Rorug07G0293300

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000101
Physical Location & Seq
Forward (+)
28665115 .. 28667188
2074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0293300.1

Sequence Viewer

Length: 1170 bp
ATGTTGTCTGTTAGGATGTTGAAACCAACCAAGGCATCCGCCAATGACAAGAAGAAGAGGTTATCAATTGCAAGCAAGGTGGGTCAAGATGTGGCTTCTTCACAGGTCAAGAAAACTCGTGGCATTACAAGAGGTGTAGGAACTCATGCTGTTGTCAATGCAGCAAAAAAGAGAATTCCAATTCGGATGGATCATGAACAAAAACTCCCTAAGACCATCCAAGCTAATGCTATGTTTAGTTCTGAGATTGGATCGCTAACGCGCAAACATGCTCCACTTATTGTCAAGACTTGGAAAAAAGTCTCTAAAAATGATAAGACTACTATCATAACAGCTTTGACAACAAAGTTTGAGTTTGATGAAACAGACCCTGATATAATGAAGTACATTGAAGATCATATGGCGAAGTCATATAGACAATGGAAATGCAAGCTTCACAAACACTTTAAGCTCCATGCCGATAACTTTGAGTATGCACGAGCACACCCTCCTCCAGAGAAACTGTGGGGTAAAAGACAGATGGCAGAGTGGGAGTATTTATGTGATGAGTTGTTTATTACAGAGGATTATCAGAAACGTTGCAAAACCAATGCTGAGAACCGAAGTAACTTAAAATACAATCATTGTGGGGGTTCAAGGCCATTCCAAAAACATATGGAAGCTGCATTAGAGAAGGGTAAGGATATGAAAATTGTTGAGAATTGGGGTATCATGCATCAACATCAAGGTGGCTTGGGTGCATGGGTTAACGATGAAGCAGAAAATATAGGGAAAATGTTGGATGAATTGGAGAAGGAAAAGCAAAAATTGGCTGAAATTCAAAGTATGTCAACTGACGAAATTTCAGTTCCTCTCCCAACACAATTGGAGATTTTGGCGAAAGGGGTTGGAGTCATGAAGGGCAAGACCATTCGGGGCATAGGATATGGCCTTCAAAGGGAGACTATTTATACTGCTGCCAATTCTTCAAGCACAAGTGAGTACACAACAGAGGAGTTGTTGAGCACAATGGGAAAGATGGCATTGAAGATAGAAGAATTGGAAGCTAAATTTGCGGCTTATGCAAAAGCAAATATGTATCCTCCTTGTGATGATGGTACTGGTGAGAATGATCAAGAAATGGATGCTGAAGATGATGAAGATGAGGAGGATCATGCCTATATGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

389

Amino Acids

44.2

Weight (kDa)

7.67

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 177 - 309 5.5e-09 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 262
AciI CCGC 2 cut(s) 39, 1055
AclI AACGTT 1 cut(s) 577
AclWI GGATC 3 cut(s) 198, 259, 1158
AcsI RAATTY 4 cut(s) 174, 816, 840, 1049
AcuI CTGAAG 1 cut(s) 1149
AfaI GTAC 3 cut(s) 386, 983, 1099
AfiI CCNNNNNNNGG 1 cut(s) 937
AgsI TTSAA 7 cut(s) 22, 392, 636, 821, 935, 969, 1027
AloI GAACNNNNNNTCC 2 cut(s) 189, 221
AluBI AGCT 6 cut(s) 224, 335, 433, 451, 662, 1046
AluI AGCT 6 cut(s) 224, 335, 433, 451, 662, 1046
Alw21I GWGCWC 2 cut(s) 484, 1007
Alw26I GTCTC 2 cut(s) 307, 935
AlwI GGATC 3 cut(s) 198, 259, 1158
AlwNI CAGNNNCTG 1 cut(s) 371
AoxI GGCC 2 cut(s) 638, 928
ApeKI GCWGC 3 cut(s) 161, 662, 956
ApoI RAATTY 4 cut(s) 174, 816, 840, 1049
AspLEI GCGC 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 1115
BauI CACGAG 2 cut(s) 117, 477
Bbv12I GWGCWC 2 cut(s) 484, 1007
BbvI GCAGC 3 cut(s) 173, 649, 943
BccI CCATC 5 cut(s) 181, 224, 514, 1012, 1088
BciVI GTATCC 1 cut(s) 1089
BclI TGATCA 1 cut(s) 1111
BcoDI GTCTC 2 cut(s) 307, 935
BfuI GTATCC 1 cut(s) 1089
BisI GCNGC 4 cut(s) 162, 663, 957, 1056
BlsI GCNGC 4 cut(s) 163, 664, 958, 1057
BmsI GCATC 3 cut(s) 44, 724, 1114
BpmI CTGGAG 1 cut(s) 477
BsaJI CCNNGG 1 cut(s) 30
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 1 cut(s) 937
Bse1I ACTGG 1 cut(s) 1105
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 6 cut(s) 21, 35, 192, 216, 787, 1129
BseLI CCNNNNNNNGG 1 cut(s) 937
BseMII CTCAG 2 cut(s) 234, 585
BseNI ACTGG 1 cut(s) 1105
BseRI GAGGAG 3 cut(s) 480, 1007, 1160
BseXI GCAGC 3 cut(s) 173, 649, 943
Bsh1236I CGCG 1 cut(s) 262
BshFI GGCC 2 cut(s) 640, 930
BsiHKAI GWGCWC 2 cut(s) 484, 1007
BslI CCNNNNNNNGG 1 cut(s) 937
BsmAI GTCTC 2 cut(s) 307, 935
BsnI GGCC 2 cut(s) 640, 930
Bsp1286I GDGCHC 2 cut(s) 484, 1007
Bsp143I GATC 5 cut(s) 190, 251, 394, 1111, 1150
BspACI CCGC 2 cut(s) 39, 1055
BspANI GGCC 2 cut(s) 640, 930
BspCNI CTCAG 2 cut(s) 235, 586
BspFNI CGCG 1 cut(s) 262
BspHI TCATGA 2 cut(s) 193, 894
BspPI GGATC 3 cut(s) 198, 259, 1158
BsrI ACTGG 1 cut(s) 1105
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 5 cut(s) 190, 251, 394, 1111, 1150
BssSI CACGAG 2 cut(s) 117, 477
BssT1I CCWWGG 1 cut(s) 30
Bst2BI CACGAG 2 cut(s) 117, 477
Bst4CI ACNGT 1 cut(s) 504
Bst6I CTCTTC 1 cut(s) 50
BstC8I GCNNGC 2 cut(s) 73, 431
BstDEI CTNAG 3 cut(s) 210, 243, 594
BstF5I GGATG 6 cut(s) 21, 35, 192, 216, 787, 1129
BstFNI CGCG 1 cut(s) 262
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 5 cut(s) 193, 254, 397, 1114, 1153
BstMAI GTCTC 2 cut(s) 307, 935
BstMBI GATC 5 cut(s) 190, 251, 394, 1111, 1150
BstMWI GCNNNNNNNGC 2 cut(s) 1052, 1061
BstNSI RCATGY 1 cut(s) 272
BstUI CGCG 1 cut(s) 262
BstV1I GCAGC 3 cut(s) 173, 649, 943
BsuI GTATCC 1 cut(s) 1089
BsuRI GGCC 2 cut(s) 640, 930
BtsCI GGATG 6 cut(s) 21, 35, 192, 216, 787, 1129
Cac8I GCNNGC 2 cut(s) 73, 431
CaiI CAGNNNCTG 1 cut(s) 371
CciI TCATGA 2 cut(s) 193, 894
CfoI GCGC 1 cut(s) 264
Csp6I GTAC 3 cut(s) 385, 982, 1098
CspCI CAANNNNNGTGG 4 cut(s) 60, 95, 607, 642
CviAII CATG 8 cut(s) 146, 194, 269, 455, 712, 741, 895, 1154
CviQI GTAC 3 cut(s) 385, 982, 1098
DdeI CTNAG 3 cut(s) 210, 243, 594
DpnI GATC 5 cut(s) 192, 253, 396, 1113, 1152
DpnII GATC 5 cut(s) 190, 251, 394, 1111, 1150
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EciI GGCGGA 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 1149
EcoRI GAATTC 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 30
EcoT22I ATGCAT 2 cut(s) 717, 1167
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 8 cut(s) 149, 197, 272, 458, 715, 744, 898, 1157
FatI CATG 8 cut(s) 145, 193, 268, 454, 711, 740, 894, 1153
FauNDI CATATG 2 cut(s) 399, 654
FbaI TGATCA 1 cut(s) 1111
Fnu4HI GCNGC 4 cut(s) 162, 663, 957, 1056
FokI GGATG 6 cut(s) 22, 28, 199, 203, 794, 1136
Fsp4HI GCNGC 4 cut(s) 162, 663, 957, 1056
GlaI GCGC 1 cut(s) 263
GluI GCNGC 4 cut(s) 162, 663, 957, 1056
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 2 cut(s) 640, 930
HhaI GCGC 1 cut(s) 264
Hin1II CATG 8 cut(s) 149, 197, 272, 458, 715, 744, 898, 1157
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HincII GTYRAC 2 cut(s) 748, 831
HindII GTYRAC 2 cut(s) 748, 831
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 1 cut(s) 891
HpaI GTTAAC 1 cut(s) 748
HphI GGTGA 1 cut(s) 1115
Hpy166II GTNNAC 3 cut(s) 748, 831, 984
Hpy188I TCNGA 3 cut(s) 186, 244, 573
Hpy188III TCNNGA 7 cut(s) 86, 109, 194, 286, 494, 895, 1115
Hpy8I GTNNAC 3 cut(s) 748, 831, 984
HpyAV CCTTC 4 cut(s) 667, 787, 892, 941
HpyCH4III ACNGT 1 cut(s) 504
HpyCH4IV ACGT 1 cut(s) 577
HpyF10VI GCNNNNNNNGC 2 cut(s) 1052, 1061
HpyF3I CTNAG 3 cut(s) 210, 243, 594
HpySE526I ACGT 1 cut(s) 577
Hsp92II CATG 8 cut(s) 149, 197, 272, 458, 715, 744, 898, 1157
HspAI GCGC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 1111
KspAI GTTAAC 1 cut(s) 748
Kzo9I GATC 5 cut(s) 190, 251, 394, 1111, 1150
LmnI GCTCC 2 cut(s) 277, 456
LpnPI CCDG 4 cut(s) 89, 384, 507, 1086
Lsp1109I GCAGC 3 cut(s) 173, 649, 943
LweI GCATC 3 cut(s) 44, 724, 1114
MaeII ACGT 1 cut(s) 577
MaeIII GTNAC 1 cut(s) 605
MalI GATC 5 cut(s) 192, 253, 396, 1113, 1152
MboI GATC 5 cut(s) 190, 251, 394, 1111, 1150
MboII GAAGA 9 cut(s) 64, 67, 90, 404, 957, 1039, 1046, 1142, 1151
MfeI CAATTG 2 cut(s) 66, 863
MhlI GDGCHC 2 cut(s) 484, 1007
MlyI GAGTC 1 cut(s) 900
MmeI TCCRAC 2 cut(s) 759, 868
Mph1103I ATGCAT 2 cut(s) 717, 1167
MseI TTAA 4 cut(s) 447, 611, 747, 1168
MslI CAYNNNNRTG 1 cut(s) 726
MunI CAATTG 2 cut(s) 66, 863
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 2 cut(s) 1052, 1061
NdeI CATATG 2 cut(s) 399, 654
NdeII GATC 5 cut(s) 190, 251, 394, 1111, 1150
NlaIII CATG 8 cut(s) 149, 197, 272, 458, 715, 744, 898, 1157
NsiI ATGCAT 2 cut(s) 717, 1167
NspI RCATGY 1 cut(s) 272
PagI TCATGA 2 cut(s) 193, 894
PkrI GCNGC 4 cut(s) 163, 664, 958, 1057
PleI GAGTC 1 cut(s) 899
PpsI GAGTC 1 cut(s) 899
Psp1406I AACGTT 1 cut(s) 577
PstNI CAGNNNCTG 1 cut(s) 371
RsaI GTAC 3 cut(s) 386, 983, 1099
RsaNI GTAC 3 cut(s) 385, 982, 1098
RseI CAYNNNNRTG 1 cut(s) 726
SaqAI TTAA 4 cut(s) 447, 611, 747, 1168
SatI GCNGC 4 cut(s) 162, 663, 957, 1056
Sau3AI GATC 5 cut(s) 190, 251, 394, 1111, 1150
SchI GAGTC 1 cut(s) 900
SduI GDGCHC 2 cut(s) 484, 1007
SfaNI GCATC 3 cut(s) 44, 724, 1114
SmiMI CAYNNNNRTG 1 cut(s) 726
SsiI CCGC 2 cut(s) 39, 1055
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 504
TaiI ACGT 1 cut(s) 580
TatI WGTACW 2 cut(s) 384, 981
TauI GCSGC 1 cut(s) 1058
Tru1I TTAA 4 cut(s) 447, 611, 747, 1168
Tru9I TTAA 4 cut(s) 447, 611, 747, 1168
TseI GCWGC 3 cut(s) 161, 662, 956
TspDTI ATGAA 8 cut(s) 210, 375, 395, 701, 768, 798, 911, 1152
XapI RAATTY 4 cut(s) 174, 816, 840, 1049
XceI RCATGY 1 cut(s) 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 501
Zsp2I ATGCAT 2 cut(s) 717, 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.