 cut(s) 344
AspLEI GCGC 1 cut(s) 333
AspS9I GGNCC 2 cut(s) 193, 388
AsuC2I CCSGG 1 cut(s) 518
AsuHPI GGTGA 2 cut(s) 259, 769
AsuNHI GCTAGC 1 cut(s) 337
AvaII GGWCC 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 707
Bbv12I GWGCWC 2 cut(s) 707, 886
BbvI GCAGC 2 cut(s) 298, 898
BccI CCATC 1 cut(s) 758
BceAI ACGGC 1 cut(s) 809
BciT130I CCWGG 3 cut(s) 200, 239, 538
BcnI CCSGG 1 cut(s) 518
BcoDI GTCTC 2 cut(s) 355, 845
BfaI CTAG 1 cut(s) 338
BfuAI ACCTGC 1 cut(s) 848
BisI GCNGC 2 cut(s) 312, 912
BlsI GCNGC 2 cut(s) 313, 913
Bme1390I CCNGG 4 cut(s) 200, 239, 518, 538
Bme18I GGWCC 1 cut(s) 193
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 2 cut(s) 193, 388
BmrFI CCNGG 4 cut(s) 200, 239, 518, 538
BmsI GCATC 2 cut(s) 493, 981
BmtI GCTAGC 1 cut(s) 341
BoxI GACNNNNGTC 1 cut(s) 857
BpuEI CTTGAG 4 cut(s) 302, 569, 599, 908
BpuMI CCSGG 1 cut(s) 518
BsaI GGTCTC 1 cut(s) 845
BsaJI CCNNGG 4 cut(s) 12, 238, 537, 783
BsaWI WCCGGW 1 cut(s) 344
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 619
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 1 cut(s) 708
Bse3DI GCAATG 2 cut(s) 291, 507
BseBI CCWGG 3 cut(s) 200, 239, 538
BseDI CCNNGG 4 cut(s) 12, 238, 537, 783
BseGI GGATG 1 cut(s) 769
BseLI CCNNNNNNNGG 2 cut(s) 30, 619
BseMI GCAATG 2 cut(s) 291, 507
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 708
BseSI GKGCMC 1 cut(s) 707
BseXI GCAGC 2 cut(s) 298, 898
BseYI CCCAGC 1 cut(s) 914
BshFI GGCC 5 cut(s) 83, 389, 426, 536, 782
BshTI ACCGGT 1 cut(s) 344
BsiHKAI GWGCWC 2 cut(s) 707, 886
BsiSI CCGG 2 cut(s) 345, 517
BslFI GGGAC 2 cut(s) 20, 972
BslI CCNNNNNNNGG 2 cut(s) 30, 619
BsmAI GTCTC 2 cut(s) 355, 845
BsmFI GGGAC 2 cut(s) 20, 972
BsnI GGCC 5 cut(s) 83, 389, 426, 536, 782
Bso31I GGTCTC 1 cut(s) 845
Bsp1286I GDGCHC 2 cut(s) 707, 886
Bsp1407I TGTACA 1 cut(s) 744
Bsp143I GATC 3 cut(s) 303, 649, 873
Bsp19I CCATGG 1 cut(s) 783
BspACI CCGC 2 cut(s) 514, 694
BspANI GGCC 5 cut(s) 83, 389, 426, 536, 782
BspCNI CTCAG 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 848
BspOI GCTAGC 1 cut(s) 341
BspQI GCTCTTC 1 cut(s) 695
BspTNI GGTCTC 1 cut(s) 845
BsrDI GCAATG 2 cut(s) 291, 507
BsrFI RCCGGY 1 cut(s) 344
BsrGI TGTACA 1 cut(s) 744
BsrI ACTGG 1 cut(s) 708
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 4 cut(s) 12, 238, 537, 783
BssMI GATC 3 cut(s) 303, 649, 873
BssT1I CCWWGG 1 cut(s) 783
Bst2UI CCWGG 3 cut(s) 200, 239, 538
Bst6I CTCTTC 2 cut(s) 409, 695
BstAPI GCANNNNNTGC 1 cut(s) 702
BstAUI TGTACA 1 cut(s) 744
BstC8I GCNNGC 5 cut(s) 298, 335, 339, 514, 868
BstDEI CTNAG 1 cut(s) 96
BstDSI CCRYGG 1 cut(s) 783
BstENI CCTNNNNNAGG 1 cut(s) 617
BstF5I GGATG 1 cut(s) 769
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 3 cut(s) 306, 652, 876
BstMAI GTCTC 2 cut(s) 355, 845
BstMBI GATC 3 cut(s) 303, 649, 873
BstMWI GCNNNNNNNGC 5 cut(s) 223, 702, 779, 890, 920
BstNI CCWGG 3 cut(s) 200, 239, 538
BstNSI RCATGY 3 cut(s) 62, 337, 907
BstPAI GACNNNNGTC 1 cut(s) 857
BstSCI CCNGG 4 cut(s) 198, 237, 516, 536
BstSLI GKGCMC 1 cut(s) 707
BstV1I GCAGC 2 cut(s) 298, 898
BsuRI GGCC 5 cut(s) 83, 389, 426, 536, 782
BtgI CCRYGG 1 cut(s) 783
BtgZI GCGATG 1 cut(s) 638
BtrI CACGTC 1 cut(s) 256
BtsCI GGATG 1 cut(s) 769
BtsI GCAGTG 1 cut(s) 965
BtsIMutI CAGTG 2 cut(s) 715, 965
BveI ACCTGC 1 cut(s) 848
Cac8I GCNNGC 5 cut(s) 298, 335, 339, 514, 868
CfoI GCGC 1 cut(s) 333
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 2 cut(s) 193, 388
Csp6I GTAC 1 cut(s) 745
CspAI ACCGGT 1 cut(s) 344
CviAII CATG 9 cut(s) 59, 127, 334, 385, 476, 647, 716, 784, 904
CviQI GTAC 1 cut(s) 745
DdeI CTNAG 1 cut(s) 96
DpnI GATC 3 cut(s) 305, 651, 875
DpnII GATC 3 cut(s) 303, 649, 873
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
Eam1104I CTCTTC 2 cut(s) 409, 695
EarI CTCTTC 2 cut(s) 409, 695
Eco130I CCWWGG 1 cut(s) 783
Eco31I GGTCTC 1 cut(s) 845
Eco47I GGWCC 1 cut(s) 193
EcoNI CCTNNNNNAGG 1 cut(s) 617
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 3 cut(s) 198, 237, 536
EcoT14I CCWWGG 1 cut(s) 783
ErhI CCWWGG 1 cut(s) 783
FaeI CATG 9 cut(s) 62, 130, 337, 388, 479, 650, 719, 787, 907
FaqI GGGAC 2 cut(s) 20, 972
FatI CATG 9 cut(s) 58, 126, 333, 384, 475, 646, 715, 783, 903
FauI CCCGC 1 cut(s) 521
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 2 cut(s) 312, 912
FokI GGATG 1 cut(s) 776
Fsp4HI GCNGC 2 cut(s) 312, 912
FspBI CTAG 1 cut(s) 338
GlaI GCGC 1 cut(s) 332
GluI GCNGC 2 cut(s) 312, 912
GsaI CCCAGC 1 cut(s) 918
HaeIII GGCC 5 cut(s) 83, 389, 426, 536, 782
HapII CCGG 2 cut(s) 345, 517
HhaI GCGC 1 cut(s) 333
Hin1II CATG 9 cut(s) 62, 130, 337, 388, 479, 650, 719, 787, 907
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HinfI GANTC 7 cut(s) 92, 130, 401, 521, 581, 731, 960
HpaII CCGG 2 cut(s) 345, 517
HphI GGTGA 2 cut(s) 259, 769
Hpy166II GTNNAC 4 cut(s) 24, 325, 705, 713
Hpy188I TCNGA 3 cut(s) 97, 235, 409
Hpy188III TCNNGA 2 cut(s) 724, 887
Hpy8I GTNNAC 4 cut(s) 24, 325, 705, 713
HpyAV CCTTC 2 cut(s) 526, 754
HpyCH4IV ACGT 2 cut(s) 255, 858
HpyCH4V TGCA 2 cut(s) 705, 773
HpyF10VI GCNNNNNNNGC 5 cut(s) 223, 702, 779, 890, 920
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 2 cut(s) 255, 858
Hsp92II CATG 9 cut(s) 62, 130, 337, 388, 479, 650, 719, 787, 907
HspAI GCGC 1 cut(s) 331
Kzo9I GATC 3 cut(s) 303, 649, 873
LguI GCTCTTC 1 cut(s) 695
LmnI GCTCC 1 cut(s) 648
Lsp1109I GCAGC 2 cut(s) 298, 898
LweI GCATC 2 cut(s) 493, 981
MaeI CTAG 1 cut(s) 338
MaeII ACGT 2 cut(s) 255, 858
MaeIII GTNAC 1 cut(s) 394
MalI GATC 3 cut(s) 305, 651, 875
MboI GATC 3 cut(s) 303, 649, 873
MboII GAAGA 4 cut(s) 396, 640, 682, 751
MfeI CAATTG 1 cut(s) 27
MhlI GDGCHC 2 cut(s) 707, 886
MluCI AATT 3 cut(s) 27, 119, 415
MlyI GAGTC 6 cut(s) 86, 395, 530, 590, 740, 954
MmeI TCCRAC 2 cut(s) 258, 435
MseI TTAA 4 cut(s) 150, 222, 807, 950
MspI CCGG 2 cut(s) 345, 517
MspR9I CCNGG 4 cut(s) 200, 239, 518, 538
MunI CAATTG 1 cut(s) 27
MvaI CCWGG 3 cut(s) 200, 239, 538
MwoI GCNNNNNNNGC 5 cut(s) 223, 702, 779, 890, 920
NciI CCSGG 1 cut(s) 518
NcoI CCATGG 1 cut(s) 783
NdeII GATC 3 cut(s) 303, 649, 873
NheI GCTAGC 1 cut(s) 337
NlaIII CATG 9 cut(s) 62, 130, 337, 388, 479, 650, 719, 787, 907
NspI RCATGY 3 cut(s) 62, 337, 907
PaeI GCATGC 1 cut(s) 337
PciI ACATGT 2 cut(s) 58, 903
PciSI GCTCTTC 1 cut(s) 695
PfeI GAWTC 1 cut(s) 130
PfoI TCCNGGA 1 cut(s) 198
PinAI ACCGGT 1 cut(s) 344
PkrI GCNGC 2 cut(s) 313, 913
PleI GAGTC 6 cut(s) 86, 395, 529, 589, 739, 954
PpsI GAGTC 6 cut(s) 86, 395, 529, 589, 739, 954
PpuMI RGGWCCY 1 cut(s) 193
PscI ACATGT 2 cut(s) 58, 903
PshAI GACNNNNGTC 1 cut(s) 857
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 3 cut(s) 198, 237, 536
PspFI CCCAGC 1 cut(s) 914
PspGI CCWGG 3 cut(s) 198, 237, 536
PspPI GGNCC 2 cut(s) 193, 388
PspPPI RGGWCCY 1 cut(s) 193
RsaI GTAC 1 cut(s) 746
RsaNI GTAC 1 cut(s) 745
SapI GCTCTTC 1 cut(s) 695
SaqAI TTAA 4 cut(s) 150, 222, 807, 950
SatI GCNGC 2 cut(s) 312, 912
Sau3AI GATC 3 cut(s) 303, 649, 873
Sau96I GGNCC 2 cut(s) 193, 388
SchI GAGTC 6 cut(s) 86, 395, 530, 590, 740, 954
ScrFI CCNGG 4 cut(s) 200, 239, 518, 538
SduI GDGCHC 2 cut(s) 707, 886
SfaNI GCATC 2 cut(s) 493, 981
SgrAI CRCCGGYG 1 cut(s) 344
SinI GGWCC 1 cut(s) 193
SmlI CTYRAG 5 cut(s) 317, 548, 578, 887, 1009
SmoI CTYRAG 5 cut(s) 317, 548, 578, 887, 1009
SphI GCATGC 1 cut(s) 337
Sse9I AATT 3 cut(s) 27, 119, 415
SsiI CCGC 2 cut(s) 514, 694
SspI AATATT 1 cut(s) 171
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 4 cut(s) 198, 237, 516, 536
StyI CCWWGG 1 cut(s) 783
TaiI ACGT 2 cut(s) 258, 861
TaqI TCGA 1 cut(s) 174
TasI AATT 3 cut(s) 27, 119, 415
TatI WGTACW 1 cut(s) 744
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 4 cut(s) 150, 222, 807, 950
Tru9I TTAA 4 cut(s) 150, 222, 807, 950
TscAI CASTG 2 cut(s) 715, 972
TseI GCWGC 2 cut(s) 311, 911
TspDTI ATGAA 4 cut(s) 618, 641, 752, 793
TspRI CASTG 2 cut(s) 715, 972
VneI GTGCAC 1 cut(s) 703
VpaK11BI GGWCC 1 cut(s) 193
XagI CCTNNNNNAGG 1 cut(s) 617
XapI RAATTY 1 cut(s) 119
XceI RCATGY 3 cut(s) 62, 337, 907
XmiI GTMKAC 1 cut(s) 324
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.