RchiOBHm_Chr7g0235981

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000101
Physical Location & Seq
Forward (+)
60863509 .. 60864688
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21147

Sequence Viewer

Length: 606 bp
ATGAAGTTGCTTGATGATCTCGTCAACAAGACCACTGACAAGGAGATGCAAAAAGTCTTCCGCAATTGGCACCCCACCCACCTCAAGAAAGAGGCAGCGAAGATGTTTTATGCTTTGATAGCGGATGGCAATGCAACCCTGGTCAGGGAGCTCTGCGAGCAAAATTCTGAGACGGGTATATATCCCACTGTCATGCTTCACACTTTTGTTATTGAAGACTACCTCAAAGCAGGCAAGACTAAGGGTGCTCTGGAGGCGTACAGGGGCATGCTAGCTTCTGGGGTTGCCCCAAACTCCTACACTTACCGAGTTTTAATCAAGGGACTCGCTGCTGACCCCCACTTTGTTGAAGATGCCAAGAAGTGCTTGCTTGAGATGATGGACAAGGGAATGAGGCCCAATGCTGCTACCTACACTGCAGTCATAGAAGGGTTTGCAAGGCAAGAGGACAAGGAAGCCGAGGAGGAGGGTAAACAGTTGGTGGAGGTCATGGTGGGTAAGGGGTTTGAGCCAAATGTAAAGGCTATGATGGAGGTTTTAAAGGGAAGACCAAAAGGTATTATAAGAAGGGTCATCAGCATTGTTCTTTCCAAGTTGAAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

201

Amino Acids

22.51

Weight (kDa)

8.9

Isoelectric Point (pI)

23.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 46 - 152 4.6e-08 Fungal tetratrico peptide repeats
PPR_2 PF13041 63 - 110 4.1e-10 PPR repeat family
PPR_long PF17177 69 - 176 2.2e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 116 - 147 4.6e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 563
AccB1I GGYRCC 1 cut(s) 69
AciI CCGC 2 cut(s) 61, 122
AcsI RAATTY 1 cut(s) 163
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 144, 145
AgsI TTSAA 3 cut(s) 215, 350, 598
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 2 cut(s) 151, 275
AluI AGCT 2 cut(s) 151, 275
Alw21I GWGCWC 2 cut(s) 153, 250
Alw26I GTCTC 1 cut(s) 164
AoxI GGCC 1 cut(s) 395
ApeKI GCWGC 3 cut(s) 95, 329, 404
ApoI RAATTY 1 cut(s) 163
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspS9I GGNCC 1 cut(s) 396
AsuNHI GCTAGC 1 cut(s) 271
BanI GGYRCC 1 cut(s) 69
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 3 cut(s) 49, 222, 553
Bbv12I GWGCWC 2 cut(s) 153, 250
BbvI GCAGC 3 cut(s) 107, 316, 391
BccI CCATC 3 cut(s) 119, 373, 523
BciT130I CCWGG 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 272
BfmI CTRYAG 1 cut(s) 417
BisI GCNGC 3 cut(s) 96, 330, 405
BlsI GCNGC 3 cut(s) 97, 331, 406
Bme1390I CCNGG 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 2 cut(s) 36, 343
BmtI GCTAGC 1 cut(s) 275
BpiI GAAGAC 3 cut(s) 49, 222, 553
BpmI CTGGAG 1 cut(s) 272
BpuEI CTTGAG 2 cut(s) 68, 392
BsaJI CCNNGG 2 cut(s) 138, 459
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 145
Bse3DI GCAATG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 138, 459
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 2 cut(s) 144, 145
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 159
BseRI GAGGAG 2 cut(s) 476, 479
BseXI GCAGC 3 cut(s) 107, 316, 391
BshFI GGCC 1 cut(s) 397
BshNI GGYRCC 1 cut(s) 69
BsiHKAI GWGCWC 2 cut(s) 153, 250
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 2 cut(s) 144, 145
BsmAI GTCTC 1 cut(s) 164
BsmBI CGTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 1 cut(s) 397
Bsp1286I GDGCHC 2 cut(s) 153, 250
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 2 cut(s) 61, 122
BspANI GGCC 1 cut(s) 397
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 71
BspMAI CTGCAG 1 cut(s) 421
BspOI GCTAGC 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 136
BssECI CCNNGG 2 cut(s) 138, 459
BssMI GATC 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 2 cut(s) 190, 477
BstC8I GCNNGC 5 cut(s) 158, 232, 269, 273, 368
BstDEI CTNAG 2 cut(s) 168, 240
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 3 cut(s) 119, 157, 254
BstNI CCWGG 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 417
BstV1I GCAGC 3 cut(s) 107, 316, 391
BstV2I GAAGAC 3 cut(s) 49, 222, 553
BsuRI GGCC 1 cut(s) 397
BtsCI GGATG 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 3 cut(s) 33, 186, 414
Cac8I GCNNGC 5 cut(s) 158, 232, 269, 273, 368
Cfr13I GGNCC 1 cut(s) 396
Csp6I GTAC 1 cut(s) 259
CviAII CATG 3 cut(s) 193, 268, 490
CviJI RGCY 7 cut(s) 151, 275, 397, 458, 511, 524, 603
CviKI_1 RGCY 7 cut(s) 151, 275, 397, 458, 511, 524, 603
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 2 cut(s) 168, 240
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
DraI TTTAAA 1 cut(s) 540
Ecl136II GAGCTC 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 153
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 3 cut(s) 196, 271, 493
FaiI YATR 9 cut(s) 111, 179, 181, 194, 269, 425, 491, 527, 563
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 1 cut(s) 336
FatI CATG 3 cut(s) 192, 267, 489
Fnu4HI GCNGC 3 cut(s) 96, 330, 405
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 3 cut(s) 96, 330, 405
FspBI CTAG 1 cut(s) 272
GluI GCNGC 3 cut(s) 96, 330, 405
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 1 cut(s) 397
Hin1II CATG 3 cut(s) 196, 271, 493
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 1 cut(s) 324
Hpy166II GTNNAC 2 cut(s) 25, 473
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 85, 251
Hpy8I GTNNAC 2 cut(s) 25, 473
HpyAV CCTTC 3 cut(s) 422, 561, 592
HpyCH4III ACNGT 2 cut(s) 190, 477
HpyCH4V TGCA 4 cut(s) 49, 134, 419, 437
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 157, 254
HpyF3I CTNAG 2 cut(s) 168, 240
Hsp92II CATG 3 cut(s) 196, 271, 493
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 7 cut(s) 125, 130, 152, 216, 236, 247, 264
Lsp1109I GCAGC 3 cut(s) 107, 316, 391
LweI GCATC 2 cut(s) 36, 343
MaeI CTAG 1 cut(s) 272
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 5 cut(s) 49, 112, 227, 362, 558
MfeI CAATTG 1 cut(s) 64
MhlI GDGCHC 2 cut(s) 153, 250
MluCI AATT 2 cut(s) 64, 163
MlyI GAGTC 1 cut(s) 318
MseI TTAA 2 cut(s) 314, 539
MslI CAYNNNNRTG 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 140
MunI CAATTG 1 cut(s) 64
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 3 cut(s) 119, 157, 254
NdeII GATC 1 cut(s) 16
NheI GCTAGC 1 cut(s) 271
NlaIII CATG 3 cut(s) 196, 271, 493
NlaIV GGNNCC 1 cut(s) 71
NmeAIII GCCGAG 1 cut(s) 484
NspI RCATGY 1 cut(s) 271
PaeI GCATGC 1 cut(s) 271
PkrI GCNGC 3 cut(s) 97, 331, 406
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
PsiI TTATAA 1 cut(s) 563
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 71
PspPI GGNCC 1 cut(s) 396
PstI CTGCAG 1 cut(s) 421
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 191
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 2 cut(s) 314, 539
SatI GCNGC 3 cut(s) 96, 330, 405
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 396
SchI GAGTC 1 cut(s) 318
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 2 cut(s) 153, 250
SetI ASST 8 cut(s) 84, 153, 225, 277, 413, 489, 537, 559
SfaNI GCATC 2 cut(s) 36, 343
SfcI CTRYAG 1 cut(s) 417
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 2 cut(s) 83, 371
SmoI CTYRAG 2 cut(s) 83, 371
SphI GCATGC 1 cut(s) 271
Sse9I AATT 2 cut(s) 64, 163
SsiI CCGC 2 cut(s) 61, 122
SspMI CTAG 1 cut(s) 272
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 138
TaaI ACNGT 2 cut(s) 190, 477
TasI AATT 2 cut(s) 64, 163
Tru1I TTAA 2 cut(s) 314, 539
Tru9I TTAA 2 cut(s) 314, 539
TscAI CASTG 3 cut(s) 40, 193, 421
TseI GCWGC 3 cut(s) 95, 329, 404
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 40, 193, 421
XapI RAATTY 1 cut(s) 163
XceI RCATGY 1 cut(s) 271
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.