RLG00000000990

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000101
Physical Location & Seq
Reverse (-)
8913475 .. 8916722
3248 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000990

Sequence Viewer

Length: 1584 bp
ATGGAGGACACCAGCTTCCCCAATTCTTGTGCCGATGACCTCAAGAACCATGTAATGAAGGTTTTCAAGGAGGCCACCAAAGACTGTGAGGACAAGGTCTTGAAAGAAATATTTGACTTGATTAGGAACTATGACGACCTTAACGAATTTGGGATCCAAGTGTTCAATTTGTTGGCAAATTCCGACCAGGCTAATGAAGACAAAGAGCTATTTAGGCCTATCTCTGTGCTGGCTGTATTGCCGGATGTGGCTGTCCTCACAATGGCCTATCAGCACATGGTAGCCACTGGTGTCACCCCCACCTCCGCTAATTACAATGCACTCATCACAGCATTCGCAGAAGACGAGTCTTCTGATTCCAGTTTTGTTGGCCATGCTAAGAAGTATTTTTTGGAAATGTTGGATAAGGGGATGAAGCCCCATCCTGGTTGCTATATATCTGTGTTTGACGCCATTTCCTGTCGTGAGTCAGTGGACAAGGCCAAGGAGGTCCTTGAGCAAATAAAAGCAAAGGGGTTTACTCCTGCAATCAGGTTGTACAGTGATCTCATCAATAACACCACCGACAAGGATTTGCGAAAAGTCTTCTGCAAGTGGAGCATCCGTGGCCTCAAGAAGGAGGCATTGAGGATGTTCCATGCTTTGGTAGATGATGGAGATGTAGACGAGGTCAAGGAGATTGTTAGGCCCACCCTTGAGACAGGCGTAGAATCCATGGTTGCAATACACACCTCCATTATTAAGGCCTACCTCAATGCTGGAAAGACCAATGGAGCTCTCGAGGCCTACCGTGGCATGTTAGCTGCTGGGGTTGCCCCCAACTCTTACATTTACACTGTTTTAATCAAGGGACTCACTACTGACCCCAACTTTTTTGAAGATGCCAAGAAGTGCTTGCTTGAGATGATGGACAAGGGGAAGCGGCCCAATGTTGCTACTTATATTGCGGTGATAGAGGCCTTTGCAAGGCAGGAGGACAAGGCAGTTGAGGAGGAGGGCAAAGACTTGGTGTGGGTGATGATGAGTAAGGGGTTTGTGCCTAATGCAAAAGTAATGAGGGAGGATATGTCAAATGGCCTCAGACTTGCCTCTGAGCTTGGTTGTAGAGCTGTGGACGTGGAACCTGAATCAAGTTTTGTTGTTTCAATAGCTTGGAAGAGTTACATCCTCTCTACAGCTTCAGATACAGCTGCAAAGAGTTTTCCACATGCTAGAAGGACCAATGCAGCTACCTACACTACGGTGATAGAGGGTTTTGCAAGGCAGGAAGGCAGGGCAGCTGAGGATGAGGGCAAAGAGTTTGTGGAGGTGATGATGGGTAAGGGGTTAATTGTGCCTAATGCAAAGGCAATGAGGGAGGTTTTAAAGGGAACCGACATCTGTTATTCGAAGGGTCATGAATACTGTCCTTTCCAAGTTGAAAGGCTGATTCTTTGGTTCATTGAGGTTACTCTAGTAGCTTCAAGATTAGGTGGTTTCATATATGGTGAGAGTAGAAAATCATGTAGGATTGGGTTTGGTGCTGTTCTTTATCATTTTGAATGTGACATTGAAGTACTGATCCTTCGCTTGAGGCTATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

528

Amino Acids

58.81

Weight (kDa)

5.46

Isoelectric Point (pI)

28.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 242 - 327 5.2e-08 Fungal tetratrico peptide repeats
PPR_2 PF13041 244 - 285 7.4e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 643
AccI GTMKAC 1 cut(s) 663
AciI CCGC 3 cut(s) 306, 922, 947
AclWI GGATC 3 cut(s) 148, 161, 1555
AcoI YGGCCR 1 cut(s) 370
AcsI RAATTY 2 cut(s) 146, 178
AcuI CTGAAG 1 cut(s) 1164
AcyI GRCGYC 1 cut(s) 450
AfaI GTAC 2 cut(s) 539, 1557
AfiI CCNNNNNNNGG 5 cut(s) 262, 425, 616, 643, 966
AgsI TTSAA 9 cut(s) 67, 103, 166, 878, 1146, 1421, 1464, 1541, 1553
AjiI CACGTC 1 cut(s) 1117
AjnI CCWGG 2 cut(s) 186, 424
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AleI CACNNNNGTG 1 cut(s) 1241
Alw21I GWGCWC 1 cut(s) 778
Alw26I GTCTC 1 cut(s) 692
AlwI GGATC 3 cut(s) 148, 161, 1555
Ama87I CYCGRG 1 cut(s) 779
ApeKI GCWGC 4 cut(s) 803, 1190, 1226, 1277
ApoI RAATTY 2 cut(s) 146, 178
Asp700I GAANNNNTTC 1 cut(s) 62
AspS9I GGNCC 4 cut(s) 490, 687, 924, 1218
AsuHPI GGTGA 6 cut(s) 286, 961, 1027, 1255, 1321, 1499
AsuII TTCGAA 1 cut(s) 1388
AvaI CYCGRG 1 cut(s) 779
AvaII GGWCC 2 cut(s) 490, 1218
BalI TGGCCA 1 cut(s) 372
BamHI GGATCC 1 cut(s) 153
BanII GRGCYC 1 cut(s) 778
BarI GAAGNNNNNNTAC 2 cut(s) 1548, 1580
BbsI GAAGAC 4 cut(s) 204, 342, 348, 577
Bbv12I GWGCWC 1 cut(s) 778
BbvCI CCTCAGC 1 cut(s) 1281
BbvI GCAGC 4 cut(s) 790, 1177, 1238, 1289
BccI CCATC 4 cut(s) 429, 647, 901, 1309
BciT130I CCWGG 2 cut(s) 188, 426
BcoDI GTCTC 1 cut(s) 692
BfaI CTAG 2 cut(s) 1212, 1454
BfmI CTRYAG 1 cut(s) 1173
BisI GCNGC 5 cut(s) 804, 923, 1191, 1227, 1278
BlsI GCNGC 5 cut(s) 805, 924, 1192, 1228, 1279
BmcAI AGTACT 1 cut(s) 1557
Bme1390I CCNGG 2 cut(s) 188, 426
Bme18I GGWCC 2 cut(s) 490, 1218
BmeT110I CYCGRG 1 cut(s) 779
BmgBI CACGTC 1 cut(s) 1117
BmgT120I GGNCC 4 cut(s) 490, 687, 924, 1218
BmiI GGNNCC 3 cut(s) 155, 1122, 1372
BmrFI CCNGG 2 cut(s) 188, 426
BmsI GCATC 2 cut(s) 609, 871
BpiI GAAGAC 4 cut(s) 204, 342, 348, 577
Bpu10I CCTNAGC 1 cut(s) 1281
Bpu14I TTCGAA 1 cut(s) 1388
BpuEI CTTGAG 5 cut(s) 26, 515, 596, 716, 920
BsaHI GRCGYC 1 cut(s) 450
BsaJI CCNNGG 4 cut(s) 483, 604, 714, 790
BsaXI ACNNNNNCTCC 4 cut(s) 589, 619, 1052, 1082
Bsc4I CCNNNNNNNGG 5 cut(s) 262, 425, 616, 643, 966
Bse1I ACTGG 2 cut(s) 292, 360
Bse3DI GCAATG 1 cut(s) 1356
BseBI CCWGG 2 cut(s) 188, 426
BseDI CCNNGG 4 cut(s) 483, 604, 714, 790
BseGI GGATG 7 cut(s) 250, 417, 421, 600, 636, 1164, 1291
BseLI CCNNNNNNNGG 5 cut(s) 262, 425, 616, 643, 966
BseMI GCAATG 1 cut(s) 1356
BseMII CTCAG 3 cut(s) 1083, 1093, 1272
BseNI ACTGG 2 cut(s) 292, 360
BseRI GAGGAG 2 cut(s) 1004, 1007
BseXI GCAGC 4 cut(s) 790, 1177, 1238, 1289
BseYI CCCAGC 1 cut(s) 806
BsiHKAI GWGCWC 1 cut(s) 778
BsiHKCI CYCGRG 1 cut(s) 779
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 864
BslI CCNNNNNNNGG 5 cut(s) 262, 425, 616, 643, 966
BsmAI GTCTC 1 cut(s) 692
BsmFI GGGAC 1 cut(s) 864
BsmI GAATGC 1 cut(s) 332
BsoBI CYCGRG 1 cut(s) 779
Bsp119I TTCGAA 1 cut(s) 1388
Bsp1286I GDGCHC 1 cut(s) 778
Bsp1407I TGTACA 1 cut(s) 537
Bsp143I GATC 3 cut(s) 153, 544, 1560
Bsp19I CCATGG 1 cut(s) 714
BspACI CCGC 3 cut(s) 306, 922, 947
BspCNI CTCAG 3 cut(s) 1084, 1092, 1273
BspHI TCATGA 1 cut(s) 1396
BspLI GGNNCC 3 cut(s) 155, 1122, 1372
BspPI GGATC 3 cut(s) 148, 161, 1555
BspT104I TTCGAA 1 cut(s) 1388
BsrDI GCAATG 1 cut(s) 1356
BsrGI TGTACA 1 cut(s) 537
BsrI ACTGG 2 cut(s) 292, 360
BssECI CCNNGG 4 cut(s) 483, 604, 714, 790
BssMI GATC 3 cut(s) 153, 544, 1560
BssNI GRCGYC 1 cut(s) 450
BssT1I CCWWGG 2 cut(s) 483, 714
Bst2UI CCWGG 2 cut(s) 188, 426
Bst4CI ACNGT 6 cut(s) 86, 542, 791, 838, 1243, 1406
Bst6I CTCTTC 1 cut(s) 1151
BstACI GRCGYC 1 cut(s) 450
BstAUI TGTACA 1 cut(s) 537
BstBI TTCGAA 1 cut(s) 1388
BstC8I GCNNGC 2 cut(s) 231, 896
BstDEI CTNAG 4 cut(s) 378, 1079, 1092, 1281
BstDSI CCRYGG 3 cut(s) 604, 714, 790
BstENI CCTNNNNNAGG 2 cut(s) 614, 964
BstF5I GGATG 7 cut(s) 250, 417, 421, 600, 636, 1164, 1291
BstKTI GATC 3 cut(s) 156, 547, 1563
BstMAI GTCTC 1 cut(s) 692
BstMBI GATC 3 cut(s) 153, 544, 1560
BstMWI GCNNNNNNNGC 5 cut(s) 214, 597, 606, 782, 812
BstNI CCWGG 2 cut(s) 188, 426
BstNSI RCATGY 2 cut(s) 799, 1211
BstSCI CCNGG 2 cut(s) 186, 424
BstSFI CTRYAG 1 cut(s) 1173
BstV1I GCAGC 4 cut(s) 790, 1177, 1238, 1289
BstV2I GAAGAC 4 cut(s) 204, 342, 348, 577
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BtgI CCRYGG 3 cut(s) 604, 714, 790
BtrI CACGTC 1 cut(s) 1117
BtsCI GGATG 7 cut(s) 250, 417, 421, 600, 636, 1164, 1291
BtsIMutI CAGTG 4 cut(s) 285, 477, 547, 834
Cac8I GCNNGC 2 cut(s) 231, 896
CciI TCATGA 1 cut(s) 1396
Cfr13I GGNCC 4 cut(s) 490, 687, 924, 1218
CseI GACGC 1 cut(s) 458
Csp6I GTAC 2 cut(s) 538, 1556
CviAII CATG 9 cut(s) 50, 277, 374, 638, 715, 796, 1208, 1397, 1503
CviQI GTAC 2 cut(s) 538, 1556
DdeI CTNAG 4 cut(s) 378, 1079, 1092, 1281
DpnI GATC 3 cut(s) 155, 546, 1562
DpnII GATC 3 cut(s) 153, 544, 1560
DraI TTTAAA 1 cut(s) 1365
EaeI YGGCCR 1 cut(s) 370
Eam1104I CTCTTC 1 cut(s) 1151
EarI CTCTTC 1 cut(s) 1151
Ecl136II GAGCTC 1 cut(s) 776
Eco130I CCWWGG 2 cut(s) 483, 714
Eco147I AGGCCT 4 cut(s) 217, 746, 785, 959
Eco24I GRGCYC 1 cut(s) 778
Eco47I GGWCC 2 cut(s) 490, 1218
Eco53kI GAGCTC 1 cut(s) 776
Eco57I CTGAAG 1 cut(s) 1164
Eco88I CYCGRG 1 cut(s) 779
EcoICRI GAGCTC 1 cut(s) 776
EcoNI CCTNNNNNAGG 2 cut(s) 614, 964
EcoO109I RGGNCCY 1 cut(s) 490
EcoRII CCWGG 2 cut(s) 186, 424
EcoT14I CCWWGG 2 cut(s) 483, 714
EcoT38I GRGCYC 1 cut(s) 778
ErhI CCWWGG 2 cut(s) 483, 714
FaeI CATG 9 cut(s) 53, 280, 377, 641, 718, 799, 1211, 1400, 1506
FalI AAGNNNNNCTT 2 cut(s) 878, 910
FaqI GGGAC 1 cut(s) 864
FatI CATG 9 cut(s) 49, 276, 373, 637, 714, 795, 1207, 1396, 1502
FblI GTMKAC 1 cut(s) 663
Fnu4HI GCNGC 5 cut(s) 804, 923, 1191, 1227, 1278
FokI GGATG 7 cut(s) 257, 408, 424, 587, 643, 1151, 1298
FriOI GRGCYC 1 cut(s) 778
Fsp4HI GCNGC 5 cut(s) 804, 923, 1191, 1227, 1278
FspBI CTAG 2 cut(s) 1212, 1454
GluI GCNGC 5 cut(s) 804, 923, 1191, 1227, 1278
GsaI CCCAGC 1 cut(s) 810
HapII CCGG 1 cut(s) 242
HgaI GACGC 1 cut(s) 458
Hin1I GRCGYC 1 cut(s) 450
Hin1II CATG 9 cut(s) 53, 280, 377, 641, 718, 799, 1211, 1400, 1506
HinfI GANTC 7 cut(s) 347, 356, 467, 710, 852, 1127, 1429
HpaII CCGG 1 cut(s) 242
HphI GGTGA 6 cut(s) 286, 961, 1027, 1255, 1321, 1499
Hpy166II GTNNAC 4 cut(s) 475, 519, 664, 1114
Hpy188I TCNGA 5 cut(s) 184, 355, 1082, 1093, 1183
Hpy188III TCNNGA 7 cut(s) 43, 100, 464, 613, 779, 1397, 1464
Hpy8I GTNNAC 4 cut(s) 475, 519, 664, 1114
HpyAV CCTTC 6 cut(s) 52, 610, 1209, 1262, 1384, 1574
HpyCH4III ACNGT 6 cut(s) 86, 542, 791, 838, 1243, 1406
HpyCH4IV ACGT 1 cut(s) 1116
HpyF10VI GCNNNNNNNGC 5 cut(s) 214, 597, 606, 782, 812
HpyF3I CTNAG 4 cut(s) 378, 1079, 1092, 1281
HpySE526I ACGT 1 cut(s) 1116
Hsp92I GRCGYC 1 cut(s) 450
Hsp92II CATG 9 cut(s) 53, 280, 377, 641, 718, 799, 1211, 1400, 1506
Kzo9I GATC 3 cut(s) 153, 544, 1560
LmnI GCTCC 2 cut(s) 597, 773
Lsp1109I GCAGC 4 cut(s) 790, 1177, 1238, 1289
LweI GCATC 2 cut(s) 609, 871
MaeI CTAG 2 cut(s) 1212, 1454
MaeII ACGT 1 cut(s) 1116
MaeIII GTNAC 4 cut(s) 292, 1160, 1447, 1544
MalI GATC 3 cut(s) 155, 546, 1562
MboI GATC 3 cut(s) 153, 544, 1560
MboII GAAGA 6 cut(s) 209, 342, 353, 577, 890, 1168
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 778
MlsI TGGCCA 1 cut(s) 372
MluCI AATT 6 cut(s) 22, 146, 166, 178, 310, 1329
MluNI TGGCCA 1 cut(s) 372
MlyI GAGTC 3 cut(s) 356, 476, 846
MmeI TCCRAC 2 cut(s) 207, 381
Mox20I TGGCCA 1 cut(s) 372
MroXI GAANNNNTTC 1 cut(s) 62
MscI TGGCCA 1 cut(s) 372
MseI TTAA 5 cut(s) 141, 741, 842, 1328, 1364
MslI CAYNNNNRTG 1 cut(s) 1241
Msp20I TGGCCA 1 cut(s) 372
MspA1I CMGCKG 2 cut(s) 1190, 1280
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 2 cut(s) 188, 426
Mva1269I GAATGC 1 cut(s) 332
MvaI CCWGG 2 cut(s) 188, 426
MwoI GCNNNNNNNGC 5 cut(s) 214, 597, 606, 782, 812
NcoI CCATGG 1 cut(s) 714
NdeII GATC 3 cut(s) 153, 544, 1560
NlaIII CATG 9 cut(s) 53, 280, 377, 641, 718, 799, 1211, 1400, 1506
NlaIV GGNNCC 3 cut(s) 155, 1122, 1372
NmuCI GTSAC 2 cut(s) 292, 1544
NspI RCATGY 2 cut(s) 799, 1211
NspV TTCGAA 1 cut(s) 1388
OliI CACNNNNGTG 1 cut(s) 1241
PaeR7I CTCGAG 1 cut(s) 779
PagI TCATGA 1 cut(s) 1396
PceI AGGCCT 4 cut(s) 217, 746, 785, 959
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 342
PctI GAATGC 1 cut(s) 332
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 4 cut(s) 356, 710, 1127, 1429
PflFI GACNNNGTC 2 cut(s) 95, 668
PflMI CCANNNNNTGG 1 cut(s) 643
PkrI GCNGC 5 cut(s) 805, 924, 1192, 1228, 1279
PleI GAGTC 3 cut(s) 355, 475, 846
PpsI GAGTC 3 cut(s) 355, 475, 846
PpuMI RGGWCCY 1 cut(s) 490
Psp124BI GAGCTC 1 cut(s) 778
Psp5II RGGWCCY 1 cut(s) 490
Psp6I CCWGG 2 cut(s) 186, 424
PspFI CCCAGC 1 cut(s) 806
PspGI CCWGG 2 cut(s) 186, 424
PspN4I GGNNCC 3 cut(s) 155, 1122, 1372
PspPI GGNCC 4 cut(s) 490, 687, 924, 1218
PspPPI RGGWCCY 1 cut(s) 490
PsuI RGATCY 1 cut(s) 153
PsyI GACNNNGTC 2 cut(s) 95, 668
PvuII CAGCTG 2 cut(s) 1190, 1280
RsaI GTAC 2 cut(s) 539, 1557
RsaNI GTAC 2 cut(s) 538, 1556
RseI CAYNNNNRTG 1 cut(s) 1241
SacI GAGCTC 1 cut(s) 778
SaqAI TTAA 5 cut(s) 141, 741, 842, 1328, 1364
SatI GCNGC 5 cut(s) 804, 923, 1191, 1227, 1278
Sau3AI GATC 3 cut(s) 153, 544, 1560
Sau96I GGNCC 4 cut(s) 490, 687, 924, 1218
ScaI AGTACT 1 cut(s) 1557
SchI GAGTC 3 cut(s) 356, 476, 846
ScrFI CCNGG 2 cut(s) 188, 426
SduI GDGCHC 1 cut(s) 778
SfaNI GCATC 2 cut(s) 609, 871
SfcI CTRYAG 1 cut(s) 1173
Sfr274I CTCGAG 1 cut(s) 779
SfuI TTCGAA 1 cut(s) 1388
SinI GGWCC 2 cut(s) 490, 1218
SlaI CTCGAG 1 cut(s) 779
SmiMI CAYNNNNRTG 1 cut(s) 1241
SmlI CTYRAG 7 cut(s) 41, 494, 611, 695, 779, 899, 1570
SmoI CTYRAG 7 cut(s) 41, 494, 611, 695, 779, 899, 1570
Sse9I AATT 6 cut(s) 22, 146, 166, 178, 310, 1329
SseBI AGGCCT 4 cut(s) 217, 746, 785, 959
SsiI CCGC 3 cut(s) 306, 922, 947
SspI AATATT 1 cut(s) 111
SspMI CTAG 2 cut(s) 1212, 1454
SstI GAGCTC 1 cut(s) 778
StuI AGGCCT 4 cut(s) 217, 746, 785, 959
StyD4I CCNGG 2 cut(s) 186, 424
StyI CCWWGG 2 cut(s) 483, 714
TaaI ACNGT 6 cut(s) 86, 542, 791, 838, 1243, 1406
TaiI ACGT 1 cut(s) 1119
TaqI TCGA 2 cut(s) 780, 1388
TasI AATT 6 cut(s) 22, 146, 166, 178, 310, 1329
TatI WGTACW 2 cut(s) 537, 1555
TauI GCSGC 1 cut(s) 925
TfiI GAWTC 4 cut(s) 356, 710, 1127, 1429
Tru1I TTAA 5 cut(s) 141, 741, 842, 1328, 1364
Tru9I TTAA 5 cut(s) 141, 741, 842, 1328, 1364
TscAI CASTG 4 cut(s) 292, 477, 547, 841
TseFI GTSAC 2 cut(s) 292, 1544
TseI GCWGC 4 cut(s) 803, 1190, 1226, 1277
Tsp45I GTSAC 2 cut(s) 292, 1544
TspDTI ATGAA 6 cut(s) 71, 210, 428, 1413, 1429, 1468
TspGWI ACGGA 1 cut(s) 593
TspRI CASTG 4 cut(s) 292, 477, 547, 841
Tth111I GACNNNGTC 2 cut(s) 95, 668
Van91I CCANNNNNTGG 1 cut(s) 643
VpaK11BI GGWCC 2 cut(s) 490, 1218
XagI CCTNNNNNAGG 2 cut(s) 614, 964
XapI RAATTY 2 cut(s) 146, 178
XceI RCATGY 2 cut(s) 799, 1211
XhoI CTCGAG 1 cut(s) 779
XmiI GTMKAC 1 cut(s) 663
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 2 cut(s) 1212, 1454
ZrmI AGTACT 1 cut(s) 1557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.