RLG00000001133

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000101
Physical Location & Seq
Reverse (-)
10641247 .. 10642479
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001133

Sequence Viewer

Length: 1233 bp
ATGGCGGATACTAGTTCCCCCAATTCTTCTGCCGGTGACCTAAAGAAACATGCAATGAGGGTTTTCAAGGAAGCGACCAAAGACTGTGCGGACATTGTCTTTGAAATAAAATTTGACATGATTCGGGACTACGAATCCCTTCATCAATTTGCAGTTGCTTTGTTCAAATCTATAGCAAATACCGGCCTGGTTGACTTCCCCGAAGAGCTTAAGGCTCTCTCTGAGGTGGCCATACTGTCCGATGTGGCTGTACACACCATTGTCATTGGGGAATACTTCACTGCCCGAAAGACCAAGGCTGCTCTCAAGGCCTTTCAGCACATGATAGCCACTGGTGTCGCCCCCAAATCCTGCAGTTACAGCTTGCTCATCACGGCCCTTGCATTAGACTTTTCTGATCCCAATTTTCTTGTGAATGCCAAGAAGTACTTTATGGAAATGTTGGTTAGGGGATTCAAGCCCAATTCTGGGTCCTACATGTTAGTGTTGGATGCCATTTCCTGCCGGGAGTCGGAGGGGAAGGCCAGGGAGTTCCTTGAACAGATCAAAGCCAAGGGGTTTGTCCCTGCACGTAATCTTTATCAATTTGAAGTAGGCCACGCCATAGAAGCGATGAGTGCAATGAAGATGTATGATGATCTGGAGGACAGCATAACTGATGAGGACATGCAAAAGGTCTTCTCAGAGTGGCGCACCAACCACGATCTCCTCACCAAAGAGTCGATGAAGATGTACACGGCTTTGATAGAGGATGACAATGTAGAGCAGGCAATGGAGATCTTTAGGGTCAATGCTGAGAGGGGCATACTTCCCATTGTTGTAGTCCACACCTGTGTTATTGAGGCCTACTTCAGTTTTGGCAAGACCAAGGATGCTCTGGAGTCATATCAGGGGATGTTAGCTGCTGGGGTTGCCCCAAATTGCTACACTTACACTGTCTTAATCAAGGGACTCACTGCTGACCCCAACTTCATTGGAGATGCCAAGAAGTGCTTGCTTGATATGATGGACAGGGGGATGAGGCCCAATGCTGCTACCTACACTGCAGTGTTAGAGGGTTTTGCAAGGAAGGAGGACAAGGCAGCTGAGGAGGAGGGAAAAGAGCTGGTGAAGGTGATGATTCGTAAGGGGCATGGGCCAAAGGCAAAGGCTATGATGGAGGTTTTGAAAGGCAGCCCAACACCTCTAATAAGAAGGGTCCTGGACATTACCTTTTCCAAGTTGAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

411

Amino Acids

45.69

Weight (kDa)

5.99

Isoelectric Point (pI)

26.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 257 - 360 3.2e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 273 - 318 3.1e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 89
AclWI GGATC 1 cut(s) 392
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 1 cut(s) 110
AcuI CTGAAG 1 cut(s) 835
AfaI GTAC 3 cut(s) 252, 428, 734
AfiI CCNNNNNNNGG 3 cut(s) 467, 468, 511
AflII CTTAAG 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 8 cut(s) 67, 104, 166, 457, 539, 590, 1168, 1225
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 3 cut(s) 186, 524, 1200
AleI CACNNNNGTG 2 cut(s) 831, 1046
AluBI AGCT 5 cut(s) 208, 363, 902, 1085, 1105
AluI AGCT 5 cut(s) 208, 363, 902, 1085, 1105
AlwI GGATC 1 cut(s) 392
AoxI GGCC 9 cut(s) 184, 228, 309, 375, 522, 595, 843, 1022, 1136
ApeKI GCWGC 5 cut(s) 299, 902, 1031, 1082, 1173
ApoI RAATTY 1 cut(s) 110
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
Asp700I GAANNNNTTC 1 cut(s) 138
AspLEI GCGC 1 cut(s) 693
AspS9I GGNCC 5 cut(s) 376, 471, 1023, 1136, 1198
AsuC2I CCSGG 1 cut(s) 506
AsuHPI GGTGA 4 cut(s) 47, 703, 1120, 1126
AvaII GGWCC 2 cut(s) 471, 1198
BalI TGGCCA 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 670
BbvCI CCTCAGC 1 cut(s) 1086
BbvI GCAGC 5 cut(s) 286, 889, 1018, 1094, 1185
BccI CCATC 2 cut(s) 1000, 1150
BceAI ACGGC 2 cut(s) 390, 753
BciT130I CCWGG 3 cut(s) 188, 526, 1202
BcnI CCSGG 1 cut(s) 506
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 3 cut(s) 171, 352, 1044
BfrI CTTAAG 1 cut(s) 209
BglII AGATCT 1 cut(s) 777
BisI GCNGC 5 cut(s) 300, 903, 1032, 1083, 1174
BlsI GCNGC 5 cut(s) 301, 904, 1033, 1084, 1175
BmcAI AGTACT 1 cut(s) 428
Bme1390I CCNGG 4 cut(s) 188, 506, 526, 1202
Bme18I GGWCC 2 cut(s) 471, 1198
BmgT120I GGNCC 5 cut(s) 376, 471, 1023, 1136, 1198
BmiI GGNNCC 2 cut(s) 472, 1199
BmrFI CCNGG 4 cut(s) 188, 506, 526, 1202
BmsI GCATC 3 cut(s) 481, 862, 970
BpiI GAAGAC 1 cut(s) 670
BpmI CTGGAG 2 cut(s) 662, 899
Bpu10I CCTNAGC 1 cut(s) 1086
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 506
BsaAI YACGTR 1 cut(s) 572
BsaJI CCNNGG 4 cut(s) 294, 525, 552, 867
Bsc4I CCNNNNNNNGG 3 cut(s) 467, 468, 511
Bse118I RCCGGY 2 cut(s) 32, 182
Bse1I ACTGG 1 cut(s) 337
Bse3DI GCAATG 3 cut(s) 60, 627, 777
BseBI CCWGG 3 cut(s) 188, 526, 1202
BseDI CCNNGG 4 cut(s) 294, 525, 552, 867
BseGI GGATG 5 cut(s) 496, 757, 877, 900, 1023
BseLI CCNNNNNNNGG 3 cut(s) 467, 468, 511
BseMI GCAATG 3 cut(s) 60, 627, 777
BseMII CTCAG 4 cut(s) 213, 696, 786, 1077
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 3 cut(s) 698, 1103, 1106
BseXI GCAGC 5 cut(s) 286, 889, 1018, 1094, 1185
BseYI CCCAGC 1 cut(s) 905
BsgI GTGCAG 1 cut(s) 552
BshFI GGCC 9 cut(s) 186, 230, 311, 377, 524, 597, 845, 1024, 1138
BsiSI CCGG 3 cut(s) 33, 183, 505
BslFI GGGAC 3 cut(s) 140, 548, 963
BslI CCNNNNNNNGG 3 cut(s) 467, 468, 511
BsmFI GGGAC 3 cut(s) 140, 548, 963
BsmI GAATGC 1 cut(s) 421
BsnI GGCC 9 cut(s) 186, 230, 311, 377, 524, 597, 845, 1024, 1138
Bsp1407I TGTACA 2 cut(s) 250, 732
Bsp143I GATC 5 cut(s) 397, 543, 637, 703, 777
BspACI CCGC 2 cut(s) 5, 89
BspANI GGCC 9 cut(s) 186, 230, 311, 377, 524, 597, 845, 1024, 1138
BspCNI CTCAG 4 cut(s) 214, 695, 787, 1078
BspLI GGNNCC 2 cut(s) 472, 1199
BspMAI CTGCAG 2 cut(s) 356, 1048
BspPI GGATC 1 cut(s) 392
BspQI GCTCTTC 1 cut(s) 198
BspTI CTTAAG 1 cut(s) 209
BsrDI GCAATG 3 cut(s) 60, 627, 777
BsrFI RCCGGY 2 cut(s) 32, 182
BsrGI TGTACA 2 cut(s) 250, 732
BsrI ACTGG 1 cut(s) 337
BssAI RCCGGY 2 cut(s) 32, 182
BssECI CCNNGG 4 cut(s) 294, 525, 552, 867
BssMI GATC 5 cut(s) 397, 543, 637, 703, 777
BssT1I CCWWGG 3 cut(s) 294, 552, 867
Bst2UI CCWGG 3 cut(s) 188, 526, 1202
Bst4CI ACNGT 3 cut(s) 86, 237, 937
Bst6I CTCTTC 1 cut(s) 198
BstAFI CTTAAG 1 cut(s) 209
BstAUI TGTACA 2 cut(s) 250, 732
BstBAI YACGTR 1 cut(s) 572
BstC8I GCNNGC 3 cut(s) 365, 768, 995
BstDEI CTNAG 4 cut(s) 222, 682, 795, 1086
BstEII GGTNACC 1 cut(s) 35
BstF5I GGATG 5 cut(s) 496, 757, 877, 900, 1023
BstHHI GCGC 1 cut(s) 693
BstKTI GATC 5 cut(s) 400, 546, 640, 706, 780
BstMBI GATC 5 cut(s) 397, 543, 637, 703, 777
BstMWI GCNNNNNNNGC 5 cut(s) 308, 360, 608, 617, 911
BstNI CCWGG 3 cut(s) 188, 526, 1202
BstNSI RCATGY 3 cut(s) 53, 481, 670
BstPI GGTNACC 1 cut(s) 35
BstSCI CCNGG 4 cut(s) 186, 504, 524, 1200
BstSFI CTRYAG 3 cut(s) 171, 352, 1044
BstV1I GCAGC 5 cut(s) 286, 889, 1018, 1094, 1185
BstV2I GAAGAC 1 cut(s) 670
BstX2I RGATCY 1 cut(s) 777
BstYI RGATCY 1 cut(s) 777
BsuRI GGCC 9 cut(s) 186, 230, 311, 377, 524, 597, 845, 1024, 1138
BtgZI GCGATG 1 cut(s) 626
BtsCI GGATG 5 cut(s) 496, 757, 877, 900, 1023
BtsI GCAGTG 4 cut(s) 279, 954, 1041, 1053
BtsIMutI CAGTG 6 cut(s) 279, 330, 933, 954, 1041, 1053
Cac8I GCNNGC 3 cut(s) 365, 768, 995
CfoI GCGC 1 cut(s) 693
Cfr10I RCCGGY 2 cut(s) 32, 182
Cfr13I GGNCC 5 cut(s) 376, 471, 1023, 1136, 1198
Csp6I GTAC 3 cut(s) 251, 427, 733
CviAII CATG 6 cut(s) 50, 118, 322, 478, 667, 1133
CviQI GTAC 3 cut(s) 251, 427, 733
DdeI CTNAG 4 cut(s) 222, 682, 795, 1086
DpnI GATC 5 cut(s) 399, 545, 639, 705, 779
DpnII GATC 5 cut(s) 397, 543, 637, 703, 777
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 3 cut(s) 294, 552, 867
Eco147I AGGCCT 2 cut(s) 311, 845
Eco47I GGWCC 2 cut(s) 471, 1198
Eco57I CTGAAG 1 cut(s) 835
Eco91I GGTNACC 1 cut(s) 35
EcoO109I RGGNCCY 2 cut(s) 471, 1198
EcoO65I GGTNACC 1 cut(s) 35
EcoRII CCWGG 3 cut(s) 186, 524, 1200
EcoT14I CCWWGG 3 cut(s) 294, 552, 867
ErhI CCWWGG 3 cut(s) 294, 552, 867
FaeI CATG 6 cut(s) 53, 121, 325, 481, 670, 1136
FalI AAGNNNNNCTT 4 cut(s) 413, 445, 977, 1009
FaqI GGGAC 3 cut(s) 140, 548, 963
FatI CATG 6 cut(s) 49, 117, 321, 477, 666, 1132
Fnu4HI GCNGC 5 cut(s) 300, 903, 1032, 1083, 1174
FokI GGATG 5 cut(s) 503, 764, 884, 907, 1030
Fsp4HI GCNGC 5 cut(s) 300, 903, 1032, 1083, 1174
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 692
GluI GCNGC 5 cut(s) 300, 903, 1032, 1083, 1174
GsaI CCCAGC 1 cut(s) 909
GsuI CTGGAG 2 cut(s) 662, 899
HaeIII GGCC 9 cut(s) 186, 230, 311, 377, 524, 597, 845, 1024, 1138
HapII CCGG 3 cut(s) 33, 183, 505
HhaI GCGC 1 cut(s) 693
Hin1II CATG 6 cut(s) 53, 121, 325, 481, 670, 1136
Hin6I GCGC 1 cut(s) 691
HinP1I GCGC 1 cut(s) 691
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 8 cut(s) 121, 134, 453, 509, 719, 881, 951, 1120
HpaII CCGG 3 cut(s) 33, 183, 505
HphI GGTGA 4 cut(s) 47, 703, 1120, 1126
Hpy166II GTNNAC 4 cut(s) 193, 253, 735, 826
Hpy188I TCNGA 5 cut(s) 223, 241, 397, 514, 685
Hpy188III TCNNGA 3 cut(s) 125, 641, 878
Hpy8I GTNNAC 4 cut(s) 193, 253, 735, 826
HpyAV CCTTC 6 cut(s) 149, 514, 1063, 1105, 1188, 1219
HpyCH4III ACNGT 3 cut(s) 86, 237, 937
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 9 cut(s) 53, 152, 354, 383, 569, 620, 670, 1046, 1064
HpyF10VI GCNNNNNNNGC 5 cut(s) 308, 360, 608, 617, 911
HpyF3I CTNAG 4 cut(s) 222, 682, 795, 1086
HpySE526I ACGT 1 cut(s) 571
Hsp92II CATG 6 cut(s) 53, 121, 325, 481, 670, 1136
HspAI GCGC 1 cut(s) 691
Kzo9I GATC 5 cut(s) 397, 543, 637, 703, 777
LguI GCTCTTC 1 cut(s) 198
Lsp1109I GCAGC 5 cut(s) 286, 889, 1018, 1094, 1185
LweI GCATC 3 cut(s) 481, 862, 970
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 571
MaeIII GTNAC 2 cut(s) 35, 356
MalI GATC 5 cut(s) 399, 545, 639, 705, 779
MboI GATC 5 cut(s) 397, 543, 637, 703, 777
MboII GAAGA 5 cut(s) 18, 215, 637, 670, 739
MflI RGATCY 1 cut(s) 777
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 7 cut(s) 22, 110, 146, 403, 463, 584, 919
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 4 cut(s) 518, 728, 890, 945
MmeI TCCRAC 2 cut(s) 468, 492
Mox20I TGGCCA 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 138
MscI TGGCCA 1 cut(s) 230
MseI TTAA 2 cut(s) 210, 941
MslI CAYNNNNRTG 3 cut(s) 482, 831, 1046
Msp20I TGGCCA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 1085
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 3 cut(s) 33, 183, 505
MspR9I CCNGG 4 cut(s) 188, 506, 526, 1202
Mva1269I GAATGC 1 cut(s) 421
MvaI CCWGG 3 cut(s) 188, 526, 1202
MwoI GCNNNNNNNGC 5 cut(s) 308, 360, 608, 617, 911
NciI CCSGG 1 cut(s) 506
NdeII GATC 5 cut(s) 397, 543, 637, 703, 777
NlaIII CATG 6 cut(s) 53, 121, 325, 481, 670, 1136
NlaIV GGNNCC 2 cut(s) 472, 1199
NmuCI GTSAC 1 cut(s) 35
NspI RCATGY 3 cut(s) 53, 481, 670
OliI CACNNNNGTG 2 cut(s) 831, 1046
PceI AGGCCT 2 cut(s) 311, 845
PciI ACATGT 1 cut(s) 477
PciSI GCTCTTC 1 cut(s) 198
PctI GAATGC 1 cut(s) 421
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 4 cut(s) 121, 134, 453, 1120
PflFI GACNNNGTC 1 cut(s) 95
PfoI TCCNGGA 1 cut(s) 1200
PkrI GCNGC 5 cut(s) 301, 904, 1033, 1084, 1175
PleI GAGTC 4 cut(s) 517, 727, 889, 945
PpsI GAGTC 4 cut(s) 517, 727, 889, 945
Ppu21I YACGTR 1 cut(s) 572
PpuMI RGGWCCY 2 cut(s) 471, 1198
PscI ACATGT 1 cut(s) 477
Psp5II RGGWCCY 2 cut(s) 471, 1198
Psp6I CCWGG 3 cut(s) 186, 524, 1200
PspEI GGTNACC 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 905
PspGI CCWGG 3 cut(s) 186, 524, 1200
PspN4I GGNNCC 2 cut(s) 472, 1199
PspPI GGNCC 5 cut(s) 376, 471, 1023, 1136, 1198
PspPPI RGGWCCY 2 cut(s) 471, 1198
PstI CTGCAG 2 cut(s) 356, 1048
PsuI RGATCY 1 cut(s) 777
PsyI GACNNNGTC 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 1085
RsaI GTAC 3 cut(s) 252, 428, 734
RsaNI GTAC 3 cut(s) 251, 427, 733
RseI CAYNNNNRTG 3 cut(s) 482, 831, 1046
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 2 cut(s) 210, 941
SatI GCNGC 5 cut(s) 300, 903, 1032, 1083, 1174
Sau3AI GATC 5 cut(s) 397, 543, 637, 703, 777
Sau96I GGNCC 5 cut(s) 376, 471, 1023, 1136, 1198
ScaI AGTACT 1 cut(s) 428
SchI GAGTC 4 cut(s) 518, 728, 890, 945
ScrFI CCNGG 4 cut(s) 188, 506, 526, 1202
SfaNI GCATC 3 cut(s) 481, 862, 970
SfcI CTRYAG 3 cut(s) 171, 352, 1044
SinI GGWCC 2 cut(s) 471, 1198
SmiMI CAYNNNNRTG 3 cut(s) 482, 831, 1046
SmlI CTYRAG 2 cut(s) 209, 305
SmoI CTYRAG 2 cut(s) 209, 305
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 7 cut(s) 22, 110, 146, 403, 463, 584, 919
SseBI AGGCCT 2 cut(s) 311, 845
SsiI CCGC 2 cut(s) 5, 89
SspMI CTAG 1 cut(s) 12
StuI AGGCCT 2 cut(s) 311, 845
StyD4I CCNGG 4 cut(s) 186, 504, 524, 1200
StyI CCWWGG 3 cut(s) 294, 552, 867
TaaI ACNGT 3 cut(s) 86, 237, 937
TaiI ACGT 1 cut(s) 574
TaqI TCGA 1 cut(s) 722
TasI AATT 7 cut(s) 22, 110, 146, 403, 463, 584, 919
TatI WGTACW 3 cut(s) 250, 426, 732
TfiI GAWTC 4 cut(s) 121, 134, 453, 1120
Tru1I TTAA 2 cut(s) 210, 941
Tru9I TTAA 2 cut(s) 210, 941
TscAI CASTG 6 cut(s) 286, 337, 940, 961, 1048, 1053
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 5 cut(s) 299, 902, 1031, 1082, 1173
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 4 cut(s) 131, 638, 740, 961
TspRI CASTG 6 cut(s) 286, 337, 940, 961, 1048, 1053
Tth111I GACNNNGTC 1 cut(s) 95
Vha464I CTTAAG 1 cut(s) 209
VpaK11BI GGWCC 2 cut(s) 471, 1198
XapI RAATTY 1 cut(s) 110
XceI RCATGY 3 cut(s) 53, 481, 670
XcmI CCANNNNNNNNNTGG 1 cut(s) 874
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.